Wall clock time and date at job start Sun Mar 29 2020 23:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47124 * 2 1 4 4 H 1.08998 * 109.47124 * 305.00493 * 3 2 1 5 5 C 1.50700 * 109.47112 * 185.00036 * 3 2 1 6 6 H 1.08001 * 120.00000 * 240.00135 * 5 3 2 7 7 C 1.37875 * 119.99549 * 60.00408 * 5 3 2 8 8 N 1.31512 * 120.00586 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99443 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47403 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46903 * 120.00226 * 9 7 5 12 12 H 1.48503 * 109.46784 * 239.99557 * 9 7 5 13 13 N 1.46906 * 109.46848 * 65.00325 * 3 2 1 14 14 C 1.46844 * 110.99887 * 66.04525 * 13 3 2 15 15 C 1.53045 * 109.52143 * 185.83959 * 14 13 3 16 16 C 1.53120 * 109.27382 * 300.82250 * 15 14 13 17 17 C 1.53004 * 109.52226 * 297.74535 * 16 15 14 18 18 O 1.42906 * 109.51783 * 177.62585 * 16 15 14 19 19 C 1.53112 * 109.16707 * 57.65353 * 16 15 14 20 20 H 1.09007 * 109.50291 * 62.32136 * 19 16 15 21 21 C 1.52994 * 109.50583 * 182.40039 * 19 16 15 22 22 C 1.46853 * 110.99832 * 190.25648 * 13 3 2 23 23 H 1.08999 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46961 * 299.99951 * 1 2 3 25 25 H 1.09003 * 109.47109 * 59.99434 * 1 2 3 26 26 H 1.09001 * 109.46646 * 240.00492 * 2 1 3 27 27 H 1.08994 * 109.46944 * 120.00400 * 2 1 3 28 28 H 0.96993 * 120.00158 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46299 * 305.85220 * 14 13 3 30 30 H 1.08997 * 109.46352 * 65.82665 * 14 13 3 31 31 H 1.08996 * 109.50312 * 60.75518 * 15 14 13 32 32 H 1.08994 * 109.50179 * 180.87913 * 15 14 13 33 33 H 1.09002 * 109.46896 * 60.00668 * 17 16 15 34 34 H 1.08998 * 109.46894 * 180.02562 * 17 16 15 35 35 H 1.09000 * 109.47215 * 300.00785 * 17 16 15 36 36 H 0.96700 * 114.00308 * 59.99721 * 18 16 15 37 37 H 1.09000 * 109.47082 * 60.00785 * 21 19 16 38 38 H 1.09002 * 109.47309 * 179.97438 * 21 19 16 39 39 H 1.09000 * 109.47564 * 300.00024 * 21 19 16 40 40 H 1.09001 * 109.46125 * 294.17808 * 22 13 3 41 41 H 1.09003 * 109.46462 * 54.14202 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5473 -0.1948 11 1 6.4970 -0.5175 -1.4632 12 1 6.3989 1.6168 -2.6104 13 7 1.6514 2.0992 1.2553 14 6 2.3340 1.4873 2.4025 15 6 1.7982 2.0959 3.7005 16 6 2.0387 3.6080 3.6867 17 6 3.5421 3.8861 3.6287 18 8 1.4909 4.1894 4.8717 19 6 1.3583 4.2140 2.4562 20 1 0.2824 4.0502 2.5175 21 6 1.6440 5.7161 2.4023 22 6 1.9068 3.5441 1.1943 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.8292 -0.0617 -2.9495 29 1 2.1514 0.4127 2.4028 30 1 3.4054 1.6735 2.3293 31 1 0.7293 1.8982 3.7811 32 1 2.3160 1.6527 4.5511 33 1 3.9586 3.4442 2.7235 34 1 3.7123 4.9627 3.6194 35 1 4.0264 3.4495 4.5022 36 1 1.8741 3.8474 5.6910 37 1 2.7199 5.8793 2.3395 38 1 1.1598 6.1469 1.5259 39 1 1.2562 6.1923 3.3029 40 1 2.9803 3.7206 1.1267 41 1 1.4140 3.9633 0.3171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:30 Heat of formation + Delta-G solvation = -80.934975 kcal Electronic energy + Delta-G solvation = -19253.900676 eV Core-core repulsion = 16553.284246 eV Total energy + Delta-G solvation = -2700.616430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00619 -38.09837 -35.57299 -33.99179 -32.97501 -32.05084 -29.20664 -28.21262 -26.74336 -25.15540 -23.51028 -23.18389 -20.79712 -19.65269 -18.29598 -17.60059 -17.06402 -16.48317 -16.20700 -15.54359 -15.44591 -14.91214 -14.54450 -14.19265 -13.78536 -13.73741 -13.45224 -13.24481 -13.06342 -12.92091 -12.85062 -12.72483 -12.46143 -12.31475 -12.23322 -11.93789 -11.83911 -11.68240 -11.52409 -11.27135 -10.96090 -10.90695 -10.55446 -10.40025 -8.85420 -8.01466 -6.24472 1.34972 1.38526 1.47198 2.39641 3.16000 3.27392 3.47261 3.80003 3.87888 4.11793 4.26506 4.48551 4.51416 4.58441 4.59656 4.73494 4.75645 4.76744 4.86745 4.91902 4.98202 5.00829 5.04387 5.11081 5.18740 5.28460 5.30862 5.34790 5.42722 5.44963 5.52439 5.57023 5.66665 5.81045 6.09091 6.21954 6.42075 6.71816 6.97484 6.97942 7.46405 8.92965 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.008582 C = 0.007398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.784868 B = 3261.857065 C = 3784.063928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.533 5.533 14 C 0.066 3.934 15 C -0.132 4.132 16 C 0.143 3.857 17 C -0.178 4.178 18 O -0.567 6.567 19 C -0.069 4.069 20 H 0.068 0.932 21 C -0.137 4.137 22 C 0.073 3.927 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.388 0.612 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 5.320 11.666 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.256 5.256 14 C -0.062 4.062 15 C -0.170 4.170 16 C 0.102 3.898 17 C -0.236 4.236 18 O -0.375 6.375 19 C -0.088 4.088 20 H 0.086 0.914 21 C -0.194 4.194 22 C -0.055 4.055 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.237 0.763 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.689 5.487 11.118 12.687 hybrid contribution 2.287 -0.497 -0.502 2.393 sum -0.402 4.990 10.616 11.738 Atomic orbital electron populations 1.21568 0.96449 0.99729 1.00572 1.21441 0.94387 0.98248 1.00319 1.19039 0.91896 0.91510 0.86297 0.98058 1.21994 0.93985 1.37394 1.05156 0.93010 1.25597 1.01567 0.95076 0.95634 1.70005 1.36106 1.39087 1.09847 0.85737 0.81758 0.77663 0.77848 1.19523 1.20700 1.20937 1.62342 1.56977 1.02391 1.03928 1.21879 0.95855 0.98426 0.90069 1.22260 1.02001 0.95524 0.97252 1.21010 0.92048 0.91313 0.85389 1.22570 0.95966 1.02596 1.02431 1.86488 1.67012 1.67896 1.16063 1.21029 0.99961 0.95616 0.92164 0.91356 1.21736 1.01628 0.94066 1.01995 1.21915 0.97961 0.88973 0.96696 0.93601 0.92545 0.94989 0.91974 0.94883 0.93007 0.92165 0.95621 0.91413 0.89884 0.93207 0.91259 0.91020 0.76282 0.92605 0.92545 0.91485 0.95795 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.80 71.98 0.71 -4.38 16 2 C -0.11 -5.02 5.17 30.60 0.16 -4.86 16 3 C 0.22 10.88 1.70 44.17 0.08 10.95 16 4 H 0.00 0.08 7.98 -2.39 -0.02 0.06 16 5 C -0.55 -29.00 7.23 25.60 0.19 -28.81 16 6 H 0.05 2.75 5.84 -2.91 -0.02 2.73 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -51.71 11.29 21.45 0.24 -51.47 16 9 Si 0.94 43.16 29.54 68.60 2.03 45.18 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 N -0.53 -22.11 4.06 -875.49 -3.55 -25.67 16 14 C 0.07 2.48 4.53 86.33 0.39 2.87 16 15 C -0.13 -3.85 5.22 30.65 0.16 -3.69 16 16 C 0.14 3.96 0.84 -10.71 -0.01 3.95 16 17 C -0.18 -4.77 7.82 71.98 0.56 -4.21 16 18 O -0.57 -13.71 12.43 -148.98 -1.85 -15.56 16 19 C -0.07 -2.15 2.39 -10.75 -0.03 -2.18 16 20 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 21 C -0.14 -3.68 8.66 71.98 0.62 -3.05 16 22 C 0.07 2.81 4.23 86.32 0.36 3.18 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.06 3.34 5.95 -2.39 -0.01 3.33 16 27 H 0.03 1.53 6.23 -2.39 -0.01 1.51 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.06 2.36 6.13 -2.39 -0.01 2.35 16 30 H 0.03 1.05 4.73 -2.39 -0.01 1.04 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.63 4.92 -2.39 -0.01 1.61 16 34 H 0.07 1.73 6.41 -2.39 -0.02 1.72 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.39 6.09 9.05 -74.06 -0.67 5.42 16 37 H 0.05 1.47 6.40 -2.39 -0.02 1.45 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.69 7.76 -2.39 -0.02 1.67 16 40 H 0.02 0.99 5.68 -2.39 -0.01 0.98 16 41 H 0.05 2.16 8.01 -2.39 -0.02 2.14 16 Total: -1.00 -58.83 299.69 0.85 -57.98 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.34 Total: 18.18 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 3.64 Total: -28.65 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -3.31 Total: -77.13 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -1.85 Total: -15.56 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -58.83 0.85 -57.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.954 kcal (2) G-P(sol) polarization free energy of solvation -58.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds