Wall clock time and date at job start Sun Mar 29 2020 23:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47009 * 2 1 4 4 H 1.09003 * 109.47272 * 304.16584 * 3 2 1 5 5 C 1.50705 * 109.47158 * 184.17145 * 3 2 1 6 6 H 1.07999 * 119.99937 * 239.99776 * 5 3 2 7 7 C 1.37881 * 120.00085 * 59.99514 * 5 3 2 8 8 N 1.31515 * 119.99667 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00036 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46922 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.46918 * 300.00280 * 9 7 5 12 12 H 1.48499 * 109.46846 * 60.00056 * 9 7 5 13 13 N 1.46898 * 109.47568 * 64.16880 * 3 2 1 14 14 C 1.46906 * 110.99922 * 74.07255 * 13 3 2 15 15 C 1.46897 * 111.00460 * 198.02753 * 13 3 2 16 16 H 1.09002 * 109.47068 * 48.16709 * 15 13 3 17 17 C 1.52997 * 109.47631 * 168.17421 * 15 13 3 18 18 C 1.52994 * 109.47544 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47188 * 300.00202 * 18 17 15 20 20 H 1.09000 * 109.47266 * 299.99788 * 19 18 17 21 21 O 1.42900 * 109.47076 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.47186 * 59.99854 * 19 18 17 23 23 C 1.53001 * 109.47048 * 299.99709 * 22 19 18 24 24 H 1.09001 * 109.47189 * 54.95351 * 1 2 3 25 25 H 1.09005 * 109.47340 * 174.95528 * 1 2 3 26 26 H 1.09003 * 109.47313 * 294.95256 * 1 2 3 27 27 H 1.08993 * 109.46746 * 239.99525 * 2 1 3 28 28 H 1.09004 * 109.46851 * 119.99618 * 2 1 3 29 29 H 0.97003 * 119.99598 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46909 * 60.00052 * 14 13 3 31 31 H 1.08996 * 109.47185 * 180.02562 * 14 13 3 32 32 H 1.08993 * 109.47192 * 300.00460 * 14 13 3 33 33 H 1.09003 * 109.46862 * 300.00107 * 17 15 13 34 34 H 1.08999 * 109.46982 * 59.99455 * 17 15 13 35 35 H 1.09006 * 109.47224 * 60.00067 * 18 17 15 36 36 H 1.08997 * 109.47541 * 179.97438 * 18 17 15 37 37 H 0.96700 * 114.00092 * 180.02562 * 21 19 18 38 38 H 1.08993 * 109.47248 * 60.00148 * 22 19 18 39 39 H 1.09003 * 109.47005 * 180.02562 * 22 19 18 40 40 H 1.08993 * 109.47454 * 300.00313 * 23 22 19 41 41 H 1.08997 * 109.46958 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6169 1.9774 -0.8503 5 6 3.5435 1.4437 -0.1034 6 1 4.1381 1.8921 0.6788 7 6 4.1599 0.8725 -1.1964 8 7 3.4357 0.3269 -2.1491 9 14 6.0235 0.8734 -1.3242 10 1 6.4335 0.2040 -2.5847 11 1 6.5188 2.2733 -1.3238 12 1 6.5993 0.1443 -0.1658 13 7 1.6343 2.1053 1.2465 14 6 2.4383 1.6309 2.3809 15 6 1.7171 3.5662 1.1171 16 1 1.2304 3.8773 0.1927 17 6 1.0178 4.2244 2.3082 18 6 1.1047 5.7459 2.1737 19 6 2.5737 6.1724 2.1455 20 1 3.0603 5.8610 3.0698 21 8 2.6548 7.5935 2.0192 22 6 3.2730 5.5144 0.9543 23 6 3.1862 3.9927 1.0889 24 1 -0.3633 0.5901 -0.8413 25 1 -0.3634 -1.0237 -0.0904 26 1 -0.3634 0.4335 0.9318 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8693 -0.0747 -2.9182 30 1 3.4904 1.8475 2.1962 31 1 2.1169 2.1374 3.2910 32 1 2.3037 0.5556 2.4970 33 1 -0.0287 3.9201 2.3286 34 1 1.5046 3.9133 3.2325 35 1 0.6181 6.0573 1.2493 36 1 0.6061 6.2147 3.0220 37 1 3.5591 7.9352 1.9944 38 1 2.7865 5.8257 0.0300 39 1 4.3197 5.8179 0.9345 40 1 3.6727 3.6814 2.0132 41 1 3.6848 3.5240 0.2405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:24 Heat of formation + Delta-G solvation = -59.638942 kcal Electronic energy + Delta-G solvation = -19043.138762 eV Core-core repulsion = 16343.445798 eV Total energy + Delta-G solvation = -2699.692964 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23803 -37.03519 -34.60199 -32.36371 -31.12882 -30.39370 -27.73420 -26.68031 -25.06105 -22.71945 -22.21585 -20.94642 -19.28590 -18.59652 -17.03732 -16.36095 -15.41773 -15.21336 -14.41806 -14.23499 -13.57884 -13.35274 -13.10173 -12.84179 -12.58061 -12.15031 -11.86099 -11.75062 -11.49848 -11.28077 -11.08099 -10.93993 -10.82547 -10.72218 -10.57639 -10.39200 -10.13560 -9.95285 -9.84590 -9.59667 -9.42298 -9.26820 -8.78848 -8.36367 -7.04849 -6.00057 -4.10885 3.24692 3.30860 3.32799 4.34601 4.36886 4.98481 5.02952 5.18069 5.31641 5.49099 5.59679 5.68029 5.81820 5.84673 5.98395 6.15701 6.25334 6.29976 6.35801 6.38836 6.45546 6.49356 6.52068 6.59285 6.70522 6.74449 6.83195 6.92697 7.16889 7.21575 7.23581 7.43063 7.62133 7.75001 7.78145 8.01471 8.16482 8.35534 8.51898 8.97730 9.53850 10.99257 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.008847 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.468848 B = 3164.184543 C = 4079.428783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.213 3.787 4 H 0.035 0.965 5 C -0.544 4.544 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.883 3.117 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.534 5.534 14 C 0.030 3.970 15 C 0.096 3.904 16 H 0.069 0.931 17 C -0.108 4.108 18 C -0.107 4.107 19 C 0.103 3.897 20 H 0.049 0.951 21 O -0.575 6.575 22 C -0.146 4.146 23 C -0.161 4.161 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.373 0.627 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 7.166 6.999 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.583 4.583 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.711 3.289 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.256 5.256 14 C -0.119 4.119 15 C -0.013 4.013 16 H 0.088 0.912 17 C -0.146 4.146 18 C -0.145 4.145 19 C 0.045 3.955 20 H 0.067 0.933 21 O -0.380 6.380 22 C -0.185 4.185 23 C -0.199 4.199 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.219 0.781 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.659 6.849 6.899 10.078 hybrid contribution 2.659 0.174 -0.327 2.685 sum 0.001 7.022 6.572 9.618 Atomic orbital electron populations 1.21693 0.98981 0.98255 1.00443 1.21545 0.92121 0.99259 1.01727 1.19285 0.92978 0.91127 0.85948 0.94738 1.21913 0.92933 1.37582 1.05869 0.91329 1.24933 0.97589 0.95121 0.95860 1.69873 1.34876 1.37891 1.09520 0.86809 0.86516 0.78205 0.77392 1.21296 1.20379 1.20358 1.62607 1.53586 1.03035 1.06350 1.22271 0.97062 0.99753 0.92800 1.21487 0.93662 0.89184 0.96993 0.91242 1.21570 1.01350 0.92567 0.99090 1.21439 0.94416 0.96322 1.02330 1.21928 0.97115 0.79523 0.96923 0.93324 1.86477 1.32392 1.22143 1.97031 1.22247 0.99581 0.97925 0.98726 1.22665 0.99607 0.93195 1.04469 0.94340 0.95740 0.93522 0.89160 0.95055 0.92881 0.94258 0.94348 0.92632 0.91250 0.92283 0.91493 0.92029 0.78086 0.91581 0.92781 0.92733 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.52 5.26 -26.73 -0.14 -2.66 16 3 C 0.21 5.04 1.67 -68.87 -0.12 4.92 16 4 H 0.03 0.92 7.74 -51.93 -0.40 0.52 16 5 C -0.54 -13.65 5.59 -34.44 -0.19 -13.85 16 6 H 0.07 1.69 4.18 -52.49 -0.22 1.47 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.22 11.30 55.43 0.63 -23.60 16 9 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 N -0.53 -10.80 4.15 -228.30 -0.95 -11.74 16 14 C 0.03 0.57 8.05 60.07 0.48 1.05 16 15 C 0.10 1.75 2.18 -67.71 -0.15 1.60 16 16 H 0.07 1.36 7.80 -51.93 -0.40 0.96 16 17 C -0.11 -1.65 5.17 -26.74 -0.14 -1.78 16 18 C -0.11 -1.52 5.57 -26.74 -0.15 -1.67 16 19 C 0.10 1.45 3.47 -26.73 -0.09 1.36 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 O -0.58 -7.75 13.32 -35.23 -0.47 -8.22 16 22 C -0.15 -2.25 5.54 -26.73 -0.15 -2.39 16 23 C -0.16 -2.90 3.69 -26.73 -0.10 -2.99 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 27 H 0.09 2.36 5.97 -51.93 -0.31 2.05 16 28 H 0.03 0.72 6.72 -51.93 -0.35 0.37 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.04 0.80 4.38 -51.93 -0.23 0.57 16 31 H 0.04 0.64 6.37 -51.93 -0.33 0.31 16 32 H 0.05 1.09 6.73 -51.93 -0.35 0.74 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.88 6.53 -51.93 -0.34 0.55 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.37 3.49 9.08 45.56 0.41 3.90 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.97 6.40 -51.93 -0.33 0.64 16 41 H 0.11 2.39 5.07 -51.93 -0.26 2.12 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -26.82 299.15 -7.81 -34.63 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.04 Total: 6.10 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.47 Total: -17.15 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.32 Total: -35.34 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.47 Total: -8.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.82 -7.81 -34.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.008 kcal (2) G-P(sol) polarization free energy of solvation -26.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds