Wall clock time and date at job start Sun Mar 29 2020 23:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46931 * 2 1 4 4 H 1.09004 * 109.47284 * 303.52810 * 3 2 1 5 5 C 1.50700 * 109.46999 * 183.52428 * 3 2 1 6 6 H 1.07996 * 119.99701 * 301.49616 * 5 3 2 7 7 C 1.37877 * 119.99838 * 121.50475 * 5 3 2 8 8 N 1.31516 * 119.99598 * 173.06733 * 7 5 3 9 9 Si 1.86797 * 120.00098 * 353.06478 * 7 5 3 10 10 H 1.48498 * 109.47185 * 84.89460 * 9 7 5 11 11 H 1.48498 * 109.47266 * 204.89267 * 9 7 5 12 12 H 1.48503 * 109.47175 * 324.89724 * 9 7 5 13 13 N 1.46904 * 109.46945 * 63.52212 * 3 2 1 14 14 C 1.46850 * 110.99900 * 65.79255 * 13 3 2 15 15 C 1.53035 * 109.52378 * 185.84059 * 14 13 3 16 16 C 1.53127 * 109.30753 * 300.83598 * 15 14 13 17 17 C 1.52995 * 109.55292 * 177.52026 * 16 15 14 18 18 O 1.42902 * 109.49368 * 297.71339 * 16 15 14 19 19 C 1.53116 * 109.15724 * 57.59813 * 16 15 14 20 20 H 1.09000 * 109.50480 * 62.36556 * 19 16 15 21 21 C 1.53001 * 109.50637 * 182.44162 * 19 16 15 22 22 C 1.46843 * 110.99924 * 189.99710 * 13 3 2 23 23 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47429 * 299.99738 * 1 2 3 25 25 H 1.09001 * 109.47308 * 60.00129 * 1 2 3 26 26 H 1.09001 * 109.46818 * 240.00437 * 2 1 3 27 27 H 1.08997 * 109.46831 * 119.99946 * 2 1 3 28 28 H 0.97009 * 119.99542 * 179.97438 * 8 7 5 29 29 H 1.09007 * 109.45619 * 305.85311 * 14 13 3 30 30 H 1.08997 * 109.46392 * 65.82018 * 14 13 3 31 31 H 1.09001 * 109.50666 * 60.75727 * 15 14 13 32 32 H 1.08997 * 109.50063 * 180.84200 * 15 14 13 33 33 H 1.09004 * 109.47323 * 300.29645 * 17 16 15 34 34 H 1.08995 * 109.47339 * 60.30576 * 17 16 15 35 35 H 1.09001 * 109.47218 * 180.29991 * 17 16 15 36 36 H 0.96699 * 113.99483 * 299.66354 * 18 16 15 37 37 H 1.08995 * 109.47441 * 179.91796 * 21 19 16 38 38 H 1.08998 * 109.47242 * 299.92525 * 21 19 16 39 39 H 1.09006 * 109.46663 * 59.91926 * 21 19 16 40 40 H 1.09004 * 109.46389 * 54.14942 * 22 13 3 41 41 H 1.09000 * 109.45629 * 294.17497 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9743 -0.8567 5 6 3.5445 1.4435 -0.0873 6 1 4.1294 0.9389 0.6674 7 6 4.1740 2.0886 -1.1306 8 7 5.4838 2.2073 -1.1358 9 14 3.1667 2.7939 -2.5367 10 1 2.6881 4.1511 -2.1707 11 1 4.0100 2.8785 -3.7561 12 1 2.0009 1.9127 -2.8012 13 7 1.6210 2.1100 1.2398 14 6 2.2707 1.5042 2.4091 15 6 1.7033 2.1243 3.6879 16 6 1.9492 3.6356 3.6700 17 6 1.3297 4.2700 4.9168 18 8 3.3553 3.8898 3.6518 19 6 1.3046 4.2347 2.4170 20 1 0.2268 4.0753 2.4505 21 6 1.5973 5.7354 2.3596 22 6 1.8835 3.5533 1.1749 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.9268 2.6609 -1.8700 29 1 2.0840 0.4302 2.4124 30 1 3.3444 1.6859 2.3627 31 1 0.6319 1.9311 3.7418 32 1 2.1965 1.6851 4.5551 33 1 0.2577 4.0727 4.9305 34 1 1.7891 3.8430 5.8082 35 1 1.5008 5.3463 4.9001 36 1 3.8286 3.5373 4.4178 37 1 1.1395 6.1610 1.4668 38 1 1.1861 6.2199 3.2451 39 1 2.6752 5.8942 2.3262 40 1 1.4155 3.9679 0.2820 41 1 2.9591 3.7253 1.1345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:28 Heat of formation + Delta-G solvation = -64.483778 kcal Electronic energy + Delta-G solvation = -19385.313096 eV Core-core repulsion = 16685.410044 eV Total energy + Delta-G solvation = -2699.903052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.41098 -36.48558 -33.68443 -32.19049 -31.64736 -31.01431 -28.23267 -26.64232 -25.29038 -22.84460 -21.83161 -21.55062 -19.22967 -18.66996 -16.93271 -15.68860 -15.41529 -14.60184 -14.44811 -14.20965 -13.86227 -13.49289 -13.05943 -12.80602 -12.54595 -12.15634 -12.10097 -11.88702 -11.74797 -11.59793 -11.17366 -11.13846 -10.97579 -10.90184 -10.74197 -10.37106 -10.17409 -9.97253 -9.76708 -9.66638 -9.44538 -9.19549 -9.02511 -8.52778 -6.96231 -6.08076 -4.08139 3.28126 3.36436 3.38211 4.41081 4.59927 4.96752 5.06806 5.16741 5.24276 5.36428 5.62430 5.72770 5.81849 5.95030 5.97220 6.01499 6.09865 6.11676 6.12921 6.20813 6.29757 6.32133 6.35512 6.52454 6.53560 6.67686 6.76316 6.77418 6.81114 7.02909 7.05530 7.21044 7.24002 7.32738 7.70982 8.10848 8.22633 8.37383 8.55989 8.97492 9.56944 11.05096 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.009975 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.053769 B = 2806.469846 C = 3259.743825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.172 3.828 4 H 0.042 0.958 5 C -0.534 4.534 6 H 0.074 0.926 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.533 5.533 14 C 0.065 3.935 15 C -0.140 4.140 16 C 0.135 3.865 17 C -0.177 4.177 18 O -0.547 6.547 19 C -0.071 4.071 20 H 0.076 0.924 21 C -0.143 4.143 22 C 0.069 3.931 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.366 0.634 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 2.607 9.136 13.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 C 0.066 3.934 4 H 0.060 0.940 5 C -0.573 4.573 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.191 1.191 13 N -0.257 5.257 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.094 3.906 17 C -0.234 4.234 18 O -0.351 6.351 19 C -0.090 4.090 20 H 0.094 0.906 21 C -0.201 4.201 22 C -0.059 4.059 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.212 0.788 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.485 2.898 8.500 13.061 hybrid contribution 0.619 0.213 -0.385 0.759 sum -8.866 3.111 8.114 12.415 Atomic orbital electron populations 1.21747 0.97776 0.99065 1.01457 1.21608 0.93495 0.98664 1.00591 1.19742 0.94275 0.90998 0.88429 0.93956 1.21509 0.90463 1.34529 1.10797 0.90822 1.25082 0.94666 0.95042 0.97739 1.69932 1.08304 1.42850 1.32153 0.86965 0.80515 0.80072 0.82583 1.20052 1.21654 1.19080 1.62579 1.57202 1.02103 1.03862 1.21761 0.98212 0.97429 0.88944 1.22293 1.01603 0.95358 0.98543 1.21184 0.81461 0.93626 0.94324 1.22532 1.01331 1.01636 0.97918 1.86661 1.19065 1.81044 1.48362 1.21137 0.99090 0.94638 0.94092 0.90595 1.21765 1.02548 0.95303 1.00443 1.21795 1.00370 0.88983 0.94772 0.94986 0.92201 0.94173 0.92919 0.93095 0.92765 0.92117 0.92925 0.91432 0.92602 0.92028 0.92968 0.91946 0.78815 0.93264 0.93253 0.91812 0.93003 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.79 37.16 0.36 -2.18 16 2 C -0.11 -2.20 5.29 -26.73 -0.14 -2.34 16 3 C 0.17 4.02 1.70 -68.86 -0.12 3.91 16 4 H 0.04 1.04 4.58 -51.93 -0.24 0.81 16 5 C -0.53 -14.65 7.09 -34.44 -0.24 -14.89 16 6 H 0.07 2.22 7.09 -52.49 -0.37 1.85 16 7 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16 9 Si 0.87 21.77 26.98 -169.99 -4.59 17.18 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.42 6.75 56.52 0.38 -6.04 16 13 N -0.53 -11.16 3.99 -228.07 -0.91 -12.07 16 14 C 0.06 1.27 4.57 -3.83 -0.02 1.25 16 15 C -0.14 -2.16 5.08 -26.65 -0.14 -2.30 16 16 C 0.13 2.05 0.67 -90.50 -0.06 1.98 16 17 C -0.18 -2.12 8.53 37.15 0.32 -1.80 16 18 O -0.55 -9.15 11.08 -35.23 -0.39 -9.54 16 19 C -0.07 -1.18 2.22 -90.54 -0.20 -1.38 16 20 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 21 C -0.14 -2.19 8.74 37.16 0.32 -1.86 16 22 C 0.07 1.45 4.34 -3.83 -0.02 1.44 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.05 1.04 6.28 -51.93 -0.33 0.71 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.06 1.17 6.15 -51.93 -0.32 0.85 16 30 H 0.05 1.21 6.34 -51.93 -0.33 0.88 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.74 6.50 -51.93 -0.34 0.40 16 36 H 0.37 4.72 9.05 45.56 0.41 5.13 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.64 6.51 -51.93 -0.34 0.30 16 39 H 0.06 1.08 7.63 -51.93 -0.40 0.68 16 40 H 0.05 1.11 8.02 -51.93 -0.42 0.69 16 41 H 0.06 1.41 7.22 -51.93 -0.37 1.04 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -30.00 305.10 -6.94 -36.94 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.39 Total: 5.46 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.03 Total: -16.05 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.14 Total: -38.59 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.39 Total: -9.54 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.59 Total: 17.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.00 -6.94 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.543 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds