Wall clock time and date at job start Sun Mar 29 2020 23:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 H 1.09000 * 109.47060 * 54.33898 * 3 2 1 5 5 C 1.50697 * 109.47117 * 174.34157 * 3 2 1 6 6 H 1.08002 * 120.00228 * 114.66398 * 5 3 2 7 7 C 1.37879 * 119.99810 * 294.65987 * 5 3 2 8 8 N 1.31514 * 120.00256 * 347.94941 * 7 5 3 9 9 Si 1.86802 * 119.99786 * 167.95389 * 7 5 3 10 10 H 1.48503 * 109.47173 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47111 * 240.00045 * 9 7 5 12 12 H 1.48503 * 109.47466 * 120.00053 * 9 7 5 13 13 N 1.46901 * 109.47107 * 294.33984 * 3 2 1 14 14 C 1.46899 * 110.99819 * 144.62652 * 13 3 2 15 15 C 1.53003 * 109.47042 * 294.08485 * 14 13 3 16 16 C 1.52996 * 109.46993 * 174.08411 * 14 13 3 17 17 C 1.53006 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47261 * 59.99681 * 17 16 14 19 19 H 1.09004 * 109.46984 * 60.00540 * 18 17 16 20 20 O 1.42901 * 109.46957 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47366 * 300.00105 * 18 17 16 22 22 C 1.52998 * 109.47047 * 60.00013 * 21 18 17 23 23 H 1.09006 * 109.47154 * 186.07283 * 1 2 3 24 24 H 1.08998 * 109.47205 * 306.06656 * 1 2 3 25 25 H 1.08994 * 109.47520 * 66.06969 * 1 2 3 26 26 H 1.08996 * 109.47246 * 240.00104 * 2 1 3 27 27 H 1.09002 * 109.46865 * 120.00167 * 2 1 3 28 28 H 0.96999 * 119.99997 * 359.81915 * 8 7 5 29 29 H 1.00899 * 110.99608 * 20.67775 * 13 3 2 30 30 H 1.08994 * 109.47150 * 66.26524 * 15 14 13 31 31 H 1.09004 * 109.46869 * 186.26388 * 15 14 13 32 32 H 1.08997 * 109.47167 * 306.25622 * 15 14 13 33 33 H 1.08998 * 109.47005 * 299.99689 * 16 14 13 34 34 H 1.08997 * 109.47249 * 60.00514 * 16 14 13 35 35 H 1.08999 * 109.46978 * 180.02562 * 17 16 14 36 36 H 1.09006 * 109.47021 * 299.99345 * 17 16 14 37 37 H 0.96697 * 114.00042 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.46907 * 180.02562 * 21 18 17 39 39 H 1.08996 * 109.46961 * 299.99757 * 21 18 17 40 40 H 1.08999 * 109.47008 * 179.97438 * 22 21 18 41 41 H 1.08996 * 109.47450 * 60.00042 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5962 1.9847 0.8350 5 6 3.5404 1.4448 0.1401 6 1 4.1577 1.8078 -0.6684 7 6 4.1251 0.9836 1.3004 8 7 3.3873 0.7658 2.3671 9 14 5.9655 0.6682 1.3575 10 1 6.5637 0.9884 0.0365 11 1 6.2132 -0.7602 1.6794 12 1 6.5825 1.5251 2.4017 13 7 1.6650 2.0944 -1.2619 14 6 1.3449 3.5119 -1.0472 15 6 0.0847 3.6256 -0.1870 16 6 1.1039 4.1904 -2.3972 17 6 0.7711 5.6670 -2.1736 18 6 1.9393 6.3508 -1.4605 19 1 2.8369 6.2695 -2.0736 20 8 1.6287 7.7300 -1.2523 21 6 2.1803 5.6723 -0.1106 22 6 2.5131 4.1958 -0.3341 23 1 -0.3634 -1.0220 0.1087 24 1 -0.3633 0.6050 0.8307 25 1 -0.3634 0.4168 -0.9392 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.4321 0.9321 2.3383 29 1 0.8959 1.6128 -1.7030 30 1 0.2911 3.2423 0.8122 31 1 -0.2164 4.6711 -0.1201 32 1 -0.7183 3.0447 -0.6404 33 1 2.0016 4.1094 -3.0100 34 1 0.2718 3.7030 -2.9053 35 1 0.5989 6.1503 -3.1354 36 1 -0.1266 5.7484 -1.5607 37 1 2.3266 8.2270 -0.8042 38 1 3.0123 6.1599 0.3976 39 1 1.2827 5.7538 0.5023 40 1 2.6853 3.7126 0.6276 41 1 3.4107 4.1144 -0.9471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:55 Heat of formation + Delta-G solvation = -75.301743 kcal Electronic energy + Delta-G solvation = -19108.428313 eV Core-core repulsion = 16408.056159 eV Total energy + Delta-G solvation = -2700.372154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54302 -36.91661 -34.92250 -32.20849 -31.09023 -30.49673 -28.30752 -26.10138 -25.58255 -22.89038 -22.45640 -21.10128 -19.72738 -18.06164 -17.05507 -16.60925 -15.72258 -14.73486 -14.46984 -14.20577 -13.71060 -13.63440 -13.20755 -12.99262 -12.64376 -12.30424 -12.15330 -11.90541 -11.65771 -11.43256 -11.28892 -11.05389 -10.71888 -10.67631 -10.47446 -10.36470 -10.28623 -10.09103 -9.98626 -9.82955 -9.64190 -9.23926 -8.65879 -8.26723 -7.20106 -6.25769 -3.93184 3.47078 3.49434 3.64437 4.30240 4.56545 4.92489 5.01558 5.15470 5.37292 5.47436 5.49019 5.61838 5.64144 5.73440 5.83449 5.91369 5.96223 6.03316 6.07994 6.13149 6.15716 6.20604 6.26252 6.42134 6.51402 6.60347 6.62924 6.64677 6.79497 6.91054 6.97078 7.19934 7.27396 7.41907 7.73772 8.10042 8.27140 8.51925 8.76843 9.00190 9.73593 11.08468 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.008460 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.203005 B = 3308.904553 C = 4103.339613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.132 4.132 3 C 0.205 3.795 4 H 0.007 0.993 5 C -0.568 4.568 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.291 1.291 13 N -0.671 5.671 14 C 0.122 3.878 15 C -0.181 4.181 16 C -0.101 4.101 17 C -0.109 4.109 18 C 0.104 3.896 19 H 0.053 0.947 20 O -0.576 6.576 21 C -0.152 4.152 22 C -0.094 4.094 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.268 0.732 29 H 0.316 0.684 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.374 0.626 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 7.614 -6.194 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.097 3.903 4 H 0.024 0.976 5 C -0.607 4.607 6 H 0.074 0.926 7 C -0.188 4.188 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.218 1.218 13 N -0.301 5.301 14 C 0.030 3.970 15 C -0.240 4.240 16 C -0.140 4.140 17 C -0.147 4.147 18 C 0.046 3.954 19 H 0.071 0.929 20 O -0.381 6.381 21 C -0.191 4.191 22 C -0.132 4.132 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.221 0.779 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.219 7.019 -5.701 9.598 hybrid contribution -1.614 0.465 -0.192 1.691 sum -4.833 7.483 -5.893 10.681 Atomic orbital electron populations 1.21898 0.98937 1.00010 1.00071 1.21925 0.91985 1.01178 1.01963 1.19342 0.96281 0.88728 0.85900 0.97560 1.21993 0.90836 1.44707 1.03129 0.92628 1.25679 1.06324 0.94595 0.92198 1.70759 1.08176 1.47300 1.29131 0.83595 0.75058 0.76699 0.75097 1.21541 1.21550 1.21817 1.60816 1.41285 1.00310 1.27665 1.20744 0.93019 0.90305 0.92915 1.22683 0.98611 1.01232 1.01487 1.21488 1.01635 0.93214 0.97622 1.21499 0.97875 0.95231 1.00088 1.21894 0.97470 0.80251 0.95781 0.92901 1.86462 1.47431 1.22095 1.82116 1.22361 1.01618 0.98022 0.97076 1.21501 0.97384 0.91508 1.02772 0.94130 0.93771 0.94053 0.93079 0.91297 0.92106 0.86610 0.92298 0.92558 0.93684 0.91242 0.92233 0.91948 0.91318 0.77949 0.92267 0.91612 0.89416 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.68 37.16 0.36 -2.41 16 2 C -0.13 -2.93 5.17 -26.73 -0.14 -3.06 16 3 C 0.21 4.78 0.90 -68.87 -0.06 4.71 16 4 H 0.01 0.17 4.48 -51.93 -0.23 -0.06 16 5 C -0.57 -15.06 6.81 -34.44 -0.23 -15.29 16 6 H 0.06 1.54 7.84 -52.49 -0.41 1.13 16 7 C 0.02 0.42 5.10 -17.82 -0.09 0.33 16 8 N -0.92 -26.51 12.96 55.43 0.72 -25.79 16 9 Si 1.07 25.03 29.92 -169.99 -5.09 19.94 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.67 -13.54 5.94 -94.25 -0.56 -14.10 16 14 C 0.12 2.15 0.68 -131.60 -0.09 2.06 16 15 C -0.18 -3.04 7.58 37.16 0.28 -2.76 16 16 C -0.10 -1.54 5.04 -26.73 -0.13 -1.67 16 17 C -0.11 -1.52 5.30 -26.73 -0.14 -1.67 16 18 C 0.10 1.47 3.47 -26.74 -0.09 1.38 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 20 O -0.58 -7.67 13.32 -35.23 -0.47 -8.14 16 21 C -0.15 -2.36 5.27 -26.73 -0.14 -2.50 16 22 C -0.09 -1.77 3.74 -26.73 -0.10 -1.87 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.68 6.73 -51.93 -0.35 0.33 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.72 6.60 -51.93 -0.34 1.37 16 28 H 0.27 7.73 6.37 -40.82 -0.26 7.47 16 29 H 0.32 5.94 6.60 -39.29 -0.26 5.69 16 30 H 0.06 1.11 6.49 -51.93 -0.34 0.77 16 31 H 0.06 0.87 4.84 -51.93 -0.25 0.62 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.98 6.30 -51.93 -0.33 0.65 16 37 H 0.37 3.47 9.08 45.56 0.41 3.88 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.04 6.58 -51.93 -0.34 0.69 16 40 H 0.09 1.99 5.96 -51.93 -0.31 1.68 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -28.67 301.50 -7.47 -36.14 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.03 Total: 10.15 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -0.58 Total: -22.75 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.16 Total: -39.89 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.47 Total: -8.14 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.09 Total: 19.94 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.67 -7.47 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.161 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds