Wall clock time and date at job start Sun Mar 29 2020 23:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 H 1.09000 * 109.47267 * 55.66884 * 3 2 1 5 5 C 1.50704 * 109.47243 * 175.66223 * 3 2 1 6 6 H 1.07998 * 119.99881 * 119.99840 * 5 3 2 7 7 C 1.37878 * 119.99984 * 300.00689 * 5 3 2 8 8 N 1.31509 * 119.99987 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99845 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47326 * 59.99773 * 9 7 5 11 11 H 1.48500 * 109.47176 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47346 * 299.99670 * 9 7 5 13 13 N 1.46900 * 109.47460 * 295.66496 * 3 2 1 14 14 C 1.46844 * 110.99823 * 294.35001 * 13 3 2 15 15 C 1.53034 * 109.52248 * 174.15943 * 14 13 3 16 16 C 1.53113 * 109.27982 * 59.18167 * 15 14 13 17 17 H 1.08993 * 109.52762 * 62.25067 * 16 15 14 18 18 C 1.52998 * 109.52529 * 182.44166 * 16 15 14 19 19 C 1.53122 * 109.15956 * 302.34668 * 16 15 14 20 20 C 1.53005 * 109.50290 * 297.71146 * 19 16 15 21 21 O 1.42900 * 109.50262 * 177.59693 * 19 16 15 22 22 C 1.46849 * 111.00045 * 170.14365 * 13 3 2 23 23 H 1.09002 * 109.47205 * 59.99809 * 1 2 3 24 24 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46862 * 299.99951 * 1 2 3 26 26 H 1.09006 * 109.47368 * 240.00575 * 2 1 3 27 27 H 1.09001 * 109.47673 * 120.00439 * 2 1 3 28 28 H 0.97009 * 119.99629 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.46569 * 294.17722 * 14 13 3 30 30 H 1.09004 * 109.46340 * 54.14641 * 14 13 3 31 31 H 1.09007 * 109.50332 * 179.12318 * 15 14 13 32 32 H 1.09007 * 109.50585 * 299.20204 * 15 14 13 33 33 H 1.09007 * 109.47335 * 59.99958 * 18 16 15 34 34 H 1.09000 * 109.47180 * 179.97438 * 18 16 15 35 35 H 1.08996 * 109.47291 * 299.99966 * 18 16 15 36 36 H 1.09000 * 109.47064 * 179.79914 * 20 19 16 37 37 H 1.09005 * 109.46972 * 299.80352 * 20 19 16 38 38 H 1.08999 * 109.46974 * 59.80400 * 20 19 16 39 39 H 0.96701 * 113.99897 * 180.19895 * 21 19 16 40 40 H 1.09001 * 109.46064 * 305.85316 * 22 13 3 41 41 H 1.08995 * 109.46625 * 65.82066 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9782 0.8486 5 6 3.5432 1.4439 0.1075 6 1 4.1399 1.8914 -0.6735 7 6 4.1565 0.8736 1.2027 8 7 3.4298 0.3289 2.1539 9 14 6.0198 0.8747 1.3356 10 1 6.5153 2.2747 1.3353 11 1 6.4265 0.2065 2.5978 12 1 6.5989 0.1445 0.1795 13 7 1.6377 2.1042 -1.2483 14 6 2.3004 1.4907 -2.4063 15 6 1.7501 2.1052 -3.6953 16 6 1.9997 3.6158 -3.6819 17 1 3.0723 3.8076 -3.6552 18 6 1.3977 4.2447 -4.9401 19 6 1.3403 4.2232 -2.4406 20 6 -0.1722 4.0015 -2.5055 21 8 1.6161 5.6244 -2.3913 22 6 1.9025 3.5473 -1.1880 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8614 -0.0719 2.9246 29 1 3.3738 1.6704 -2.3477 30 1 2.1114 0.4172 -2.4062 31 1 2.2533 1.6607 -4.5541 32 1 0.6791 1.9133 -3.7616 33 1 0.3247 4.0544 -4.9637 34 1 1.5755 5.3200 -4.9295 35 1 1.8637 3.8077 -5.8233 36 1 -0.6407 4.4309 -1.6199 37 1 -0.5721 4.4831 -3.3979 38 1 -0.3814 2.9325 -2.5449 39 1 1.2306 6.0745 -1.6271 40 1 1.4246 3.9676 -0.3031 41 1 2.9778 3.7174 -1.1351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:24 Heat of formation + Delta-G solvation = -81.186064 kcal Electronic energy + Delta-G solvation = -19253.332950 eV Core-core repulsion = 16552.705633 eV Total energy + Delta-G solvation = -2700.627318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93797 -38.00237 -35.83141 -34.19337 -32.90073 -31.40632 -29.57883 -28.17906 -26.92288 -24.77047 -23.63200 -23.03770 -20.96026 -19.75836 -18.22850 -17.64820 -17.05380 -16.39194 -16.03659 -15.77384 -15.32722 -14.70421 -14.64016 -14.17266 -13.88668 -13.68930 -13.46693 -13.21736 -13.10164 -12.94862 -12.84115 -12.70065 -12.58578 -12.37797 -12.04092 -11.91397 -11.66481 -11.61889 -11.55097 -11.30143 -11.00437 -10.91189 -10.52616 -10.43502 -8.92201 -8.04628 -6.27175 1.34383 1.35546 1.42596 2.37482 3.12093 3.18195 3.56248 3.83531 3.95585 4.09657 4.36000 4.39059 4.52160 4.58650 4.68671 4.75545 4.78883 4.87985 4.93605 4.94111 4.98491 5.04150 5.11308 5.13015 5.23892 5.30844 5.35693 5.37604 5.45071 5.50290 5.52450 5.62646 5.65969 5.80288 6.08255 6.19751 6.37428 6.63973 6.93891 6.94582 7.43383 8.89434 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.008270 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.101616 B = 3384.900073 C = 3814.763062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.552 4.552 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.941 3.059 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.513 5.513 14 C 0.059 3.941 15 C -0.102 4.102 16 C -0.077 4.077 17 H 0.046 0.954 18 C -0.133 4.133 19 C 0.142 3.858 20 C -0.158 4.158 21 O -0.573 6.573 22 C 0.045 3.955 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.009 0.991 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.386 0.614 40 H 0.055 0.945 41 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 5.031 -10.505 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.591 4.591 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.237 5.237 14 C -0.070 4.070 15 C -0.139 4.139 16 C -0.096 4.096 17 H 0.064 0.936 18 C -0.190 4.190 19 C 0.101 3.899 20 C -0.215 4.215 21 O -0.380 6.380 22 C -0.084 4.084 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.235 0.765 40 H 0.074 0.926 41 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -6.619 4.747 -10.935 13.635 hybrid contribution 2.084 0.125 1.496 2.569 sum -4.535 4.872 -9.439 11.550 Atomic orbital electron populations 1.21563 0.96046 0.99827 1.00790 1.21430 0.94675 0.97903 1.00330 1.19042 0.91425 0.91708 0.86495 0.97987 1.21945 0.94327 1.37482 1.05381 0.93782 1.25561 1.01565 0.95010 0.95547 1.69982 1.36226 1.38708 1.09835 0.85877 0.81851 0.78019 0.77472 1.20476 1.20598 1.19941 1.62344 1.56489 1.01292 1.03615 1.21989 0.95311 0.98883 0.90775 1.21706 1.02508 0.93409 0.96308 1.21069 0.98811 0.95249 0.94485 0.93576 1.21733 1.01316 1.00350 0.95602 1.21122 0.95246 0.80061 0.93430 1.22319 0.93727 1.03508 1.01930 1.86460 1.79630 1.20719 1.51145 1.22514 0.97323 0.90560 0.98039 0.92044 0.93609 0.94984 0.94856 0.92125 0.92891 0.97298 0.91519 0.90061 0.89884 0.91308 0.92888 0.91870 0.92750 0.91042 0.90729 0.76518 0.92614 0.97648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.79 71.98 0.71 -4.12 16 2 C -0.10 -4.91 5.14 30.59 0.16 -4.75 16 3 C 0.22 10.88 1.71 44.17 0.08 10.95 16 4 H 0.00 0.12 7.99 -2.39 -0.02 0.10 16 5 C -0.55 -30.09 7.23 25.60 0.19 -29.91 16 6 H 0.04 2.46 5.84 -2.91 -0.02 2.44 16 7 C 0.02 1.28 5.29 84.66 0.45 1.73 16 8 N -0.91 -51.83 11.30 21.45 0.24 -51.59 16 9 Si 0.94 44.12 29.54 68.60 2.03 46.15 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.51 -20.82 3.31 -875.53 -2.90 -23.72 16 14 C 0.06 2.23 4.78 86.33 0.41 2.64 16 15 C -0.10 -2.92 5.02 30.64 0.15 -2.77 16 16 C -0.08 -2.26 2.29 -10.72 -0.02 -2.28 16 17 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 18 C -0.13 -3.05 8.67 71.98 0.62 -2.43 16 19 C 0.14 4.31 0.84 -10.74 -0.01 4.30 16 20 C -0.16 -4.07 7.96 71.98 0.57 -3.50 16 21 O -0.57 -16.54 12.43 -148.98 -1.85 -18.39 16 22 C 0.04 1.74 4.25 86.32 0.37 2.11 16 23 H 0.06 2.20 7.73 -2.39 -0.02 2.18 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.03 1.52 6.24 -2.38 -0.01 1.51 16 27 H 0.06 3.24 5.97 -2.39 -0.01 3.22 16 28 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 29 H 0.01 0.38 6.38 -2.39 -0.02 0.37 16 30 H 0.07 2.58 6.13 -2.39 -0.01 2.57 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.08 2.18 6.58 -2.38 -0.02 2.17 16 33 H 0.07 1.40 6.38 -2.38 -0.02 1.39 16 34 H 0.05 1.28 7.77 -2.39 -0.02 1.26 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.58 6.40 -2.38 -0.02 1.57 16 38 H 0.07 2.06 6.01 -2.39 -0.01 2.04 16 39 H 0.39 8.48 9.05 -74.06 -0.67 7.81 16 40 H 0.06 2.18 8.02 -2.39 -0.02 2.16 16 41 H 0.01 0.24 7.28 -2.39 -0.02 0.22 16 Total: -1.00 -59.99 301.80 1.52 -58.47 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.33 Total: 17.10 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 3.67 Total: -28.02 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.66 Total: -75.31 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.85 Total: -18.39 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -59.99 1.52 -58.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.719 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds