Wall clock time and date at job start Sun Mar 29 2020 23:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 H 1.09000 * 109.46657 * 173.15657 * 3 2 1 5 5 C 1.50694 * 109.47187 * 53.15748 * 3 2 1 6 6 H 1.08002 * 120.00142 * 244.71307 * 5 3 2 7 7 C 1.37880 * 119.99971 * 64.70933 * 5 3 2 8 8 N 1.31511 * 119.99930 * 8.92035 * 7 5 3 9 9 Si 1.86798 * 120.00001 * 188.91734 * 7 5 3 10 10 H 1.48501 * 109.47286 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47225 * 240.00247 * 9 7 5 12 12 H 1.48499 * 109.47022 * 120.00382 * 9 7 5 13 13 N 1.46899 * 109.47031 * 293.15516 * 3 2 1 14 14 C 1.47632 * 110.99482 * 69.62221 * 13 3 2 15 15 C 1.50823 * 108.02784 * 150.31194 * 14 13 3 16 16 C 1.53816 * 111.61410 * 95.06983 * 15 14 13 17 17 H 1.08994 * 108.98215 * 79.67648 * 16 15 14 18 18 O 1.42904 * 108.97945 * 198.48363 * 16 15 14 19 19 C 1.54170 * 111.96979 * 319.03413 * 16 15 14 20 20 H 1.09007 * 108.85516 * 79.19127 * 19 16 15 21 21 C 1.52999 * 108.85512 * 197.67328 * 19 16 15 22 22 C 1.50753 * 112.61489 * 318.48756 * 19 16 15 23 23 C 1.39777 * 111.00196 * 300.71582 * 13 3 2 24 24 H 1.09000 * 109.47202 * 197.17220 * 1 2 3 25 25 H 1.09002 * 109.46913 * 317.17009 * 1 2 3 26 26 H 1.08999 * 109.47449 * 77.16893 * 1 2 3 27 27 H 1.09003 * 109.46927 * 239.99946 * 2 1 3 28 28 H 1.08999 * 109.47222 * 120.00347 * 2 1 3 29 29 H 0.97002 * 120.00343 * 4.06455 * 8 7 5 30 30 H 1.09001 * 109.75052 * 269.94329 * 14 13 3 31 31 H 1.08998 * 109.74901 * 30.63376 * 14 13 3 32 32 H 1.09000 * 109.04887 * 215.61624 * 15 14 13 33 33 H 1.09000 * 109.05357 * 334.51713 * 15 14 13 34 34 H 0.96704 * 113.99476 * 299.98893 * 18 16 15 35 35 H 1.09005 * 109.46678 * 60.00311 * 21 19 16 36 36 H 1.08994 * 109.47285 * 180.02562 * 21 19 16 37 37 H 1.08999 * 109.47419 * 300.00922 * 21 19 16 38 38 H 1.09004 * 109.54249 * 212.87712 * 22 19 16 39 39 H 1.09001 * 109.54545 * 333.14072 * 22 19 16 40 40 H 1.08997 * 109.02050 * 309.72906 * 23 13 3 41 41 H 1.09004 * 109.01831 * 68.55666 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1231 1.4448 0.1225 5 6 1.4043 2.2001 1.1370 6 1 0.7393 3.0257 0.9308 7 6 1.6716 1.8392 2.4406 8 7 2.6103 0.9550 2.6988 9 14 0.7005 2.6061 3.8399 10 1 -0.2909 3.5640 3.2878 11 1 1.6280 3.3234 4.7513 12 1 -0.0079 1.5403 4.5932 13 7 1.6898 2.0857 -1.2734 14 6 0.2336 2.3077 -1.3710 15 6 0.0038 3.5289 -2.2257 16 6 -0.2549 3.1520 -3.6944 17 1 -1.2912 2.8316 -3.8010 18 8 -0.0374 4.3018 -4.5145 19 6 0.6726 2.0161 -4.1703 20 1 0.2806 1.0659 -3.8076 21 6 0.6827 1.9942 -5.7001 22 6 2.0876 2.1776 -3.6760 23 6 2.2510 1.3978 -2.3531 24 1 -0.3633 -0.9818 0.3034 25 1 -0.3633 0.7537 0.6986 26 1 -0.3634 0.2282 -1.0020 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.1544 0.6007 1.9782 30 1 -0.2411 1.4412 -1.8314 31 1 -0.1817 2.4700 -0.3763 32 1 -0.8577 4.0750 -1.8415 33 1 0.8830 4.1709 -2.1727 34 1 -0.6114 5.0506 -4.3022 35 1 1.0483 2.9504 -6.0747 36 1 1.3357 1.1938 -6.0478 37 1 -0.3290 1.8229 -6.0678 38 1 2.7807 1.7838 -4.4195 39 1 2.2958 3.2338 -3.5049 40 1 3.3126 1.2414 -2.1616 41 1 1.7621 0.4283 -2.4494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:39 Heat of formation + Delta-G solvation = -47.906872 kcal Electronic energy + Delta-G solvation = -19298.958473 eV Core-core repulsion = 16599.774250 eV Total energy + Delta-G solvation = -2699.184224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.67805 -37.17266 -34.58238 -32.77461 -31.50440 -30.70537 -28.06985 -25.92863 -25.09659 -23.35375 -22.66837 -20.64470 -19.36956 -19.02075 -17.00822 -16.72488 -15.54333 -15.10870 -14.40622 -14.13346 -13.73061 -13.43143 -13.24168 -13.20047 -12.99511 -12.58514 -12.08144 -11.88473 -11.53534 -11.29266 -11.08003 -11.00424 -10.77858 -10.53395 -10.49377 -10.26869 -10.14426 -10.10613 -9.94345 -9.76092 -9.56472 -9.31457 -8.55902 -8.21646 -7.03044 -6.32843 -4.02180 3.43377 3.46019 3.58671 4.44276 4.51177 4.83650 4.97823 5.16961 5.17902 5.37178 5.41882 5.62689 5.70908 5.78402 5.89312 5.92427 6.06087 6.09108 6.16956 6.22444 6.25468 6.33840 6.37329 6.44088 6.51290 6.56890 6.74184 6.77471 6.83228 6.92788 7.07525 7.23530 7.33098 7.44687 7.80327 7.99724 8.13983 8.54104 8.67804 8.93162 9.65612 11.02782 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034362 B = 0.007336 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.666293 B = 3815.773559 C = 4171.630815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 C 0.207 3.793 4 H 0.029 0.971 5 C -0.581 4.581 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.065 2.935 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.542 5.542 14 C 0.063 3.937 15 C -0.151 4.151 16 C 0.113 3.887 17 H 0.042 0.958 18 O -0.568 6.568 19 C -0.080 4.080 20 H 0.070 0.930 21 C -0.138 4.138 22 C -0.111 4.111 23 C 0.076 3.924 24 H 0.022 0.978 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.270 0.730 30 H 0.034 0.966 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.371 0.629 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.706 2.252 -11.674 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.191 4.191 3 C 0.100 3.900 4 H 0.047 0.953 5 C -0.619 4.619 6 H 0.078 0.922 7 C -0.182 4.182 8 N -0.548 5.548 9 Si 0.894 3.106 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.265 5.265 14 C -0.063 4.063 15 C -0.190 4.190 16 C 0.054 3.946 17 H 0.060 0.940 18 O -0.373 6.373 19 C -0.099 4.099 20 H 0.088 0.912 21 C -0.195 4.195 22 C -0.149 4.149 23 C -0.054 4.054 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.217 0.783 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -5.253 2.254 -10.320 11.798 hybrid contribution -0.519 -0.521 -1.359 1.545 sum -5.772 1.734 -11.679 13.142 Atomic orbital electron populations 1.22110 0.97057 1.00231 1.00893 1.22174 0.96131 1.01418 0.99331 1.19415 0.95750 0.88648 0.86152 0.95348 1.21926 1.30675 1.17878 0.91433 0.92224 1.25656 0.97106 0.96008 0.99400 1.70718 1.18677 1.28771 1.36606 0.83601 0.75685 0.75770 0.75494 1.21505 1.21525 1.21431 1.58969 1.11878 1.52808 1.02798 1.22126 0.88867 0.94587 1.00764 1.22266 1.02188 1.00506 0.94013 1.22314 0.96810 0.85799 0.89676 0.94012 1.86508 1.65058 1.25017 1.60677 1.21010 0.96152 0.96842 0.95886 0.91157 1.21754 1.00778 1.01765 0.95252 1.21570 0.94936 1.02131 0.96302 1.20919 0.99107 0.94158 0.91255 0.95848 0.90429 0.93963 0.95629 0.91887 0.91822 0.94819 0.88089 0.92820 0.89886 0.78324 0.91739 0.93388 0.93631 0.92261 0.90660 0.92360 0.97087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.42 37.16 0.31 -2.73 16 2 C -0.15 -3.43 5.15 -26.73 -0.14 -3.56 16 3 C 0.21 4.98 1.96 -68.87 -0.13 4.85 16 4 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 5 C -0.58 -15.21 6.00 -34.44 -0.21 -15.42 16 6 H 0.06 1.58 6.16 -52.49 -0.32 1.25 16 7 C 0.02 0.62 5.24 -17.82 -0.09 0.53 16 8 N -0.91 -26.46 12.96 55.43 0.72 -25.74 16 9 Si 1.07 24.54 29.91 -169.99 -5.08 19.45 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.54 -11.24 3.97 -233.38 -0.93 -12.17 16 14 C 0.06 1.19 3.31 -4.51 -0.01 1.17 16 15 C -0.15 -2.43 5.01 -27.40 -0.14 -2.56 16 16 C 0.11 1.59 3.14 -25.69 -0.08 1.51 16 17 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 18 O -0.57 -7.51 11.84 -35.23 -0.42 -7.93 16 19 C -0.08 -1.17 2.08 -91.13 -0.19 -1.36 16 20 H 0.07 1.06 6.57 -51.93 -0.34 0.72 16 21 C -0.14 -1.77 8.54 37.16 0.32 -1.45 16 22 C -0.11 -1.76 5.16 -27.11 -0.14 -1.90 16 23 C 0.08 1.40 4.34 -6.74 -0.03 1.37 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.75 5.77 -51.93 -0.30 1.45 16 26 H 0.04 0.80 5.04 -51.93 -0.26 0.54 16 27 H 0.03 0.54 6.24 -51.93 -0.32 0.22 16 28 H 0.06 1.58 6.51 -51.93 -0.34 1.25 16 29 H 0.27 7.86 6.14 -40.82 -0.25 7.61 16 30 H 0.03 0.62 4.12 -51.93 -0.21 0.40 16 31 H 0.10 2.13 4.41 -51.93 -0.23 1.90 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.49 7.26 -51.93 -0.38 1.11 16 34 H 0.37 3.46 9.08 45.56 0.41 3.88 16 35 H 0.06 0.87 7.29 -51.93 -0.38 0.49 16 36 H 0.05 0.56 8.00 -51.93 -0.42 0.15 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.85 7.64 -51.93 -0.40 0.45 16 39 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 40 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 41 H 0.01 0.21 5.88 -51.93 -0.31 -0.09 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -28.37 289.41 -7.57 -35.94 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.69 Total: 5.64 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.53 Total: -19.56 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.21 Total: -37.90 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.42 Total: -7.93 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.45 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.37 -7.57 -35.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.962 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds