Wall clock time and date at job start Sun Mar 29 2020 23:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47009 * 2 1 4 4 H 1.09003 * 109.47272 * 304.16584 * 3 2 1 5 5 C 1.50705 * 109.47158 * 184.17145 * 3 2 1 6 6 H 1.07999 * 119.99937 * 239.99776 * 5 3 2 7 7 C 1.37881 * 120.00085 * 59.99514 * 5 3 2 8 8 N 1.31515 * 119.99667 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00036 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46922 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.46918 * 300.00280 * 9 7 5 12 12 H 1.48499 * 109.46846 * 60.00056 * 9 7 5 13 13 N 1.46898 * 109.47568 * 64.16880 * 3 2 1 14 14 C 1.46906 * 110.99922 * 74.07255 * 13 3 2 15 15 C 1.46897 * 111.00460 * 198.02753 * 13 3 2 16 16 H 1.09002 * 109.47068 * 48.16709 * 15 13 3 17 17 C 1.52997 * 109.47631 * 168.17421 * 15 13 3 18 18 C 1.52994 * 109.47544 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47188 * 300.00202 * 18 17 15 20 20 H 1.09000 * 109.47266 * 299.99788 * 19 18 17 21 21 O 1.42900 * 109.47076 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.47186 * 59.99854 * 19 18 17 23 23 C 1.53001 * 109.47048 * 299.99709 * 22 19 18 24 24 H 1.09001 * 109.47189 * 54.95351 * 1 2 3 25 25 H 1.09005 * 109.47340 * 174.95528 * 1 2 3 26 26 H 1.09003 * 109.47313 * 294.95256 * 1 2 3 27 27 H 1.08993 * 109.46746 * 239.99525 * 2 1 3 28 28 H 1.09004 * 109.46851 * 119.99618 * 2 1 3 29 29 H 0.97003 * 119.99598 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46909 * 60.00052 * 14 13 3 31 31 H 1.08996 * 109.47185 * 180.02562 * 14 13 3 32 32 H 1.08993 * 109.47192 * 300.00460 * 14 13 3 33 33 H 1.09003 * 109.46862 * 300.00107 * 17 15 13 34 34 H 1.08999 * 109.46982 * 59.99455 * 17 15 13 35 35 H 1.09006 * 109.47224 * 60.00067 * 18 17 15 36 36 H 1.08997 * 109.47541 * 179.97438 * 18 17 15 37 37 H 0.96700 * 114.00092 * 180.02562 * 21 19 18 38 38 H 1.08993 * 109.47248 * 60.00148 * 22 19 18 39 39 H 1.09003 * 109.47005 * 180.02562 * 22 19 18 40 40 H 1.08993 * 109.47454 * 300.00313 * 23 22 19 41 41 H 1.08997 * 109.46958 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6169 1.9774 -0.8503 5 6 3.5435 1.4437 -0.1034 6 1 4.1381 1.8921 0.6788 7 6 4.1599 0.8725 -1.1964 8 7 3.4357 0.3269 -2.1491 9 14 6.0235 0.8734 -1.3242 10 1 6.4335 0.2040 -2.5847 11 1 6.5188 2.2733 -1.3238 12 1 6.5993 0.1443 -0.1658 13 7 1.6343 2.1053 1.2465 14 6 2.4383 1.6309 2.3809 15 6 1.7171 3.5662 1.1171 16 1 1.2304 3.8773 0.1927 17 6 1.0178 4.2244 2.3082 18 6 1.1047 5.7459 2.1737 19 6 2.5737 6.1724 2.1455 20 1 3.0603 5.8610 3.0698 21 8 2.6548 7.5935 2.0192 22 6 3.2730 5.5144 0.9543 23 6 3.1862 3.9927 1.0889 24 1 -0.3633 0.5901 -0.8413 25 1 -0.3634 -1.0237 -0.0904 26 1 -0.3634 0.4335 0.9318 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8693 -0.0747 -2.9182 30 1 3.4904 1.8475 2.1962 31 1 2.1169 2.1374 3.2910 32 1 2.3037 0.5556 2.4970 33 1 -0.0287 3.9201 2.3286 34 1 1.5046 3.9133 3.2325 35 1 0.6181 6.0573 1.2493 36 1 0.6061 6.2147 3.0220 37 1 3.5591 7.9352 1.9944 38 1 2.7865 5.8257 0.0300 39 1 4.3197 5.8179 0.9345 40 1 3.6727 3.6814 2.0132 41 1 3.6848 3.5240 0.2405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:23 Heat of formation + Delta-G solvation = -77.448073 kcal Electronic energy + Delta-G solvation = -19043.911024 eV Core-core repulsion = 16343.445798 eV Total energy + Delta-G solvation = -2700.465226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65389 -38.40979 -36.04809 -34.15280 -32.84040 -31.70028 -29.17828 -28.47134 -26.73280 -24.39023 -23.59555 -22.32581 -20.86978 -20.16194 -18.36743 -18.04362 -17.06600 -16.72482 -16.07301 -15.46264 -15.12972 -14.95421 -14.58619 -14.39947 -14.20803 -13.65835 -13.34152 -13.16576 -12.98386 -12.93495 -12.75899 -12.43928 -12.39846 -12.32162 -12.24956 -11.85100 -11.77012 -11.49014 -11.41382 -11.15698 -11.03845 -10.86504 -10.46416 -10.31116 -8.77083 -7.97474 -6.15595 1.38560 1.40269 1.45874 2.42327 3.19983 3.28539 3.55853 3.82505 3.99358 4.23899 4.30996 4.39834 4.54670 4.56957 4.60127 4.62352 4.76148 4.80688 4.92196 4.95871 5.00943 5.07773 5.15363 5.17365 5.18847 5.28502 5.36173 5.37508 5.44845 5.55872 5.58863 5.68739 5.73902 5.84718 6.14330 6.26453 6.48098 6.78482 6.90313 7.03541 7.51696 8.97651 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.008847 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.468848 B = 3164.184543 C = 4079.428783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.220 3.780 4 H -0.004 1.004 5 C -0.540 4.540 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.938 3.062 10 H -0.290 1.290 11 H -0.274 1.274 12 H -0.273 1.273 13 N -0.533 5.533 14 C 0.034 3.966 15 C 0.094 3.906 16 H 0.046 0.954 17 C -0.095 4.095 18 C -0.105 4.105 19 C 0.111 3.889 20 H 0.063 0.937 21 O -0.584 6.584 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.029 0.971 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.258 0.742 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.391 0.609 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 8.285 9.063 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.578 4.578 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.765 3.235 10 H -0.216 1.216 11 H -0.199 1.199 12 H -0.199 1.199 13 N -0.255 5.255 14 C -0.114 4.114 15 C -0.015 4.015 16 H 0.065 0.935 17 C -0.133 4.133 18 C -0.143 4.143 19 C 0.053 3.947 20 H 0.081 0.919 21 O -0.392 6.392 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.241 0.759 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.474 7.990 8.979 12.271 hybrid contribution 2.593 -0.122 -0.963 2.769 sum 0.119 7.868 8.016 11.233 Atomic orbital electron populations 1.21552 0.96577 0.99400 1.00622 1.21404 0.94266 0.98577 1.00061 1.19032 0.92090 0.91188 0.86388 0.98575 1.22200 0.93886 1.36222 1.05534 0.90907 1.25611 1.01223 0.95393 0.95943 1.70017 1.36160 1.39202 1.10038 0.85919 0.82254 0.78184 0.77134 1.21621 1.19920 1.19869 1.62554 1.53579 1.04208 1.05165 1.22262 0.96136 0.99682 0.93305 1.21543 0.94161 0.88090 0.97721 0.93535 1.21445 1.01143 0.93141 0.97595 1.21417 0.94877 0.95374 1.02669 1.21791 0.96687 0.79867 0.96392 0.91938 1.86443 1.34330 1.21455 1.96966 1.22186 1.00662 0.95944 0.99155 1.22432 0.98849 0.95004 1.02821 0.95153 0.93913 0.92411 0.92217 0.95178 0.93288 0.95529 0.91256 0.93366 0.90878 0.91160 0.92424 0.90214 0.75927 0.92925 0.91441 0.92165 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.73 71.98 0.70 -4.30 16 2 C -0.10 -4.95 5.26 30.59 0.16 -4.79 16 3 C 0.22 10.66 1.67 44.17 0.07 10.73 16 4 H 0.00 -0.21 7.74 -2.39 -0.02 -0.22 16 5 C -0.54 -27.55 5.59 25.60 0.14 -27.41 16 6 H 0.07 3.60 4.18 -2.91 -0.01 3.59 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -51.79 11.30 21.45 0.24 -51.55 16 9 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.53 -21.32 4.15 -876.20 -3.64 -24.96 16 14 C 0.03 1.26 8.05 127.69 1.03 2.29 16 15 C 0.09 3.37 2.18 44.92 0.10 3.47 16 16 H 0.05 1.87 7.80 -2.39 -0.02 1.85 16 17 C -0.10 -2.67 5.17 30.59 0.16 -2.52 16 18 C -0.11 -2.71 5.57 30.59 0.17 -2.53 16 19 C 0.11 2.79 3.47 30.59 0.11 2.90 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 O -0.58 -13.91 13.32 -148.98 -1.98 -15.89 16 22 C -0.14 -4.12 5.54 30.59 0.17 -3.95 16 23 C -0.15 -5.38 3.69 30.60 0.11 -5.27 16 24 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.06 2.18 7.87 -2.39 -0.02 2.16 16 27 H 0.06 3.22 5.97 -2.39 -0.01 3.20 16 28 H 0.03 1.39 6.72 -2.38 -0.02 1.38 16 29 H 0.26 14.13 8.31 -92.71 -0.77 13.35 16 30 H 0.03 1.04 4.38 -2.39 -0.01 1.03 16 31 H 0.07 2.11 6.37 -2.39 -0.02 2.09 16 32 H 0.05 1.82 6.73 -2.39 -0.02 1.81 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.84 6.53 -2.39 -0.02 1.82 16 35 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.39 6.03 9.08 -74.06 -0.67 5.36 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 2.04 6.40 -2.39 -0.02 2.03 16 41 H 0.07 3.11 5.07 -2.39 -0.01 3.09 16 Total: -1.00 -58.02 299.15 0.36 -57.67 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.34 Total: 20.09 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.37 Total: -29.99 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.39 Total: -76.51 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.98 Total: -15.89 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -58.02 0.36 -57.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.782 kcal (2) G-P(sol) polarization free energy of solvation -58.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds