Wall clock time and date at job start Sun Mar 29 2020 23:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47363 * 2 1 4 4 H 1.08997 * 109.46968 * 306.70321 * 3 2 1 5 5 C 1.50695 * 109.47283 * 186.70136 * 3 2 1 6 6 H 1.08005 * 120.00109 * 245.61111 * 5 3 2 7 7 C 1.37881 * 120.00219 * 65.60802 * 5 3 2 8 8 N 1.31515 * 119.99652 * 8.05153 * 7 5 3 9 9 Si 1.86799 * 120.00113 * 188.05466 * 7 5 3 10 10 H 1.48503 * 109.46758 * 269.99849 * 9 7 5 11 11 H 1.48500 * 109.47121 * 29.99734 * 9 7 5 12 12 H 1.48499 * 109.46863 * 150.00213 * 9 7 5 13 13 N 1.46905 * 109.46881 * 66.70027 * 3 2 1 14 14 C 1.44274 * 110.99706 * 285.41702 * 13 3 2 15 15 C 1.54072 * 111.97963 * 219.30781 * 14 13 3 16 16 C 1.54290 * 112.28885 * 318.92090 * 15 14 13 17 17 H 1.09001 * 108.77443 * 79.21268 * 16 15 14 18 18 C 1.53004 * 108.77020 * 197.38279 * 16 15 14 19 19 C 1.50469 * 113.03303 * 318.30003 * 16 15 14 20 20 H 1.08998 * 109.67422 * 332.28245 * 19 16 15 21 21 O 1.42904 * 109.57114 * 211.96905 * 19 16 15 22 22 C 1.54499 * 108.85242 * 92.15708 * 19 16 15 23 23 C 1.45868 * 111.59025 * 282.80433 * 22 19 16 24 24 H 1.09005 * 109.46960 * 285.83181 * 1 2 3 25 25 H 1.09000 * 109.47228 * 45.83205 * 1 2 3 26 26 H 1.08997 * 109.47274 * 165.83848 * 1 2 3 27 27 H 1.09003 * 109.46969 * 240.00102 * 2 1 3 28 28 H 1.09000 * 109.47364 * 119.99948 * 2 1 3 29 29 H 0.96998 * 120.00038 * 5.46041 * 8 7 5 30 30 H 1.08998 * 108.98164 * 339.95072 * 14 13 3 31 31 H 1.08998 * 108.97639 * 98.67110 * 14 13 3 32 32 H 1.08990 * 108.91989 * 198.19300 * 15 14 13 33 33 H 1.09003 * 108.84045 * 79.59058 * 15 14 13 34 34 H 1.09000 * 109.47095 * 183.49819 * 18 16 15 35 35 H 1.08996 * 109.47209 * 303.50194 * 18 16 15 36 36 H 1.09002 * 109.47111 * 63.50240 * 18 16 15 37 37 H 0.96696 * 113.99355 * 180.62903 * 21 19 16 38 38 H 1.08998 * 109.05733 * 162.26401 * 22 19 16 39 39 H 1.08996 * 109.06015 * 43.35254 * 22 19 16 40 40 H 1.08996 * 108.79488 * 300.44399 * 23 22 19 41 41 H 1.08998 * 108.70060 * 182.15218 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5821 1.9898 -0.8239 5 6 3.5378 1.4457 -0.1658 6 1 4.1691 1.7997 0.6359 7 6 4.1024 0.9968 -1.3409 8 7 3.3369 0.7156 -2.3727 9 14 5.9543 0.7878 -1.4672 10 1 6.5635 2.0537 -1.9486 11 1 6.5066 0.4495 -0.1309 12 1 6.2650 -0.3057 -2.4227 13 7 1.6868 2.0868 1.2721 14 6 0.2810 2.4085 1.3158 15 6 0.0222 3.7727 1.9835 16 6 0.9109 3.9946 3.2250 17 1 1.9060 4.2932 2.8953 18 6 0.3129 5.1268 4.0626 19 6 1.0347 2.7677 4.0873 20 1 0.1448 2.1485 3.9743 21 8 1.1770 3.1563 5.4551 22 6 2.2807 1.9693 3.6437 23 6 2.0292 1.2189 2.4184 24 1 -0.3633 0.2804 0.9887 25 1 -0.3634 0.7160 -0.7371 26 1 -0.3634 -0.9964 -0.2514 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3851 0.8986 -2.3346 30 1 -0.1090 2.4322 0.2982 31 1 -0.2425 1.6343 1.8767 32 1 -1.0242 3.8263 2.2837 33 1 0.2226 4.5626 1.2596 34 1 0.9655 5.3352 4.9104 35 1 0.2182 6.0222 3.4483 36 1 -0.6709 4.8295 4.4258 37 1 1.2716 2.4137 6.0671 38 1 2.5587 1.2742 4.4359 39 1 3.1053 2.6616 3.4741 40 1 1.2055 0.5268 2.5933 41 1 2.9222 0.6454 2.1702 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:38 Heat of formation + Delta-G solvation = -56.487424 kcal Electronic energy + Delta-G solvation = -19165.829596 eV Core-core repulsion = 16466.273292 eV Total energy + Delta-G solvation = -2699.556304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.58187 -37.13736 -34.40909 -32.96189 -31.90363 -30.50322 -28.49507 -26.01686 -24.79079 -23.21822 -22.42998 -20.97419 -19.53567 -18.75541 -17.27406 -16.86630 -15.28253 -15.08617 -14.64553 -14.33694 -13.72072 -13.61005 -13.21124 -12.91557 -12.53482 -12.36354 -12.26664 -12.06547 -11.70776 -11.37194 -11.19477 -10.88763 -10.79534 -10.73535 -10.65742 -10.32699 -10.23223 -10.11336 -9.99248 -9.88380 -9.66769 -9.42739 -8.55711 -8.25658 -7.22365 -6.32742 -4.02299 3.45247 3.47491 3.63425 4.42314 4.52852 4.77266 4.98279 5.21380 5.32273 5.37251 5.48694 5.54698 5.61686 5.77370 5.88301 5.91159 5.97436 6.01969 6.07063 6.14819 6.18823 6.23597 6.32857 6.42566 6.54256 6.61579 6.61667 6.63159 6.71262 6.74968 6.79579 6.96872 7.15838 7.35959 7.80932 7.93804 8.10513 8.39204 8.64358 8.90791 9.66290 11.03706 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027493 B = 0.007456 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.194291 B = 3754.281643 C = 4124.604030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.155 4.155 3 C 0.207 3.793 4 H 0.030 0.970 5 C -0.578 4.578 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.512 5.512 14 C 0.048 3.952 15 C -0.103 4.103 16 C -0.075 4.075 17 H 0.080 0.920 18 C -0.135 4.135 19 C 0.115 3.885 20 H 0.046 0.954 21 O -0.567 6.567 22 C -0.140 4.140 23 C 0.061 3.939 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.269 0.731 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.369 0.631 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.098 2.125 11.099 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.195 4.195 3 C 0.101 3.899 4 H 0.048 0.952 5 C -0.617 4.617 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.211 1.211 13 N -0.234 5.234 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.094 4.094 17 H 0.098 0.902 18 C -0.192 4.192 19 C 0.057 3.943 20 H 0.064 0.936 21 O -0.372 6.372 22 C -0.178 4.178 23 C -0.067 4.067 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.215 0.785 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.656 2.649 9.843 11.206 hybrid contribution -1.674 -0.870 1.074 2.171 sum -6.330 1.779 10.917 12.744 Atomic orbital electron populations 1.22205 0.98850 0.99999 1.00532 1.22374 0.92497 1.02547 1.02103 1.19575 0.96708 0.87963 0.85701 0.95190 1.21915 0.90643 1.46126 1.02987 0.92623 1.25710 1.06538 0.94010 0.92154 1.70758 1.07610 1.45342 1.31341 0.83592 0.74695 0.76780 0.75430 1.21595 1.21563 1.21129 1.61765 1.14677 1.43545 1.03452 1.22219 0.91003 0.95324 0.99579 1.22042 0.97527 0.98476 0.96132 1.20769 1.01088 0.93876 0.93644 0.90165 1.21664 1.00481 0.97429 0.99653 1.21559 0.96196 0.95691 0.80876 0.93599 1.86544 1.96375 1.36947 1.17364 1.21318 0.99016 0.99878 0.97598 1.20796 1.00991 0.94088 0.90816 0.93353 0.93449 0.94544 0.91140 0.93290 0.91958 0.92120 0.94991 0.93004 0.91874 0.92093 0.93712 0.93593 0.78523 0.92473 0.90713 0.96190 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.16 -3.46 4.69 -26.73 -0.13 -3.58 16 3 C 0.21 4.96 1.47 -68.86 -0.10 4.85 16 4 H 0.03 0.80 6.79 -51.93 -0.35 0.45 16 5 C -0.58 -15.63 7.77 -34.44 -0.27 -15.90 16 6 H 0.06 1.54 7.68 -52.48 -0.40 1.14 16 7 C 0.02 0.54 5.17 -17.82 -0.09 0.45 16 8 N -0.91 -26.70 12.81 55.43 0.71 -25.99 16 9 Si 1.07 24.94 29.91 -169.99 -5.08 19.86 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.51 -10.44 4.13 -232.93 -0.96 -11.40 16 14 C 0.05 0.85 3.50 -4.67 -0.02 0.83 16 15 C -0.10 -1.60 5.51 -25.50 -0.14 -1.74 16 16 C -0.08 -1.16 2.28 -91.21 -0.21 -1.37 16 17 H 0.08 1.41 7.38 -51.93 -0.38 1.03 16 18 C -0.13 -1.85 8.31 37.16 0.31 -1.54 16 19 C 0.12 1.67 2.93 -27.21 -0.08 1.59 16 20 H 0.05 0.67 7.17 -51.93 -0.37 0.30 16 21 O -0.57 -7.48 11.42 -35.23 -0.40 -7.89 16 22 C -0.14 -2.20 5.18 -29.32 -0.15 -2.36 16 23 C 0.06 1.12 3.37 -6.70 -0.02 1.10 16 24 H 0.05 0.83 4.87 -51.93 -0.25 0.58 16 25 H 0.05 0.88 7.18 -51.93 -0.37 0.51 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.77 6.45 -51.93 -0.33 1.44 16 28 H 0.05 1.07 6.10 -51.93 -0.32 0.75 16 29 H 0.27 7.83 6.36 -40.82 -0.26 7.57 16 30 H 0.06 1.12 5.92 -51.93 -0.31 0.81 16 31 H 0.03 0.54 4.59 -51.93 -0.24 0.30 16 32 H 0.05 0.71 7.98 -51.93 -0.41 0.30 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.86 7.23 -51.93 -0.38 0.49 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.37 3.37 9.06 45.56 0.41 3.78 16 38 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 1.31 7.59 -51.93 -0.39 0.91 16 40 H 0.02 0.35 6.37 -51.93 -0.33 0.02 16 41 H 0.08 1.70 6.38 -51.93 -0.33 1.36 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -28.86 294.03 -7.82 -36.69 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.93 Total: 4.59 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.58 Total: -20.29 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.25 Total: -37.39 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.40 Total: -7.89 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.86 -7.82 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.802 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds