Wall clock time and date at job start Sun Mar 29 2020 23:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 H 1.09000 * 109.47109 * 303.73062 * 3 2 1 5 5 C 1.50699 * 109.46882 * 183.73621 * 3 2 1 6 6 H 1.07996 * 119.99810 * 239.99782 * 5 3 2 7 7 C 1.37877 * 120.00163 * 59.99413 * 5 3 2 8 8 N 1.31509 * 120.00093 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99751 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47062 * 90.00309 * 9 7 5 11 11 H 1.48502 * 109.46759 * 210.00362 * 9 7 5 12 12 H 1.48502 * 109.47329 * 330.00176 * 9 7 5 13 13 N 1.46893 * 109.47107 * 63.73179 * 3 2 1 14 14 C 1.46904 * 111.00024 * 220.68782 * 13 3 2 15 15 C 1.52993 * 109.47356 * 304.97380 * 14 13 3 16 16 C 1.52997 * 109.47312 * 184.96983 * 14 13 3 17 17 C 1.53002 * 109.47224 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47074 * 60.00276 * 17 16 14 19 19 H 1.08994 * 109.47015 * 59.99486 * 18 17 16 20 20 O 1.42897 * 109.47173 * 180.02562 * 18 17 16 21 21 C 1.53007 * 109.46834 * 299.99950 * 18 17 16 22 22 C 1.52998 * 109.46906 * 60.00185 * 21 18 17 23 23 H 1.09003 * 109.46860 * 63.08966 * 1 2 3 24 24 H 1.08991 * 109.47069 * 183.09502 * 1 2 3 25 25 H 1.09002 * 109.46851 * 303.09570 * 1 2 3 26 26 H 1.08997 * 109.46809 * 239.99533 * 2 1 3 27 27 H 1.09002 * 109.47116 * 119.99841 * 2 1 3 28 28 H 0.97005 * 119.99962 * 179.97438 * 8 7 5 29 29 H 1.00910 * 111.00121 * 96.73882 * 13 3 2 30 30 H 1.09001 * 109.47435 * 65.33979 * 15 14 13 31 31 H 1.09002 * 109.47305 * 305.34097 * 15 14 13 32 32 H 1.08996 * 109.47369 * 185.33713 * 15 14 13 33 33 H 1.08998 * 109.47419 * 300.00715 * 16 14 13 34 34 H 1.09002 * 109.47331 * 60.00401 * 16 14 13 35 35 H 1.09002 * 109.47330 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.46955 * 300.00195 * 17 16 14 37 37 H 0.96703 * 113.99892 * 180.02562 * 20 18 17 38 38 H 1.09000 * 109.46785 * 179.97438 * 21 18 17 39 39 H 1.08997 * 109.46837 * 300.00107 * 21 18 17 40 40 H 1.09002 * 109.46987 * 179.97438 * 22 21 18 41 41 H 1.08997 * 109.47436 * 60.00289 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6231 1.9753 -0.8547 5 6 3.5442 1.4435 -0.0926 6 1 4.1332 1.8938 0.6926 7 6 4.1684 0.8694 -1.1797 8 7 3.4511 0.3214 -2.1361 9 14 6.0329 0.8700 -1.2940 10 1 6.5685 -0.3573 -0.6523 11 1 6.4412 0.9008 -2.7215 12 1 6.5711 2.0671 -0.5993 13 7 1.6254 2.1085 1.2419 14 6 1.1923 3.4877 0.9804 15 6 2.3054 4.2421 0.2508 16 6 0.8871 4.1865 2.3068 17 6 0.4354 5.6228 2.0344 18 6 -0.8239 5.6053 1.1656 19 1 -1.6166 5.0675 1.6856 20 8 -1.2454 6.9467 0.9107 21 6 -0.5186 4.9064 -0.1608 22 6 -0.0670 3.4702 0.1117 23 1 -0.3633 0.4651 -0.9164 24 1 -0.3633 -1.0261 0.0555 25 1 -0.3633 0.5612 0.8610 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8902 -0.0821 -2.9012 29 1 2.3644 2.0856 1.9287 30 1 2.4576 3.8016 -0.7346 31 1 3.2287 4.1732 0.8260 32 1 2.0231 5.2891 0.1408 33 1 0.0941 3.6490 2.8267 34 1 1.7841 4.1987 2.9260 35 1 0.2184 6.1208 2.9794 36 1 1.2282 6.1605 1.5144 37 1 -2.0407 7.0119 0.3646 38 1 -1.4159 4.8935 -0.7795 39 1 0.2741 5.4441 -0.6808 40 1 0.1500 2.9721 -0.8333 41 1 -0.8598 2.9324 0.6316 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:53 Heat of formation + Delta-G solvation = -92.839500 kcal Electronic energy + Delta-G solvation = -19015.350174 eV Core-core repulsion = 16314.217525 eV Total energy + Delta-G solvation = -2701.132649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80124 -38.07579 -36.17544 -33.87485 -32.67191 -31.74272 -29.67499 -28.27733 -26.80125 -24.65017 -23.79927 -22.30795 -20.99632 -19.31283 -18.58208 -18.10176 -16.95696 -16.64915 -15.72332 -15.48333 -15.40616 -14.86833 -14.68070 -14.40460 -13.82762 -13.62076 -13.31179 -13.24995 -13.10105 -13.03126 -12.77614 -12.63005 -12.43827 -12.31797 -12.07032 -11.84090 -11.76015 -11.55677 -11.46057 -11.17085 -10.85760 -10.84742 -10.54715 -10.32899 -8.92702 -8.02691 -6.19972 1.37014 1.39411 1.46918 2.41485 3.18440 3.29646 3.69690 3.85076 3.87500 4.25062 4.32268 4.40524 4.44228 4.50624 4.61681 4.66848 4.79789 4.83421 4.89024 4.97050 4.98305 5.07409 5.14185 5.18878 5.24578 5.29586 5.31934 5.41991 5.45589 5.54719 5.58389 5.66898 5.75997 5.87007 6.17574 6.29778 6.51368 6.93104 6.95029 7.13537 7.49613 8.95294 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.007195 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.467919 B = 3890.442816 C = 4310.789177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.540 4.540 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.116 3.884 15 C -0.157 4.157 16 C -0.095 4.095 17 C -0.109 4.109 18 C 0.113 3.887 19 H 0.067 0.933 20 O -0.584 6.584 21 C -0.144 4.144 22 C -0.094 4.094 23 H 0.029 0.971 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.022 0.978 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.032 0.968 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.393 0.607 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 8.572 6.037 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.117 3.883 4 H 0.028 0.972 5 C -0.579 4.579 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.303 5.303 14 C 0.025 3.975 15 C -0.216 4.216 16 C -0.133 4.133 17 C -0.147 4.147 18 C 0.054 3.946 19 H 0.085 0.915 20 O -0.392 6.392 21 C -0.183 4.183 22 C -0.132 4.132 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.144 0.856 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.837 8.344 6.212 13.649 hybrid contribution 1.822 -0.130 -1.152 2.160 sum -7.015 8.214 5.060 11.928 Atomic orbital electron populations 1.21575 0.96550 0.99604 1.00379 1.21395 0.94315 0.99128 0.99459 1.18881 0.91259 0.90933 0.87257 0.97151 1.22119 0.93935 1.36501 1.05366 0.93308 1.25580 1.01471 0.95262 0.95755 1.70005 1.36099 1.39064 1.10101 0.85805 0.82020 0.78329 0.76941 1.20358 1.21293 1.19795 1.60925 1.42618 1.14663 1.12108 1.20869 0.93647 0.88171 0.94838 1.22444 0.98730 1.00017 1.00437 1.21430 1.01722 0.94384 0.95733 1.21481 0.96611 0.96623 0.99976 1.21749 0.96384 0.82186 0.94276 0.91548 1.86453 1.50241 1.27334 1.75189 1.22251 1.01828 0.95720 0.98464 1.21438 0.96886 0.96017 0.98846 0.95181 0.94146 0.92026 0.92634 0.95881 0.93192 0.85559 0.94918 0.94342 0.92095 0.90601 0.91604 0.90445 0.92094 0.75794 0.90401 0.92428 0.94170 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.83 71.98 0.71 -4.21 16 2 C -0.10 -4.98 5.44 30.60 0.17 -4.82 16 3 C 0.23 10.80 1.19 44.17 0.05 10.85 16 4 H 0.01 0.57 4.98 -2.39 -0.01 0.56 16 5 C -0.54 -28.60 7.34 25.60 0.19 -28.41 16 6 H 0.05 2.57 7.50 -2.91 -0.02 2.55 16 7 C 0.02 1.02 5.30 84.66 0.45 1.46 16 8 N -0.91 -52.16 11.30 21.45 0.24 -51.91 16 9 Si 0.94 43.63 29.54 68.60 2.03 45.66 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 N -0.67 -26.71 5.31 -452.11 -2.40 -29.11 16 14 C 0.12 3.93 0.70 3.52 0.00 3.93 16 15 C -0.16 -5.89 6.79 71.98 0.49 -5.40 16 16 C -0.09 -2.57 4.94 30.59 0.15 -2.42 16 17 C -0.11 -2.68 5.30 30.60 0.16 -2.52 16 18 C 0.11 2.58 3.47 30.60 0.11 2.68 16 19 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 20 O -0.58 -12.74 13.32 -148.98 -1.98 -14.72 16 21 C -0.14 -3.73 5.27 30.60 0.16 -3.57 16 22 C -0.09 -3.01 4.68 30.59 0.14 -2.87 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 2.29 7.63 -2.39 -0.02 2.27 16 26 H 0.06 3.02 5.98 -2.39 -0.01 3.01 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 29 H 0.33 13.13 7.99 -89.69 -0.72 12.42 16 30 H 0.03 1.45 6.44 -2.39 -0.02 1.43 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 2.01 4.83 -2.39 -0.01 2.00 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.63 6.31 -2.39 -0.02 1.62 16 37 H 0.39 5.13 9.08 -74.06 -0.67 4.46 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.65 6.55 -2.39 -0.02 1.64 16 40 H 0.04 1.55 6.33 -2.39 -0.02 1.53 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -59.24 304.40 0.29 -58.95 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.37 Total: 26.40 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 2.78 Total: -35.28 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.16 Total: -81.02 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -1.98 Total: -14.72 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -59.24 0.29 -58.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.886 kcal (2) G-P(sol) polarization free energy of solvation -59.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds