Wall clock time and date at job start Sun Mar 29 2020 23:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47036 * 2 1 4 4 H 1.08999 * 109.47447 * 56.01639 * 3 2 1 5 5 C 1.50704 * 109.47096 * 176.01306 * 3 2 1 6 6 H 1.08000 * 120.00212 * 114.33362 * 5 3 2 7 7 C 1.37880 * 119.99952 * 294.33987 * 5 3 2 8 8 N 1.31523 * 119.99945 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00300 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47093 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47353 * 119.99489 * 9 7 5 12 12 H 1.48497 * 109.47417 * 239.99640 * 9 7 5 13 13 N 1.46900 * 109.47170 * 296.00834 * 3 2 1 14 14 C 1.46896 * 111.00058 * 287.92968 * 13 3 2 15 15 C 1.46903 * 111.00072 * 163.97298 * 13 3 2 16 16 H 1.09000 * 109.46535 * 316.22110 * 15 13 3 17 17 C 1.52995 * 109.47272 * 76.22151 * 15 13 3 18 18 C 1.52993 * 109.47224 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47268 * 300.00158 * 18 17 15 20 20 H 1.09003 * 109.47042 * 299.99993 * 19 18 17 21 21 O 1.42903 * 109.47138 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.46936 * 60.00029 * 19 18 17 23 23 C 1.52999 * 109.46931 * 196.22425 * 15 13 3 24 24 H 1.09002 * 109.47272 * 185.09116 * 1 2 3 25 25 H 1.08997 * 109.47396 * 305.09587 * 1 2 3 26 26 H 1.09003 * 109.46897 * 65.09765 * 1 2 3 27 27 H 1.08998 * 109.47253 * 239.99869 * 2 1 3 28 28 H 1.09004 * 109.46893 * 119.99725 * 2 1 3 29 29 H 0.96997 * 119.99768 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47010 * 296.06898 * 14 13 3 31 31 H 1.08996 * 109.47412 * 56.07326 * 14 13 3 32 32 H 1.09004 * 109.46933 * 176.07776 * 14 13 3 33 33 H 1.09003 * 109.47031 * 300.00267 * 17 15 13 34 34 H 1.09003 * 109.46987 * 60.00137 * 17 15 13 35 35 H 1.09000 * 109.47395 * 180.02562 * 18 17 15 36 36 H 1.09003 * 109.47083 * 60.00126 * 18 17 15 37 37 H 0.96699 * 114.00123 * 59.99972 * 21 19 18 38 38 H 1.09002 * 109.47175 * 180.02562 * 22 19 18 39 39 H 1.08994 * 109.47130 * 60.00185 * 22 19 18 40 40 H 1.08994 * 109.47190 * 299.99947 * 23 15 13 41 41 H 1.09000 * 109.46956 * 59.99824 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6195 1.9765 0.8521 5 6 3.5438 1.4436 0.0988 6 1 4.1388 1.8096 -0.7249 7 6 4.1600 0.9774 1.2407 8 7 3.4354 0.5321 2.2439 9 14 6.0239 0.9794 1.3635 10 1 6.6020 1.5270 0.1100 11 1 6.4434 1.8222 2.5120 12 1 6.5082 -0.4097 1.5659 13 7 1.6306 2.1066 -1.2447 14 6 2.3986 1.5990 -2.3894 15 6 1.7589 3.5655 -1.1299 16 1 1.3692 3.8896 -0.1649 17 6 3.2333 3.9582 -1.2425 18 6 3.3671 5.4775 -1.1222 19 6 2.5731 6.1498 -2.2441 20 1 2.9627 5.8260 -3.2093 21 8 2.6975 7.5689 -2.1314 22 6 1.0987 5.7571 -2.1314 23 6 0.9651 4.2371 -2.2522 24 1 -0.3634 -1.0236 0.0912 25 1 -0.3634 0.5908 0.8408 26 1 -0.3633 0.4327 -0.9322 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8689 0.2044 3.0474 30 1 3.4519 1.8477 -2.2592 31 1 2.2858 0.5167 -2.4515 32 1 2.0282 2.0563 -3.3070 33 1 3.7989 3.4796 -0.4429 34 1 3.6230 3.6340 -2.2075 35 1 4.4174 5.7574 -1.2029 36 1 2.9775 5.8013 -0.1570 37 1 3.6075 7.8902 -2.1938 38 1 0.5331 6.2356 -2.9310 39 1 0.7092 6.0808 -1.1663 40 1 1.3547 3.9130 -3.2171 41 1 -0.0853 3.9573 -2.1719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:26 Heat of formation + Delta-G solvation = -61.207422 kcal Electronic energy + Delta-G solvation = -19036.113497 eV Core-core repulsion = 16336.352519 eV Total energy + Delta-G solvation = -2699.760979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.22155 -37.03412 -34.59843 -32.34298 -31.19062 -30.37166 -27.72362 -26.70214 -25.05741 -22.73467 -22.21430 -20.95665 -19.26462 -18.61275 -17.03331 -16.37508 -15.42538 -15.22701 -14.40658 -14.22554 -13.57181 -13.36426 -13.09853 -12.85459 -12.58561 -12.16043 -11.86216 -11.73304 -11.53332 -11.25633 -11.11395 -10.94470 -10.80607 -10.74172 -10.54752 -10.39941 -10.15227 -9.95432 -9.82326 -9.62862 -9.45134 -9.28908 -8.79070 -8.38060 -7.05719 -6.01758 -4.11156 3.22769 3.32282 3.33679 4.35208 4.36946 4.98517 5.03738 5.19567 5.30274 5.49439 5.61312 5.68332 5.83321 5.85636 5.98890 6.16272 6.25898 6.30056 6.34515 6.39304 6.44921 6.46925 6.51562 6.58276 6.67252 6.73811 6.81610 6.91645 7.13559 7.20318 7.22747 7.40810 7.60545 7.75038 7.75748 7.96367 8.15561 8.32927 8.50317 8.98339 9.53753 10.99443 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020943 B = 0.008950 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.640914 B = 3127.902341 C = 4060.495684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.212 3.788 4 H 0.039 0.961 5 C -0.543 4.543 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.881 3.119 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.030 3.970 15 C 0.097 3.903 16 H 0.070 0.930 17 C -0.161 4.161 18 C -0.146 4.146 19 C 0.103 3.897 20 H 0.049 0.951 21 O -0.575 6.575 22 C -0.107 4.107 23 C -0.106 4.106 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.260 0.740 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.373 0.627 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 6.798 -7.449 10.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.087 0.913 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.709 3.291 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.256 5.256 14 C -0.119 4.119 15 C -0.012 4.012 16 H 0.088 0.912 17 C -0.200 4.200 18 C -0.184 4.184 19 C 0.045 3.955 20 H 0.067 0.933 21 O -0.380 6.380 22 C -0.145 4.145 23 C -0.145 4.145 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.219 0.781 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.723 6.532 -7.275 10.149 hybrid contribution 2.673 0.122 0.289 2.692 sum -0.049 6.654 -6.985 9.648 Atomic orbital electron populations 1.21693 0.98797 0.98321 1.00609 1.21500 0.92320 0.99305 1.01100 1.19319 0.93032 0.90983 0.86159 0.94266 1.21959 0.92889 1.41968 1.01388 0.91311 1.24942 0.97562 0.95120 0.95898 1.69933 1.34762 1.41966 1.05494 0.86713 0.86610 0.77748 0.77985 1.19902 1.21094 1.21045 1.62588 1.54561 1.02569 1.05857 1.22267 0.97063 0.99766 0.92778 1.21461 0.93055 0.89191 0.97499 0.91195 1.22645 0.99968 0.93403 1.03965 1.22239 0.99084 0.97828 0.99292 1.21931 0.96845 0.79571 0.97135 0.93334 1.86480 1.32351 1.22574 1.96625 1.21455 0.94209 0.96480 1.02391 1.21558 1.01048 0.92485 0.99364 0.95707 0.94213 0.93387 0.94872 0.90214 0.93000 0.94426 0.92510 0.94389 0.87155 0.92709 0.92797 0.91533 0.78103 0.92043 0.91473 0.92394 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.73 37.16 0.36 -2.39 16 2 C -0.10 -2.40 5.28 -26.73 -0.14 -2.54 16 3 C 0.21 4.99 1.59 -68.86 -0.11 4.88 16 4 H 0.04 1.05 7.72 -51.93 -0.40 0.65 16 5 C -0.54 -13.64 5.69 -34.44 -0.20 -13.83 16 6 H 0.07 1.71 4.27 -52.49 -0.22 1.48 16 7 C 0.07 1.77 5.31 -17.82 -0.09 1.68 16 8 N -0.88 -24.33 11.74 55.43 0.65 -23.68 16 9 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -10.76 4.12 -228.30 -0.94 -11.70 16 14 C 0.03 0.57 8.00 60.06 0.48 1.05 16 15 C 0.10 1.78 2.16 -67.71 -0.15 1.63 16 16 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 17 C -0.16 -2.90 3.79 -26.74 -0.10 -3.00 16 18 C -0.15 -2.24 5.54 -26.73 -0.15 -2.39 16 19 C 0.10 1.45 3.47 -26.73 -0.09 1.36 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 O -0.57 -7.76 13.32 -35.23 -0.47 -8.23 16 22 C -0.11 -1.53 5.57 -26.70 -0.15 -1.68 16 23 C -0.11 -1.63 5.26 -26.70 -0.14 -1.77 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.92 7.87 -51.93 -0.41 0.52 16 27 H 0.03 0.75 6.56 -51.93 -0.34 0.41 16 28 H 0.08 2.06 6.46 -51.93 -0.34 1.73 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 30 H 0.04 0.75 4.31 -51.93 -0.22 0.53 16 31 H 0.06 1.11 6.50 -51.93 -0.34 0.77 16 32 H 0.04 0.63 6.72 -51.93 -0.35 0.28 16 33 H 0.11 2.36 4.94 -51.93 -0.26 2.11 16 34 H 0.05 0.97 6.32 -51.93 -0.33 0.64 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.37 3.49 9.08 45.56 0.41 3.90 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.87 6.78 -51.93 -0.35 0.52 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 300.13 15.07 4.52 4.52 Total: -1.00 -26.96 300.13 -7.80 -34.75 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.06 Total: 5.85 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.48 Total: -17.01 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.29 Total: -35.39 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.47 Total: -8.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.96 -7.80 -34.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.453 kcal (2) G-P(sol) polarization free energy of solvation -26.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds