Wall clock time and date at job start Sun Mar 29 2020 23:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47029 * 2 1 4 4 H 1.08997 * 109.46945 * 305.49095 * 3 2 1 5 5 C 1.50700 * 109.46621 * 185.49242 * 3 2 1 6 6 H 1.08000 * 119.99843 * 244.39469 * 5 3 2 7 7 C 1.37874 * 120.00056 * 64.40091 * 5 3 2 8 8 N 1.31511 * 120.00356 * 6.67094 * 7 5 3 9 9 Si 1.86799 * 120.00187 * 186.67066 * 7 5 3 10 10 H 1.48503 * 109.47696 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47038 * 59.99901 * 9 7 5 12 12 H 1.48502 * 109.47147 * 299.99847 * 9 7 5 13 13 N 1.46901 * 109.47215 * 65.49744 * 3 2 1 14 14 C 1.44310 * 110.99571 * 287.23256 * 13 3 2 15 15 C 1.53979 * 108.31285 * 221.35401 * 14 13 3 16 16 C 1.45875 * 112.66759 * 278.59374 * 15 14 13 17 17 H 1.09001 * 109.03928 * 300.93311 * 16 15 14 18 18 C 1.52997 * 109.04258 * 182.05970 * 16 15 14 19 19 C 1.54527 * 111.66811 * 61.49581 * 16 15 14 20 20 H 1.08996 * 109.56981 * 42.58678 * 19 16 15 21 21 O 1.42900 * 109.56940 * 162.95504 * 19 16 15 22 22 C 1.50532 * 108.86659 * 282.77011 * 19 16 15 23 23 C 1.47937 * 111.00179 * 54.64345 * 13 3 2 24 24 H 1.09008 * 109.46987 * 292.87143 * 1 2 3 25 25 H 1.08992 * 109.46943 * 52.86730 * 1 2 3 26 26 H 1.08998 * 109.47363 * 172.87093 * 1 2 3 27 27 H 1.08995 * 109.46919 * 239.99653 * 2 1 3 28 28 H 1.09000 * 109.46920 * 119.99795 * 2 1 3 29 29 H 0.97004 * 119.99912 * 355.44048 * 8 7 5 30 30 H 1.09002 * 109.69178 * 341.05658 * 14 13 3 31 31 H 1.08991 * 109.69512 * 101.65071 * 14 13 3 32 32 H 1.09000 * 108.84685 * 157.77310 * 15 14 13 33 33 H 1.09001 * 108.75946 * 39.35913 * 15 14 13 34 34 H 1.08999 * 109.47286 * 297.83510 * 18 16 15 35 35 H 1.08997 * 109.47430 * 57.83708 * 18 16 15 36 36 H 1.09004 * 109.47412 * 177.83802 * 18 16 15 37 37 H 0.96701 * 113.99904 * 179.38064 * 21 19 16 38 38 H 1.09007 * 108.78882 * 330.85651 * 22 19 16 39 39 H 1.09004 * 108.70047 * 212.58341 * 22 19 16 40 40 H 1.08998 * 108.71637 * 313.18116 * 23 13 3 41 41 H 1.09004 * 108.70898 * 71.20191 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9839 -0.8367 5 6 3.5409 1.4446 -0.1360 6 1 4.1554 1.8224 0.6678 7 6 4.1295 0.9642 -1.2865 8 7 3.3832 0.6269 -2.3155 9 14 5.9870 0.7926 -1.3839 10 1 6.3657 0.2576 -2.7164 11 1 6.4541 -0.1391 -0.3260 12 1 6.6180 2.1223 -1.1863 13 7 1.6617 2.0957 1.2603 14 6 0.2471 2.3795 1.2912 15 6 0.0476 3.7786 1.9024 16 6 0.0918 3.7667 3.3604 17 1 -0.6894 3.1049 3.7344 18 6 -0.1657 5.1828 3.8792 19 6 1.4604 3.2784 3.8859 20 1 2.2594 3.7290 3.2972 21 8 1.6063 3.6490 5.2582 22 6 1.5241 1.7798 3.7587 23 6 2.1361 1.3162 2.4247 24 1 -0.3633 0.3994 0.9469 25 1 -0.3633 0.6203 -0.8192 26 1 -0.3634 -1.0197 -0.1275 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.4163 0.6531 -2.2427 30 1 -0.1535 2.3608 0.2777 31 1 -0.2635 1.6354 1.9025 32 1 -0.9190 4.1680 1.5827 33 1 0.8323 4.4382 1.5318 34 1 0.6220 5.8481 3.5256 35 1 -1.1300 5.5344 3.5126 36 1 -0.1724 5.1749 4.9692 37 1 2.4408 3.3650 5.6558 38 1 0.5144 1.3773 3.8404 39 1 2.1261 1.3849 4.5772 40 1 1.8835 0.2673 2.2698 41 1 3.2206 1.4065 2.4875 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:41 Heat of formation + Delta-G solvation = -71.697711 kcal Electronic energy + Delta-G solvation = -19139.183115 eV Core-core repulsion = 16438.967243 eV Total energy + Delta-G solvation = -2700.215872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96322 -38.54807 -36.11633 -34.70989 -33.20298 -31.82297 -30.09221 -27.67306 -26.11651 -25.15681 -24.01462 -22.11641 -21.06225 -20.62158 -18.89299 -18.05695 -17.17077 -16.31726 -16.26691 -15.71996 -15.60508 -14.79758 -14.55374 -14.26828 -14.16555 -13.92806 -13.80019 -13.57750 -13.33156 -12.78552 -12.67034 -12.61335 -12.36691 -12.35979 -12.01672 -11.96787 -11.79962 -11.56420 -11.50114 -11.37075 -11.02990 -10.78336 -10.54384 -10.31967 -8.69062 -8.53106 -6.23978 1.53722 1.60631 1.79707 2.58898 3.19558 3.26104 3.30304 3.78747 3.87678 4.06743 4.10377 4.25307 4.33117 4.36617 4.44580 4.47281 4.54365 4.66811 4.70685 4.79839 4.87817 4.93366 4.98264 5.01796 5.07666 5.11867 5.13613 5.18589 5.28672 5.31486 5.37386 5.51759 5.56193 5.61967 6.02366 6.15621 6.58325 6.63673 6.89443 6.94591 7.53889 8.84204 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.007441 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.527956 B = 3762.216620 C = 4192.648817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.215 3.785 4 H -0.002 1.002 5 C -0.589 4.589 6 H 0.046 0.954 7 C -0.030 4.030 8 N -0.940 5.940 9 Si 1.110 2.890 10 H -0.287 1.287 11 H -0.273 1.273 12 H -0.276 1.276 13 N -0.541 5.541 14 C 0.060 3.940 15 C -0.107 4.107 16 C -0.073 4.073 17 H 0.070 0.930 18 C -0.133 4.133 19 C 0.123 3.877 20 H 0.044 0.956 21 O -0.576 6.576 22 C -0.140 4.140 23 C 0.071 3.929 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.389 0.611 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.029 0.971 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 3.360 12.566 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C 0.107 3.893 4 H 0.016 0.984 5 C -0.627 4.627 6 H 0.064 0.936 7 C -0.228 4.228 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.213 1.213 11 H -0.198 1.198 12 H -0.201 1.201 13 N -0.264 5.264 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.091 4.091 17 H 0.088 0.912 18 C -0.190 4.190 19 C 0.064 3.936 20 H 0.062 0.938 21 O -0.384 6.384 22 C -0.178 4.178 23 C -0.056 4.056 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.322 3.653 11.485 13.175 hybrid contribution -0.929 -0.811 0.492 1.328 sum -6.252 2.843 11.977 13.806 Atomic orbital electron populations 1.22164 0.95725 1.01134 1.01925 1.22183 0.95360 1.01235 1.00324 1.19223 0.94716 0.88499 0.86823 0.98397 1.22237 0.92445 1.43491 1.04528 0.93564 1.27008 1.10386 0.93559 0.91877 1.70906 1.06921 1.48704 1.31375 0.83009 0.70268 0.77321 0.76111 1.21282 1.19815 1.20131 1.60848 1.14657 1.48716 1.02226 1.22116 0.88787 0.96383 0.99582 1.20556 1.01879 0.97100 0.94948 1.20032 0.95463 0.98451 0.95162 0.91193 1.21670 1.01091 0.94884 1.01336 1.21338 0.97533 0.92804 0.81906 0.93782 1.86424 1.44679 1.81954 1.25303 1.22112 1.01824 0.97305 0.96520 1.22226 0.99277 0.94955 0.89191 0.90961 0.93827 0.92932 0.94370 0.93091 0.92904 0.92730 0.93259 0.90364 0.92993 0.93686 0.91960 0.92155 0.76191 0.91723 0.89594 0.95276 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 8.48 71.98 0.61 -4.95 16 2 C -0.15 -6.87 4.75 30.60 0.15 -6.72 16 3 C 0.21 10.55 1.53 44.17 0.07 10.62 16 4 H 0.00 -0.10 7.22 -2.39 -0.02 -0.12 16 5 C -0.59 -32.53 8.11 25.60 0.21 -32.32 16 6 H 0.05 2.58 6.93 -2.91 -0.02 2.56 16 7 C -0.03 -1.71 5.20 84.65 0.44 -1.27 16 8 N -0.94 -56.69 13.04 21.45 0.28 -56.41 16 9 Si 1.11 50.42 29.91 68.60 2.05 52.47 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 13 N -0.54 -21.95 3.92 -875.40 -3.43 -25.38 16 14 C 0.06 2.02 3.52 87.12 0.31 2.33 16 15 C -0.11 -3.11 4.56 28.74 0.13 -2.98 16 16 C -0.07 -1.91 2.15 -12.46 -0.03 -1.94 16 17 H 0.07 1.76 7.59 -2.39 -0.02 1.74 16 18 C -0.13 -3.14 8.72 71.98 0.63 -2.51 16 19 C 0.12 3.40 2.81 30.31 0.09 3.49 16 20 H 0.04 1.45 7.78 -2.39 -0.02 1.43 16 21 O -0.58 -13.90 11.94 -148.98 -1.78 -15.68 16 22 C -0.14 -3.87 5.01 30.11 0.15 -3.72 16 23 C 0.07 2.58 4.81 86.41 0.42 3.00 16 24 H 0.07 2.36 4.71 -2.38 -0.01 2.35 16 25 H 0.04 1.60 7.59 -2.39 -0.02 1.58 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.97 6.06 -2.39 -0.01 1.96 16 28 H 0.05 2.28 5.75 -2.39 -0.01 2.27 16 29 H 0.26 15.75 5.81 -92.71 -0.54 15.21 16 30 H 0.05 1.96 5.96 -2.39 -0.01 1.95 16 31 H 0.05 1.54 4.96 -2.39 -0.01 1.53 16 32 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 33 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 36 H 0.06 1.43 7.35 -2.38 -0.02 1.42 16 37 H 0.39 6.45 8.92 -74.06 -0.66 5.79 16 38 H 0.06 1.72 6.66 -2.38 -0.02 1.70 16 39 H 0.09 2.02 7.85 -2.38 -0.02 2.00 16 40 H 0.03 1.11 5.38 -2.39 -0.01 1.10 16 41 H 0.05 2.04 7.07 -2.38 -0.02 2.02 16 Total: -1.00 -63.08 293.96 0.87 -62.21 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.58 Total: 19.77 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 3.16 Total: -36.97 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.15 Total: -81.79 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.78 Total: -15.68 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -63.08 0.87 -62.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.489 kcal (2) G-P(sol) polarization free energy of solvation -63.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds