Wall clock time and date at job start Sun Mar 29 2020 23:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47363 * 2 1 4 4 H 1.08997 * 109.46968 * 306.70321 * 3 2 1 5 5 C 1.50695 * 109.47283 * 186.70136 * 3 2 1 6 6 H 1.08005 * 120.00109 * 245.61111 * 5 3 2 7 7 C 1.37881 * 120.00219 * 65.60802 * 5 3 2 8 8 N 1.31515 * 119.99652 * 8.05153 * 7 5 3 9 9 Si 1.86799 * 120.00113 * 188.05466 * 7 5 3 10 10 H 1.48503 * 109.46758 * 269.99849 * 9 7 5 11 11 H 1.48500 * 109.47121 * 29.99734 * 9 7 5 12 12 H 1.48499 * 109.46863 * 150.00213 * 9 7 5 13 13 N 1.46905 * 109.46881 * 66.70027 * 3 2 1 14 14 C 1.44274 * 110.99706 * 285.41702 * 13 3 2 15 15 C 1.54072 * 111.97963 * 219.30781 * 14 13 3 16 16 C 1.54290 * 112.28885 * 318.92090 * 15 14 13 17 17 H 1.09001 * 108.77443 * 79.21268 * 16 15 14 18 18 C 1.53004 * 108.77020 * 197.38279 * 16 15 14 19 19 C 1.50469 * 113.03303 * 318.30003 * 16 15 14 20 20 H 1.08998 * 109.67422 * 332.28245 * 19 16 15 21 21 O 1.42904 * 109.57114 * 211.96905 * 19 16 15 22 22 C 1.54499 * 108.85242 * 92.15708 * 19 16 15 23 23 C 1.45868 * 111.59025 * 282.80433 * 22 19 16 24 24 H 1.09005 * 109.46960 * 285.83181 * 1 2 3 25 25 H 1.09000 * 109.47228 * 45.83205 * 1 2 3 26 26 H 1.08997 * 109.47274 * 165.83848 * 1 2 3 27 27 H 1.09003 * 109.46969 * 240.00102 * 2 1 3 28 28 H 1.09000 * 109.47364 * 119.99948 * 2 1 3 29 29 H 0.96998 * 120.00038 * 5.46041 * 8 7 5 30 30 H 1.08998 * 108.98164 * 339.95072 * 14 13 3 31 31 H 1.08998 * 108.97639 * 98.67110 * 14 13 3 32 32 H 1.08990 * 108.91989 * 198.19300 * 15 14 13 33 33 H 1.09003 * 108.84045 * 79.59058 * 15 14 13 34 34 H 1.09000 * 109.47095 * 183.49819 * 18 16 15 35 35 H 1.08996 * 109.47209 * 303.50194 * 18 16 15 36 36 H 1.09002 * 109.47111 * 63.50240 * 18 16 15 37 37 H 0.96696 * 113.99355 * 180.62903 * 21 19 16 38 38 H 1.08998 * 109.05733 * 162.26401 * 22 19 16 39 39 H 1.08996 * 109.06015 * 43.35254 * 22 19 16 40 40 H 1.08996 * 108.79488 * 300.44399 * 23 22 19 41 41 H 1.08998 * 108.70060 * 182.15218 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5821 1.9898 -0.8239 5 6 3.5378 1.4457 -0.1658 6 1 4.1691 1.7997 0.6359 7 6 4.1024 0.9968 -1.3409 8 7 3.3369 0.7156 -2.3727 9 14 5.9543 0.7878 -1.4672 10 1 6.5635 2.0537 -1.9486 11 1 6.5066 0.4495 -0.1309 12 1 6.2650 -0.3057 -2.4227 13 7 1.6868 2.0868 1.2721 14 6 0.2810 2.4085 1.3158 15 6 0.0222 3.7727 1.9835 16 6 0.9109 3.9946 3.2250 17 1 1.9060 4.2932 2.8953 18 6 0.3129 5.1268 4.0626 19 6 1.0347 2.7677 4.0873 20 1 0.1448 2.1485 3.9743 21 8 1.1770 3.1563 5.4551 22 6 2.2807 1.9693 3.6437 23 6 2.0292 1.2189 2.4184 24 1 -0.3633 0.2804 0.9887 25 1 -0.3634 0.7160 -0.7371 26 1 -0.3634 -0.9964 -0.2514 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3851 0.8986 -2.3346 30 1 -0.1090 2.4322 0.2982 31 1 -0.2425 1.6343 1.8767 32 1 -1.0242 3.8263 2.2837 33 1 0.2226 4.5626 1.2596 34 1 0.9655 5.3352 4.9104 35 1 0.2182 6.0222 3.4483 36 1 -0.6709 4.8295 4.4258 37 1 1.2716 2.4137 6.0671 38 1 2.5587 1.2742 4.4359 39 1 3.1053 2.6616 3.4741 40 1 1.2055 0.5268 2.5933 41 1 2.9222 0.6454 2.1702 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:37 Heat of formation + Delta-G solvation = -76.377043 kcal Electronic energy + Delta-G solvation = -19166.692075 eV Core-core repulsion = 16466.273292 eV Total energy + Delta-G solvation = -2700.418783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01394 -38.52057 -35.83086 -34.58205 -33.50146 -32.02537 -30.02062 -27.66447 -26.17982 -25.02685 -23.84597 -22.50700 -21.09698 -20.13894 -18.85567 -18.39104 -16.92055 -16.47055 -16.01863 -15.73670 -15.61613 -14.99285 -14.80707 -14.25574 -13.93432 -13.80289 -13.68246 -13.59726 -13.23789 -12.80449 -12.70705 -12.59207 -12.43066 -12.32239 -12.08521 -11.95676 -11.85553 -11.70379 -11.41139 -11.32844 -11.06174 -10.62928 -10.55841 -10.35239 -8.84244 -8.54099 -6.23497 1.53264 1.60509 1.78356 2.58091 3.18359 3.22990 3.46286 3.72153 3.89037 4.09537 4.14712 4.26591 4.30022 4.34720 4.40514 4.45095 4.58158 4.64128 4.72319 4.79538 4.82028 4.91583 5.02130 5.06793 5.11336 5.13466 5.14183 5.17025 5.30634 5.36886 5.43818 5.47364 5.56152 5.60278 6.01910 6.15281 6.57545 6.59356 6.85829 6.96953 7.52392 8.82482 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027493 B = 0.007456 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.194291 B = 3754.281643 C = 4124.604030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.212 3.788 4 H -0.002 1.002 5 C -0.586 4.586 6 H 0.043 0.957 7 C -0.028 4.028 8 N -0.937 5.937 9 Si 1.109 2.891 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.284 1.284 13 N -0.524 5.524 14 C 0.048 3.952 15 C -0.098 4.098 16 C -0.077 4.077 17 H 0.050 0.950 18 C -0.127 4.127 19 C 0.127 3.873 20 H 0.057 0.943 21 O -0.572 6.572 22 C -0.136 4.136 23 C 0.067 3.933 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.258 0.742 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.389 0.611 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 2.045 13.111 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.105 3.895 4 H 0.016 0.984 5 C -0.624 4.624 6 H 0.061 0.939 7 C -0.226 4.226 8 N -0.575 5.575 9 Si 0.932 3.068 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.210 1.210 13 N -0.247 5.247 14 C -0.081 4.081 15 C -0.136 4.136 16 C -0.096 4.096 17 H 0.068 0.932 18 C -0.184 4.184 19 C 0.068 3.932 20 H 0.075 0.925 21 O -0.379 6.379 22 C -0.174 4.174 23 C -0.060 4.060 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.613 2.572 11.891 13.399 hybrid contribution -1.394 -0.820 0.507 1.695 sum -7.007 1.751 12.398 14.349 Atomic orbital electron populations 1.22079 0.95704 1.01016 1.01648 1.22169 0.95252 1.00707 1.00407 1.19311 0.94790 0.88819 0.86609 0.98444 1.22216 0.92528 1.45309 1.02371 0.93899 1.26972 1.09995 0.93629 0.92018 1.70865 1.07206 1.47216 1.32194 0.83029 0.70507 0.77080 0.76150 1.20584 1.19934 1.21001 1.61712 1.16867 1.43657 1.02500 1.22261 0.89209 0.97099 0.99529 1.21997 0.99134 0.96620 0.95867 1.20745 0.99579 0.95228 0.94057 0.93155 1.21580 1.00711 0.96937 0.99159 1.21321 0.95531 0.94853 0.81519 0.92521 1.86514 1.96280 1.38307 1.16849 1.21266 0.99166 0.99893 0.97082 1.20767 1.00050 0.94193 0.91010 0.91330 0.93882 0.92869 0.94587 0.93081 0.93168 0.93306 0.93368 0.90265 0.92844 0.92595 0.93140 0.92403 0.76197 0.89733 0.93062 0.94766 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 8.51 71.98 0.61 -4.69 16 2 C -0.15 -6.54 4.69 30.59 0.14 -6.40 16 3 C 0.21 10.42 1.47 44.17 0.06 10.49 16 4 H 0.00 -0.12 6.79 -2.39 -0.02 -0.14 16 5 C -0.59 -32.60 7.77 25.60 0.20 -32.40 16 6 H 0.04 2.44 7.68 -2.91 -0.02 2.42 16 7 C -0.03 -1.58 5.17 84.66 0.44 -1.15 16 8 N -0.94 -56.38 12.81 21.45 0.27 -56.11 16 9 Si 1.11 50.82 29.91 68.60 2.05 52.87 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 N -0.52 -21.41 4.13 -890.86 -3.68 -25.09 16 14 C 0.05 1.62 3.50 87.16 0.30 1.93 16 15 C -0.10 -2.85 5.51 31.39 0.17 -2.67 16 16 C -0.08 -2.24 2.28 -11.17 -0.03 -2.27 16 17 H 0.05 1.76 7.38 -2.39 -0.02 1.74 16 18 C -0.13 -3.15 8.31 71.98 0.60 -2.55 16 19 C 0.13 3.32 2.93 30.29 0.09 3.41 16 20 H 0.06 1.41 7.17 -2.39 -0.02 1.39 16 21 O -0.57 -13.15 11.42 -148.98 -1.70 -14.85 16 22 C -0.14 -4.06 5.18 28.92 0.15 -3.91 16 23 C 0.07 2.42 3.37 83.94 0.28 2.70 16 24 H 0.07 2.17 4.87 -2.38 -0.01 2.16 16 25 H 0.04 1.57 7.18 -2.39 -0.02 1.56 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.85 6.45 -2.39 -0.02 1.83 16 28 H 0.05 2.23 6.10 -2.39 -0.01 2.21 16 29 H 0.26 15.68 6.36 -92.71 -0.59 15.09 16 30 H 0.05 1.77 5.92 -2.39 -0.01 1.75 16 31 H 0.05 1.48 4.59 -2.39 -0.01 1.46 16 32 H 0.08 1.90 7.98 -2.39 -0.02 1.88 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.45 7.23 -2.39 -0.02 1.43 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.39 5.56 9.06 -74.06 -0.67 4.88 16 38 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 39 H 0.05 1.78 7.59 -2.39 -0.02 1.76 16 40 H 0.03 1.13 6.37 -2.39 -0.02 1.11 16 41 H 0.05 2.16 6.38 -2.39 -0.02 2.14 16 Total: -1.00 -63.55 294.03 0.49 -63.06 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.52 Total: 17.62 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.03 Total: -37.51 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -3.41 Total: -81.20 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.70 Total: -14.85 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -63.55 0.49 -63.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.318 kcal (2) G-P(sol) polarization free energy of solvation -63.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds