Wall clock time and date at job start Sun Mar 29 2020 23:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47310 * 2 1 4 4 H 1.08994 * 109.46924 * 302.40976 * 3 2 1 5 5 C 1.50699 * 109.47300 * 182.41256 * 3 2 1 6 6 H 1.08005 * 120.00261 * 239.99973 * 5 3 2 7 7 C 1.37876 * 120.00084 * 59.99534 * 5 3 2 8 8 N 1.31509 * 120.00155 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99950 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47091 * 60.00432 * 9 7 5 11 11 H 1.48496 * 109.47134 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46947 * 300.00324 * 9 7 5 13 13 N 1.46895 * 109.47057 * 62.41010 * 3 2 1 14 14 C 1.46851 * 110.99901 * 189.69642 * 13 3 2 15 15 C 1.53040 * 109.52347 * 174.16059 * 14 13 3 16 16 C 1.53115 * 109.27747 * 59.17871 * 15 14 13 17 17 C 1.53008 * 109.52266 * 62.25423 * 16 15 14 18 18 O 1.42900 * 109.52336 * 182.44005 * 16 15 14 19 19 C 1.53113 * 109.16279 * 302.34613 * 16 15 14 20 20 H 1.08998 * 109.50136 * 297.67232 * 19 16 15 21 21 C 1.53001 * 109.50190 * 177.59525 * 19 16 15 22 22 C 1.46846 * 111.00003 * 65.48907 * 13 3 2 23 23 H 1.08997 * 109.47259 * 174.66241 * 1 2 3 24 24 H 1.09001 * 109.47247 * 294.67005 * 1 2 3 25 25 H 1.09004 * 109.47312 * 54.66530 * 1 2 3 26 26 H 1.09003 * 109.47462 * 240.00106 * 2 1 3 27 27 H 1.09001 * 109.47093 * 119.99564 * 2 1 3 28 28 H 0.96999 * 120.00429 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46040 * 54.14558 * 14 13 3 30 30 H 1.08998 * 109.46754 * 294.17835 * 14 13 3 31 31 H 1.09003 * 109.50191 * 179.12543 * 15 14 13 32 32 H 1.09000 * 109.49871 * 299.20204 * 15 14 13 33 33 H 1.09000 * 109.46977 * 59.99383 * 17 16 15 34 34 H 1.08997 * 109.47001 * 179.97438 * 17 16 15 35 35 H 1.09006 * 109.46217 * 299.99862 * 17 16 15 36 36 H 0.96706 * 114.00003 * 300.00194 * 18 16 15 37 37 H 1.08996 * 109.47267 * 60.00289 * 21 19 16 38 38 H 1.09005 * 109.47188 * 180.02562 * 21 19 16 39 39 H 1.09001 * 109.47512 * 299.99612 * 21 19 16 40 40 H 1.08998 * 109.46184 * 65.82355 * 22 13 3 41 41 H 1.08995 * 109.45342 * 305.84882 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6418 1.9686 -0.8676 5 6 3.5458 1.4429 -0.0598 6 1 4.1177 1.8993 0.7346 7 6 4.1934 0.8606 -1.1286 8 7 3.4972 0.3052 -2.0962 9 14 6.0601 0.8605 -1.2024 10 1 6.6021 0.1432 -0.0205 11 1 6.5064 0.1782 -2.4435 12 1 6.5555 2.2604 -1.2020 13 7 1.5985 2.1180 1.2275 14 6 1.8688 3.5598 1.1610 15 6 1.2674 4.2500 2.3874 16 6 1.8839 3.6541 3.6559 17 6 3.3908 3.9195 3.6654 18 8 1.2849 4.2549 4.8058 19 6 1.6301 2.1443 3.6767 20 1 0.5570 1.9561 3.7100 21 6 2.2948 1.5315 4.9111 22 6 2.2211 1.5151 2.4129 23 1 -0.3633 -1.0232 -0.0956 24 1 -0.3634 0.4289 0.9339 25 1 -0.3634 0.5944 -0.8384 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9527 -0.1042 -2.8484 29 1 1.4214 3.9719 0.2565 30 1 2.9457 3.7270 1.1419 31 1 1.4816 5.3179 2.3456 32 1 0.1884 4.0954 2.3993 33 1 3.5705 4.9944 3.6449 34 1 3.8287 3.4954 4.5689 35 1 3.8463 3.4581 2.7891 36 1 1.4025 5.2135 4.8551 37 1 1.8760 1.9824 5.8107 38 1 2.1142 0.4566 4.9251 39 1 3.3680 1.7187 4.8766 40 1 3.2963 1.6918 2.3879 41 1 2.0294 0.4422 2.4176 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:26 Heat of formation + Delta-G solvation = -62.860832 kcal Electronic energy + Delta-G solvation = -19292.277752 eV Core-core repulsion = 16592.445076 eV Total energy + Delta-G solvation = -2699.832676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62053 -36.56551 -33.96763 -32.33438 -31.64742 -30.24252 -27.76893 -26.47009 -25.42104 -23.41552 -22.34943 -21.07139 -19.19272 -18.28145 -16.60980 -16.20891 -15.34703 -14.92793 -14.49267 -14.29288 -13.72748 -13.31864 -13.04756 -12.72871 -12.52126 -12.09476 -11.87737 -11.68915 -11.60102 -11.38635 -11.26032 -11.07712 -10.91740 -10.84625 -10.67441 -10.50192 -10.16241 -9.96571 -9.79660 -9.64785 -9.34313 -9.30398 -9.03998 -8.37097 -7.07863 -5.99470 -4.13154 3.25824 3.31553 3.33657 4.37614 4.46393 4.95810 5.05238 5.16139 5.24772 5.37902 5.59674 5.78162 5.82661 5.91163 5.94300 6.07925 6.17332 6.24798 6.31169 6.35742 6.39390 6.43421 6.48702 6.59149 6.64181 6.67457 6.74805 6.79931 6.97395 7.13618 7.20407 7.37363 7.61049 7.76694 7.89390 7.99243 8.16196 8.33299 8.48190 8.96857 9.54355 10.99524 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.008669 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.053860 B = 3229.254234 C = 3710.282527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.534 5.534 14 C 0.065 3.935 15 C -0.139 4.139 16 C 0.135 3.865 17 C -0.183 4.183 18 O -0.564 6.564 19 C -0.073 4.073 20 H 0.075 0.925 21 C -0.142 4.142 22 C 0.068 3.932 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.367 0.633 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 5.266 9.226 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.064 4.064 15 C -0.177 4.177 16 C 0.095 3.905 17 C -0.241 4.241 18 O -0.369 6.369 19 C -0.092 4.092 20 H 0.093 0.907 21 C -0.200 4.200 22 C -0.060 4.060 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.213 0.787 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.198 4.471 9.179 10.699 hybrid contribution 2.196 0.712 -0.405 2.344 sum -1.002 5.184 8.774 10.240 Atomic orbital electron populations 1.21691 0.98833 0.98301 1.00573 1.21595 0.92207 0.99152 1.01927 1.19267 0.92585 0.91024 0.86278 0.94454 1.21693 0.92710 1.37491 1.06347 0.92687 1.24899 0.97823 0.95065 0.95548 1.69859 1.35046 1.37543 1.09853 0.86775 0.86368 0.78162 0.77401 1.20328 1.21230 1.20424 1.62388 1.57872 1.01464 1.04083 1.21829 0.98538 0.90098 0.95954 1.22291 1.01453 0.98497 0.95490 1.21243 0.91036 0.93830 0.84351 1.22638 0.96930 1.01181 1.03310 1.86537 1.79678 1.24780 1.45932 1.21151 1.01130 0.91417 0.95530 0.90673 1.21784 1.00438 1.00083 0.97709 1.21996 0.96878 0.98768 0.88369 0.95670 0.93493 0.94236 0.89069 0.94863 0.92835 0.91793 0.94358 0.92576 0.91084 0.93171 0.92020 0.90459 0.78671 0.92501 0.93004 0.92884 0.94003 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.71 37.15 0.36 -2.42 16 2 C -0.11 -2.59 5.09 -26.73 -0.14 -2.72 16 3 C 0.21 5.17 1.73 -68.87 -0.12 5.05 16 4 H 0.04 1.01 7.99 -51.93 -0.42 0.59 16 5 C -0.54 -14.13 7.23 -34.44 -0.25 -14.38 16 6 H 0.06 1.43 5.84 -52.48 -0.31 1.12 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.53 11.30 55.43 0.63 -23.90 16 9 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.53 -10.99 4.05 -228.08 -0.92 -11.91 16 14 C 0.06 1.22 4.94 -3.83 -0.02 1.20 16 15 C -0.14 -2.16 5.22 -26.65 -0.14 -2.30 16 16 C 0.14 2.04 0.84 -90.50 -0.08 1.97 16 17 C -0.18 -2.66 7.82 37.16 0.29 -2.37 16 18 O -0.56 -7.86 12.43 -35.23 -0.44 -8.30 16 19 C -0.07 -1.21 2.39 -90.54 -0.22 -1.43 16 20 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 21 C -0.14 -2.09 8.66 37.16 0.32 -1.77 16 22 C 0.07 1.31 3.82 -3.83 -0.01 1.30 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.92 7.83 -51.93 -0.41 0.51 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 2.39 6.01 -51.93 -0.31 2.08 16 27 H 0.03 0.77 6.31 -51.93 -0.33 0.44 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 30 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.86 6.41 -51.93 -0.33 0.52 16 35 H 0.08 1.29 4.92 -51.93 -0.26 1.04 16 36 H 0.37 3.67 9.05 45.56 0.41 4.08 16 37 H 0.06 0.81 7.76 -51.93 -0.40 0.41 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 40 H 0.04 0.87 4.75 -51.93 -0.25 0.62 16 41 H 0.07 1.48 6.15 -51.93 -0.32 1.16 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -27.29 299.79 -7.38 -34.67 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.05 Total: 5.23 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.09 Total: -16.11 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.30 Total: -35.81 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.44 Total: -8.30 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.29 -7.38 -34.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.190 kcal (2) G-P(sol) polarization free energy of solvation -27.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds