Wall clock time and date at job start Sun Mar 29 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47029 * 2 1 4 4 H 1.08997 * 109.46945 * 305.49095 * 3 2 1 5 5 C 1.50700 * 109.46621 * 185.49242 * 3 2 1 6 6 H 1.08000 * 119.99843 * 244.39469 * 5 3 2 7 7 C 1.37874 * 120.00056 * 64.40091 * 5 3 2 8 8 N 1.31511 * 120.00356 * 6.67094 * 7 5 3 9 9 Si 1.86799 * 120.00187 * 186.67066 * 7 5 3 10 10 H 1.48503 * 109.47696 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47038 * 59.99901 * 9 7 5 12 12 H 1.48502 * 109.47147 * 299.99847 * 9 7 5 13 13 N 1.46901 * 109.47215 * 65.49744 * 3 2 1 14 14 C 1.44310 * 110.99571 * 287.23256 * 13 3 2 15 15 C 1.53979 * 108.31285 * 221.35401 * 14 13 3 16 16 C 1.45875 * 112.66759 * 278.59374 * 15 14 13 17 17 H 1.09001 * 109.03928 * 300.93311 * 16 15 14 18 18 C 1.52997 * 109.04258 * 182.05970 * 16 15 14 19 19 C 1.54527 * 111.66811 * 61.49581 * 16 15 14 20 20 H 1.08996 * 109.56981 * 42.58678 * 19 16 15 21 21 O 1.42900 * 109.56940 * 162.95504 * 19 16 15 22 22 C 1.50532 * 108.86659 * 282.77011 * 19 16 15 23 23 C 1.47937 * 111.00179 * 54.64345 * 13 3 2 24 24 H 1.09008 * 109.46987 * 292.87143 * 1 2 3 25 25 H 1.08992 * 109.46943 * 52.86730 * 1 2 3 26 26 H 1.08998 * 109.47363 * 172.87093 * 1 2 3 27 27 H 1.08995 * 109.46919 * 239.99653 * 2 1 3 28 28 H 1.09000 * 109.46920 * 119.99795 * 2 1 3 29 29 H 0.97004 * 119.99912 * 355.44048 * 8 7 5 30 30 H 1.09002 * 109.69178 * 341.05658 * 14 13 3 31 31 H 1.08991 * 109.69512 * 101.65071 * 14 13 3 32 32 H 1.09000 * 108.84685 * 157.77310 * 15 14 13 33 33 H 1.09001 * 108.75946 * 39.35913 * 15 14 13 34 34 H 1.08999 * 109.47286 * 297.83510 * 18 16 15 35 35 H 1.08997 * 109.47430 * 57.83708 * 18 16 15 36 36 H 1.09004 * 109.47412 * 177.83802 * 18 16 15 37 37 H 0.96701 * 113.99904 * 179.38064 * 21 19 16 38 38 H 1.09007 * 108.78882 * 330.85651 * 22 19 16 39 39 H 1.09004 * 108.70047 * 212.58341 * 22 19 16 40 40 H 1.08998 * 108.71637 * 313.18116 * 23 13 3 41 41 H 1.09004 * 108.70898 * 71.20191 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9839 -0.8367 5 6 3.5409 1.4446 -0.1360 6 1 4.1554 1.8224 0.6678 7 6 4.1295 0.9642 -1.2865 8 7 3.3832 0.6269 -2.3155 9 14 5.9870 0.7926 -1.3839 10 1 6.3657 0.2576 -2.7164 11 1 6.4541 -0.1391 -0.3260 12 1 6.6180 2.1223 -1.1863 13 7 1.6617 2.0957 1.2603 14 6 0.2471 2.3795 1.2912 15 6 0.0476 3.7786 1.9024 16 6 0.0918 3.7667 3.3604 17 1 -0.6894 3.1049 3.7344 18 6 -0.1657 5.1828 3.8792 19 6 1.4604 3.2784 3.8859 20 1 2.2594 3.7290 3.2972 21 8 1.6063 3.6490 5.2582 22 6 1.5241 1.7798 3.7587 23 6 2.1361 1.3162 2.4247 24 1 -0.3633 0.3994 0.9469 25 1 -0.3633 0.6203 -0.8192 26 1 -0.3634 -1.0197 -0.1275 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4163 0.6531 -2.2427 30 1 -0.1535 2.3608 0.2777 31 1 -0.2635 1.6354 1.9025 32 1 -0.9190 4.1680 1.5827 33 1 0.8323 4.4382 1.5318 34 1 0.6220 5.8481 3.5256 35 1 -1.1300 5.5344 3.5126 36 1 -0.1724 5.1749 4.9692 37 1 2.4408 3.3650 5.6558 38 1 0.5144 1.3773 3.8404 39 1 2.1261 1.3849 4.5772 40 1 1.8835 0.2673 2.2698 41 1 3.2206 1.4065 2.4875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:41 Heat of formation + Delta-G solvation = -52.081110 kcal Electronic energy + Delta-G solvation = -19138.332475 eV Core-core repulsion = 16438.967243 eV Total energy + Delta-G solvation = -2699.365232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56044 -37.10943 -34.80621 -32.95713 -31.61965 -30.34477 -28.59723 -26.03116 -24.67241 -23.38774 -22.59537 -20.47097 -19.86169 -19.02299 -17.09882 -16.71394 -15.72010 -14.87266 -14.75246 -14.28911 -13.72787 -13.27301 -13.13192 -13.02016 -12.79357 -12.50039 -12.37917 -12.00629 -11.71513 -11.36642 -11.30843 -10.92195 -10.81895 -10.61544 -10.56786 -10.32292 -10.17523 -10.11064 -10.04737 -9.91702 -9.73349 -9.47968 -8.55041 -8.22603 -7.06585 -6.32081 -4.02993 3.44266 3.45271 3.64102 4.36992 4.51970 4.77056 4.93389 5.13401 5.36622 5.39824 5.46077 5.58337 5.64208 5.72102 5.88182 5.91958 5.95567 6.00515 6.09711 6.10012 6.16092 6.21800 6.33658 6.35572 6.41269 6.50996 6.61152 6.65511 6.67773 6.79400 6.80007 6.94347 7.18161 7.43435 7.84401 7.97035 8.10909 8.43924 8.63587 8.91399 9.66821 11.04389 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.007441 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.527956 B = 3762.216620 C = 4192.648817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.161 4.161 3 C 0.210 3.790 4 H 0.031 0.969 5 C -0.580 4.580 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.532 5.532 14 C 0.060 3.940 15 C -0.116 4.116 16 C -0.071 4.071 17 H 0.060 0.940 18 C -0.139 4.139 19 C 0.116 3.884 20 H 0.069 0.931 21 O -0.574 6.574 22 C -0.150 4.150 23 C 0.067 3.933 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.270 0.730 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.372 0.628 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 3.177 10.631 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.200 4.200 3 C 0.104 3.896 4 H 0.049 0.951 5 C -0.619 4.619 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.256 5.256 14 C -0.069 4.069 15 C -0.154 4.154 16 C -0.090 4.090 17 H 0.079 0.921 18 C -0.196 4.196 19 C 0.058 3.942 20 H 0.087 0.913 21 O -0.380 6.380 22 C -0.189 4.189 23 C -0.060 4.060 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.219 0.781 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.593 3.461 9.514 11.117 hybrid contribution -1.147 -0.789 1.048 1.742 sum -5.740 2.672 10.561 12.314 Atomic orbital electron populations 1.22285 0.98817 0.99902 1.01076 1.22382 0.92629 1.02957 1.02054 1.19488 0.96470 0.87714 0.85948 0.95082 1.21909 0.90587 1.44390 1.05015 0.92701 1.25720 1.06801 0.94047 0.92011 1.70806 1.07299 1.46711 1.30427 0.83566 0.74515 0.76452 0.75902 1.20937 1.21630 1.21502 1.60942 1.12607 1.48886 1.03162 1.22069 0.90580 0.94649 0.99614 1.20644 1.01473 0.99124 0.94203 1.20027 0.95511 0.97314 0.96101 0.92136 1.21735 1.00467 0.95974 1.01428 1.21542 0.97990 0.93290 0.81373 0.91303 1.86449 1.43287 1.81904 1.26350 1.22205 1.01343 0.97007 0.98309 1.22260 1.00255 0.95492 0.88015 0.92733 0.93502 0.94667 0.91079 0.93063 0.91803 0.91683 0.94661 0.92535 0.90928 0.92970 0.93552 0.92176 0.78149 0.92568 0.91785 0.94459 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.48 37.16 0.32 -2.75 16 2 C -0.16 -3.59 4.75 -26.73 -0.13 -3.72 16 3 C 0.21 5.03 1.53 -68.86 -0.11 4.93 16 4 H 0.03 0.83 7.22 -51.93 -0.38 0.45 16 5 C -0.58 -15.65 8.11 -34.44 -0.28 -15.93 16 6 H 0.05 1.50 6.93 -52.49 -0.36 1.13 16 7 C 0.02 0.50 5.20 -17.82 -0.09 0.41 16 8 N -0.92 -26.80 13.04 55.43 0.72 -26.08 16 9 Si 1.07 24.83 29.91 -169.99 -5.08 19.75 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.53 -10.79 3.92 -228.05 -0.89 -11.68 16 14 C 0.06 1.05 3.52 -4.70 -0.02 1.03 16 15 C -0.12 -1.79 4.56 -29.59 -0.13 -1.93 16 16 C -0.07 -1.03 2.15 -93.19 -0.20 -1.23 16 17 H 0.06 0.87 7.59 -51.93 -0.39 0.48 16 18 C -0.14 -1.83 8.72 37.16 0.32 -1.50 16 19 C 0.12 1.73 2.81 -27.16 -0.08 1.65 16 20 H 0.07 1.16 7.78 -51.93 -0.40 0.75 16 21 O -0.57 -7.75 11.94 -35.23 -0.42 -8.17 16 22 C -0.15 -2.26 5.01 -27.48 -0.14 -2.40 16 23 C 0.07 1.25 4.81 -2.77 -0.01 1.23 16 24 H 0.05 0.95 4.71 -51.92 -0.24 0.70 16 25 H 0.05 0.87 7.59 -51.93 -0.39 0.47 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.79 6.06 -51.93 -0.31 1.47 16 28 H 0.05 1.14 5.75 -51.93 -0.30 0.84 16 29 H 0.27 7.84 5.81 -40.82 -0.24 7.60 16 30 H 0.06 1.19 5.96 -51.93 -0.31 0.88 16 31 H 0.04 0.60 4.96 -51.93 -0.26 0.34 16 32 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.06 0.80 7.35 -51.93 -0.38 0.42 16 37 H 0.37 3.63 8.92 45.56 0.41 4.04 16 38 H 0.06 0.84 6.66 -51.92 -0.35 0.50 16 39 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 40 H 0.04 0.72 5.38 -51.93 -0.28 0.45 16 41 H 0.07 1.45 7.07 -51.93 -0.37 1.09 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -28.90 293.96 -7.66 -36.56 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.87 Total: 5.39 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.54 Total: -20.20 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.17 Total: -37.76 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.42 Total: -8.17 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.90 -7.66 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.520 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds