Wall clock time and date at job start Sun Mar 29 2020 23:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47310 * 2 1 4 4 H 1.08994 * 109.46924 * 302.40976 * 3 2 1 5 5 C 1.50699 * 109.47300 * 182.41256 * 3 2 1 6 6 H 1.08005 * 120.00261 * 239.99973 * 5 3 2 7 7 C 1.37876 * 120.00084 * 59.99534 * 5 3 2 8 8 N 1.31509 * 120.00155 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99950 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47091 * 60.00432 * 9 7 5 11 11 H 1.48496 * 109.47134 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46947 * 300.00324 * 9 7 5 13 13 N 1.46895 * 109.47057 * 62.41010 * 3 2 1 14 14 C 1.46851 * 110.99901 * 189.69642 * 13 3 2 15 15 C 1.53040 * 109.52347 * 174.16059 * 14 13 3 16 16 C 1.53115 * 109.27747 * 59.17871 * 15 14 13 17 17 C 1.53008 * 109.52266 * 62.25423 * 16 15 14 18 18 O 1.42900 * 109.52336 * 182.44005 * 16 15 14 19 19 C 1.53113 * 109.16279 * 302.34613 * 16 15 14 20 20 H 1.08998 * 109.50136 * 297.67232 * 19 16 15 21 21 C 1.53001 * 109.50190 * 177.59525 * 19 16 15 22 22 C 1.46846 * 111.00003 * 65.48907 * 13 3 2 23 23 H 1.08997 * 109.47259 * 174.66241 * 1 2 3 24 24 H 1.09001 * 109.47247 * 294.67005 * 1 2 3 25 25 H 1.09004 * 109.47312 * 54.66530 * 1 2 3 26 26 H 1.09003 * 109.47462 * 240.00106 * 2 1 3 27 27 H 1.09001 * 109.47093 * 119.99564 * 2 1 3 28 28 H 0.96999 * 120.00429 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46040 * 54.14558 * 14 13 3 30 30 H 1.08998 * 109.46754 * 294.17835 * 14 13 3 31 31 H 1.09003 * 109.50191 * 179.12543 * 15 14 13 32 32 H 1.09000 * 109.49871 * 299.20204 * 15 14 13 33 33 H 1.09000 * 109.46977 * 59.99383 * 17 16 15 34 34 H 1.08997 * 109.47001 * 179.97438 * 17 16 15 35 35 H 1.09006 * 109.46217 * 299.99862 * 17 16 15 36 36 H 0.96706 * 114.00003 * 300.00194 * 18 16 15 37 37 H 1.08996 * 109.47267 * 60.00289 * 21 19 16 38 38 H 1.09005 * 109.47188 * 180.02562 * 21 19 16 39 39 H 1.09001 * 109.47512 * 299.99612 * 21 19 16 40 40 H 1.08998 * 109.46184 * 65.82355 * 22 13 3 41 41 H 1.08995 * 109.45342 * 305.84882 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6418 1.9686 -0.8676 5 6 3.5458 1.4429 -0.0598 6 1 4.1177 1.8993 0.7346 7 6 4.1934 0.8606 -1.1286 8 7 3.4972 0.3052 -2.0962 9 14 6.0601 0.8605 -1.2024 10 1 6.6021 0.1432 -0.0205 11 1 6.5064 0.1782 -2.4435 12 1 6.5555 2.2604 -1.2020 13 7 1.5985 2.1180 1.2275 14 6 1.8688 3.5598 1.1610 15 6 1.2674 4.2500 2.3874 16 6 1.8839 3.6541 3.6559 17 6 3.3908 3.9195 3.6654 18 8 1.2849 4.2549 4.8058 19 6 1.6301 2.1443 3.6767 20 1 0.5570 1.9561 3.7100 21 6 2.2948 1.5315 4.9111 22 6 2.2211 1.5151 2.4129 23 1 -0.3633 -1.0232 -0.0956 24 1 -0.3634 0.4289 0.9339 25 1 -0.3634 0.5944 -0.8384 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9527 -0.1042 -2.8484 29 1 1.4214 3.9719 0.2565 30 1 2.9457 3.7270 1.1419 31 1 1.4816 5.3179 2.3456 32 1 0.1884 4.0954 2.3993 33 1 3.5705 4.9944 3.6449 34 1 3.8287 3.4954 4.5689 35 1 3.8463 3.4581 2.7891 36 1 1.4025 5.2135 4.8551 37 1 1.8760 1.9824 5.8107 38 1 2.1142 0.4566 4.9251 39 1 3.3680 1.7187 4.8766 40 1 3.2963 1.6918 2.3879 41 1 2.0294 0.4422 2.4176 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166668.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:26 Heat of formation + Delta-G solvation = -81.047301 kcal Electronic energy + Delta-G solvation = -19293.066376 eV Core-core repulsion = 16592.445076 eV Total energy + Delta-G solvation = -2700.621300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01123 -38.09180 -35.49990 -33.93185 -33.37658 -31.73722 -29.19119 -28.13134 -26.92334 -25.15773 -23.85760 -22.54573 -21.01479 -19.72632 -18.23767 -17.69910 -16.93579 -16.50508 -15.99970 -15.78405 -15.35321 -14.89358 -14.68950 -14.12195 -13.81993 -13.66601 -13.44446 -13.26760 -13.03175 -12.88138 -12.81356 -12.71758 -12.53548 -12.38795 -12.18492 -12.07955 -11.76387 -11.59408 -11.51086 -11.32458 -10.93916 -10.86238 -10.58906 -10.41465 -8.85301 -8.01258 -6.24163 1.37356 1.38547 1.45202 2.39949 3.16355 3.27889 3.47886 3.80945 3.86743 4.12035 4.27014 4.48422 4.50408 4.57352 4.64022 4.70650 4.75033 4.78008 4.86830 4.92552 4.97730 5.01623 5.04745 5.12093 5.18528 5.25391 5.33889 5.34918 5.42364 5.45006 5.52501 5.58113 5.65526 5.80919 6.08556 6.22384 6.41892 6.71807 6.97218 6.98189 7.46578 8.93038 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.008669 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.053860 B = 3229.254234 C = 3710.282527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.533 5.533 14 C 0.064 3.936 15 C -0.129 4.129 16 C 0.143 3.857 17 C -0.178 4.178 18 O -0.567 6.567 19 C -0.071 4.071 20 H 0.067 0.933 21 C -0.137 4.137 22 C 0.076 3.924 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.388 0.612 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 6.246 11.006 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.168 4.168 16 C 0.102 3.898 17 C -0.236 4.236 18 O -0.374 6.374 19 C -0.090 4.090 20 H 0.086 0.914 21 C -0.194 4.194 22 C -0.052 4.052 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.237 0.763 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.128 5.477 10.979 12.662 hybrid contribution 2.146 0.445 -0.943 2.386 sum -0.982 5.922 10.036 11.694 Atomic orbital electron populations 1.21547 0.96348 0.99531 1.00711 1.21441 0.94393 0.98292 1.00264 1.19033 0.91550 0.91335 0.86745 0.97938 1.21934 0.93879 1.36888 1.06058 0.93068 1.25591 1.01725 0.95035 0.95436 1.69990 1.36423 1.38313 1.10294 0.85860 0.81736 0.78178 0.77364 1.19917 1.21022 1.20023 1.62347 1.57681 1.02420 1.03192 1.21866 0.97884 0.89169 0.97552 1.22222 1.00892 0.99747 0.93891 1.21014 0.91415 0.92795 0.84560 1.22571 0.96178 1.02502 1.02319 1.86496 1.79443 1.26729 1.44778 1.21073 1.00484 0.92855 0.94613 0.91435 1.21733 1.00387 1.00334 0.96966 1.21920 0.95988 0.98208 0.89123 0.93733 0.92667 0.94801 0.91997 0.95098 0.92981 0.92805 0.95789 0.89751 0.91370 0.90954 0.91309 0.93167 0.76297 0.91520 0.92605 0.92673 0.95632 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.71 71.98 0.70 -4.31 16 2 C -0.11 -5.04 5.09 30.59 0.16 -4.89 16 3 C 0.22 10.92 1.73 44.17 0.08 11.00 16 4 H 0.00 0.15 7.99 -2.39 -0.02 0.13 16 5 C -0.55 -29.16 7.23 25.60 0.18 -28.97 16 6 H 0.05 2.72 5.84 -2.91 -0.02 2.70 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -51.74 11.30 21.45 0.24 -51.50 16 9 Si 0.94 43.14 29.54 68.60 2.03 45.17 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.53 -22.11 4.05 -875.51 -3.54 -25.66 16 14 C 0.06 2.40 4.94 86.33 0.43 2.82 16 15 C -0.13 -3.74 5.22 30.65 0.16 -3.58 16 16 C 0.14 3.95 0.84 -10.71 -0.01 3.94 16 17 C -0.18 -4.76 7.82 71.98 0.56 -4.20 16 18 O -0.57 -13.69 12.43 -148.98 -1.85 -15.55 16 19 C -0.07 -2.24 2.39 -10.74 -0.03 -2.27 16 20 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 21 C -0.14 -3.73 8.66 71.98 0.62 -3.11 16 22 C 0.08 2.91 3.82 86.33 0.33 3.24 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 2.12 7.83 -2.39 -0.02 2.10 16 25 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.06 3.34 6.01 -2.39 -0.01 3.32 16 27 H 0.03 1.45 6.31 -2.39 -0.02 1.44 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.05 2.09 8.02 -2.38 -0.02 2.07 16 30 H 0.02 0.97 5.64 -2.39 -0.01 0.95 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.73 6.41 -2.39 -0.02 1.71 16 35 H 0.05 1.63 4.92 -2.38 -0.01 1.62 16 36 H 0.39 6.05 9.05 -74.05 -0.67 5.38 16 37 H 0.07 1.70 7.76 -2.39 -0.02 1.69 16 38 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.05 1.47 6.40 -2.39 -0.02 1.46 16 40 H 0.03 1.07 4.75 -2.39 -0.01 1.06 16 41 H 0.06 2.43 6.15 -2.39 -0.01 2.41 16 Total: -1.00 -58.78 299.79 0.85 -57.94 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.34 Total: 18.28 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 3.63 Total: -28.67 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.30 Total: -77.16 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -1.85 Total: -15.55 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -58.78 0.85 -57.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166668.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.110 kcal (2) G-P(sol) polarization free energy of solvation -58.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds