Wall clock time and date at job start Sun Mar 29 2020 23:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 H 1.08996 * 109.47356 * 302.40828 * 3 2 1 5 5 C 1.50704 * 109.47393 * 182.41243 * 3 2 1 6 6 H 1.08001 * 120.00317 * 240.00685 * 5 3 2 7 7 C 1.37873 * 119.99941 * 59.99418 * 5 3 2 8 8 N 1.31516 * 120.00470 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00169 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47007 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47409 * 119.99943 * 9 7 5 12 12 H 1.48500 * 109.46879 * 240.00565 * 9 7 5 13 13 N 1.46896 * 109.47578 * 62.41310 * 3 2 1 14 14 C 1.46849 * 111.00393 * 189.69250 * 13 3 2 15 15 C 1.53038 * 109.52273 * 174.16006 * 14 13 3 16 16 C 1.53117 * 109.28180 * 59.17669 * 15 14 13 17 17 C 1.52995 * 109.52463 * 182.44045 * 16 15 14 18 18 O 1.42900 * 109.52188 * 62.31425 * 16 15 14 19 19 C 1.53119 * 109.16208 * 302.34503 * 16 15 14 20 20 H 1.09005 * 109.50385 * 297.67932 * 19 16 15 21 21 C 1.52997 * 109.50689 * 177.59394 * 19 16 15 22 22 C 1.46849 * 111.00276 * 65.47460 * 13 3 2 23 23 H 1.08991 * 109.47176 * 174.66421 * 1 2 3 24 24 H 1.08995 * 109.46954 * 294.67041 * 1 2 3 25 25 H 1.09006 * 109.47014 * 54.66121 * 1 2 3 26 26 H 1.09001 * 109.47269 * 240.00062 * 2 1 3 27 27 H 1.09000 * 109.47275 * 119.99472 * 2 1 3 28 28 H 0.96991 * 120.00387 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.45715 * 294.17067 * 14 13 3 30 30 H 1.08990 * 109.46101 * 54.15151 * 14 13 3 31 31 H 1.08999 * 109.50291 * 179.11843 * 15 14 13 32 32 H 1.09003 * 109.50402 * 299.19355 * 15 14 13 33 33 H 1.09004 * 109.47219 * 60.00343 * 17 16 15 34 34 H 1.08996 * 109.47362 * 179.97438 * 17 16 15 35 35 H 1.09005 * 109.47438 * 300.00336 * 17 16 15 36 36 H 0.96700 * 114.00183 * 60.00194 * 18 16 15 37 37 H 1.08997 * 109.46794 * 59.99692 * 21 19 16 38 38 H 1.09001 * 109.47227 * 180.02562 * 21 19 16 39 39 H 1.08998 * 109.46960 * 300.00583 * 21 19 16 40 40 H 1.09000 * 109.46423 * 305.86722 * 22 13 3 41 41 H 1.09009 * 109.45615 * 65.82963 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6418 1.9687 -0.8676 5 6 3.5458 1.4430 -0.0598 6 1 4.1177 1.8993 0.7346 7 6 4.1935 0.8606 -1.1286 8 7 3.4972 0.3052 -2.0962 9 14 6.0601 0.8606 -1.2025 10 1 6.6030 1.5439 -0.0010 11 1 6.5539 -0.5393 -1.2418 12 1 6.5071 1.5778 -2.4235 13 7 1.5986 2.1180 1.2275 14 6 1.8689 3.5599 1.1611 15 6 1.2676 4.2500 2.3875 16 6 1.8840 3.6540 3.6561 17 6 1.2426 4.2973 4.8872 18 8 3.2911 3.9030 3.6656 19 6 1.6301 2.1442 3.6768 20 1 0.5569 1.9560 3.7100 21 6 2.2946 1.5313 4.9111 22 6 2.2210 1.5150 2.4130 23 1 -0.3633 -1.0231 -0.0956 24 1 -0.3633 0.4289 0.9338 25 1 -0.3633 0.5944 -0.8384 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.9528 -0.1042 -2.8483 29 1 2.9459 3.7268 1.1421 30 1 1.4215 3.9720 0.2567 31 1 1.4819 5.3179 2.3458 32 1 0.1886 4.0956 2.3994 33 1 0.1697 4.1049 4.8803 34 1 1.6817 3.8721 5.7896 35 1 1.4190 5.3728 4.8687 36 1 3.5247 4.8413 3.6491 37 1 1.8759 1.9822 5.8108 38 1 2.1139 0.4564 4.9251 39 1 3.3678 1.7185 4.8767 40 1 2.0294 0.4420 2.4177 41 1 3.2963 1.6917 2.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:32 Heat of formation + Delta-G solvation = -83.772626 kcal Electronic energy + Delta-G solvation = -19268.103212 eV Core-core repulsion = 16567.363732 eV Total energy + Delta-G solvation = -2700.739479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82752 -38.02668 -35.23479 -34.01264 -33.30732 -32.05894 -29.43250 -27.99319 -26.93984 -24.83226 -23.42591 -22.40694 -20.97710 -20.55590 -18.40393 -17.09224 -16.97405 -16.28602 -15.89730 -15.75908 -15.18404 -14.91622 -14.75634 -14.36008 -13.84864 -13.58260 -13.36049 -13.26469 -12.96247 -12.86310 -12.76202 -12.66176 -12.56228 -12.41239 -12.22444 -12.01590 -11.64553 -11.60775 -11.49584 -11.44518 -11.00453 -10.74549 -10.47544 -10.42607 -8.86094 -8.02714 -6.25014 1.32199 1.35175 1.45864 2.38739 3.13951 3.35451 3.57973 3.87656 3.91756 4.07794 4.29416 4.54397 4.61503 4.67280 4.73206 4.74275 4.77096 4.78951 4.89625 4.93998 4.99270 5.07444 5.08151 5.11596 5.19189 5.29642 5.36489 5.39460 5.44448 5.47434 5.53424 5.61483 5.68294 5.80627 6.08737 6.24027 6.42974 6.74167 6.97702 7.03388 7.45354 8.91505 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.008676 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.252598 B = 3226.571699 C = 3707.542935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.545 4.545 6 H 0.044 0.956 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.528 5.528 14 C 0.066 3.934 15 C -0.130 4.130 16 C 0.133 3.867 17 C -0.167 4.167 18 O -0.574 6.574 19 C -0.073 4.073 20 H 0.088 0.912 21 C -0.135 4.135 22 C 0.080 3.920 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.012 0.988 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.382 0.618 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 6.744 12.588 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.205 1.205 13 N -0.251 5.251 14 C -0.062 4.062 15 C -0.168 4.168 16 C 0.093 3.907 17 C -0.224 4.224 18 O -0.381 6.381 19 C -0.092 4.092 20 H 0.107 0.893 21 C -0.193 4.193 22 C -0.049 4.049 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.230 0.770 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -5.858 5.941 12.464 14.999 hybrid contribution 2.165 0.464 -0.884 2.384 sum -3.692 6.405 11.580 13.739 Atomic orbital electron populations 1.21534 0.95983 0.99606 1.00857 1.21428 0.94694 0.98140 1.00099 1.19037 0.91333 0.91467 0.86966 0.98066 1.22000 0.94189 1.36459 1.05790 0.93775 1.25590 1.01785 0.95103 0.95447 1.70000 1.36183 1.38581 1.10329 0.85736 0.81814 0.77775 0.77688 1.20189 1.20433 1.20474 1.62388 1.57221 1.02439 1.03060 1.21778 0.97427 0.89299 0.97741 1.22246 1.01277 0.99426 0.93875 1.21244 0.80663 0.94767 0.94015 1.22414 1.01676 1.01145 0.97165 1.86592 1.23495 1.30911 1.97115 1.21212 1.00492 0.93206 0.94293 0.89345 1.21697 1.00375 1.00250 0.96960 1.21790 0.95642 0.97550 0.89906 0.93645 0.92386 0.94747 0.92108 0.95354 0.92958 0.97011 0.93289 0.89937 0.90095 0.90768 0.91481 0.91099 0.76984 0.90544 0.92862 0.93873 0.93080 0.97130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.71 71.98 0.70 -4.28 16 2 C -0.11 -5.18 5.09 30.59 0.16 -5.02 16 3 C 0.22 11.33 1.73 44.17 0.08 11.41 16 4 H 0.00 0.08 7.99 -2.39 -0.02 0.06 16 5 C -0.55 -30.83 7.23 25.60 0.18 -30.64 16 6 H 0.04 2.59 5.84 -2.91 -0.02 2.58 16 7 C 0.02 1.15 5.30 84.65 0.45 1.60 16 8 N -0.91 -53.33 11.30 21.45 0.24 -53.08 16 9 Si 0.94 45.39 29.54 68.60 2.03 47.42 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.53 -22.78 4.05 -875.51 -3.54 -26.32 16 14 C 0.07 2.61 5.05 86.33 0.44 3.05 16 15 C -0.13 -3.67 5.08 30.65 0.16 -3.52 16 16 C 0.13 3.57 0.67 -10.72 -0.01 3.56 16 17 C -0.17 -3.15 8.52 71.98 0.61 -2.53 16 18 O -0.57 -17.08 11.09 -148.98 -1.65 -18.73 16 19 C -0.07 -2.25 2.22 -10.74 -0.02 -2.27 16 20 H 0.09 2.54 8.14 -2.38 -0.02 2.53 16 21 C -0.14 -3.67 8.74 71.98 0.63 -3.04 16 22 C 0.08 3.26 3.93 86.33 0.34 3.60 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.20 7.83 -2.39 -0.02 2.18 16 25 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 3.37 6.01 -2.39 -0.01 3.35 16 27 H 0.03 1.38 6.31 -2.39 -0.02 1.37 16 28 H 0.26 14.51 8.31 -92.72 -0.77 13.74 16 29 H 0.01 0.52 6.89 -2.39 -0.02 0.51 16 30 H 0.05 1.98 8.02 -2.39 -0.02 1.96 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 1.24 6.52 -2.39 -0.02 1.22 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.38 8.22 9.05 -74.06 -0.67 7.55 16 37 H 0.08 1.65 6.51 -2.39 -0.02 1.63 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.04 1.32 7.63 -2.39 -0.02 1.30 16 40 H 0.05 2.19 6.15 -2.39 -0.01 2.18 16 41 H 0.01 0.50 6.01 -2.38 -0.01 0.49 16 Total: -1.00 -63.93 304.77 1.11 -62.82 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.33 Total: 16.00 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.71 Total: -28.10 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -3.30 Total: -79.41 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.65 Total: -18.73 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -63.93 1.11 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.954 kcal (2) G-P(sol) polarization free energy of solvation -63.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds