Wall clock time and date at job start Sun Mar 29 2020 23:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46975 * 2 1 4 4 H 1.08997 * 109.47271 * 305.23970 * 3 2 1 5 5 C 1.50699 * 109.47100 * 185.23967 * 3 2 1 6 6 H 1.08003 * 120.00229 * 268.30550 * 5 3 2 7 7 C 1.37880 * 119.99982 * 88.30242 * 5 3 2 8 8 N 1.31511 * 119.99997 * 353.33361 * 7 5 3 9 9 Si 1.86798 * 119.99935 * 173.32485 * 7 5 3 10 10 H 1.48499 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47362 * 240.00407 * 9 7 5 12 12 H 1.48499 * 109.46814 * 120.00185 * 9 7 5 13 13 N 1.46901 * 109.47177 * 65.24328 * 3 2 1 14 14 C 1.44292 * 111.00349 * 66.04417 * 13 3 2 15 15 C 1.53986 * 108.31970 * 221.35074 * 14 13 3 16 16 C 1.45873 * 112.66380 * 278.60203 * 15 14 13 17 17 C 1.54523 * 111.67521 * 61.49658 * 16 15 14 18 18 H 1.08998 * 109.56985 * 42.69721 * 17 16 15 19 19 O 1.42897 * 109.57419 * 162.94604 * 17 16 15 20 20 C 1.50536 * 108.86333 * 282.75986 * 17 16 15 21 21 H 1.09004 * 108.79013 * 330.97417 * 20 17 16 22 22 C 1.52998 * 108.79165 * 212.63878 * 20 17 16 23 23 C 1.47950 * 110.99674 * 193.46391 * 13 3 2 24 24 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46962 * 299.99484 * 1 2 3 26 26 H 1.08995 * 109.47032 * 60.00102 * 1 2 3 27 27 H 1.08997 * 109.46811 * 239.99984 * 2 1 3 28 28 H 1.09002 * 109.46743 * 120.00178 * 2 1 3 29 29 H 0.96999 * 119.99969 * 354.53463 * 8 7 5 30 30 H 1.09001 * 109.69690 * 341.06082 * 14 13 3 31 31 H 1.09005 * 109.70092 * 101.64544 * 14 13 3 32 32 H 1.09003 * 108.84236 * 39.42235 * 15 14 13 33 33 H 1.08995 * 108.84593 * 157.77842 * 15 14 13 34 34 H 1.08998 * 109.04232 * 182.06214 * 16 15 14 35 35 H 1.09002 * 109.03997 * 301.00572 * 16 15 14 36 36 H 0.96705 * 114.00173 * 299.99951 * 19 17 16 37 37 H 1.09004 * 109.46831 * 59.99843 * 22 20 17 38 38 H 1.08999 * 109.47319 * 179.97438 * 22 20 17 39 39 H 1.08997 * 109.47462 * 300.00527 * 22 20 17 40 40 H 1.08998 * 108.71418 * 313.17162 * 23 13 3 41 41 H 1.09000 * 108.71212 * 71.19436 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6021 1.9826 -0.8393 5 6 3.5414 1.4445 -0.1298 6 1 4.1600 1.4444 0.7556 7 6 4.1254 1.4463 -1.3787 8 7 3.3794 1.3142 -2.4537 9 14 5.9763 1.6369 -1.5440 10 1 6.5830 1.7670 -0.1949 11 1 6.2795 2.8514 -2.3428 12 1 6.5378 0.4431 -2.2258 13 7 1.6564 2.0974 1.2577 14 6 2.3314 1.4947 2.3816 15 6 1.3246 1.3679 3.5397 16 6 1.1648 2.6120 4.2844 17 6 0.6217 3.7477 3.3883 18 1 -0.1749 3.3618 2.7523 19 8 0.1119 4.8017 4.2076 20 6 1.7442 4.2718 2.5330 21 1 2.6851 4.1349 3.0661 22 6 1.5261 5.7674 2.2958 23 6 1.8415 3.5627 1.1703 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.4299 1.1361 -2.3662 30 1 2.6977 0.5065 2.1033 31 1 3.1671 2.1236 2.6887 32 1 0.3566 1.0735 3.1340 33 1 1.6689 0.5908 4.2221 34 1 0.4708 2.4466 5.1084 35 1 2.1318 2.9111 4.6888 36 1 -0.6092 4.5315 4.7926 37 1 1.5160 6.2894 3.2527 38 1 2.3338 6.1588 1.6773 39 1 0.5732 5.9198 1.7889 40 1 2.8218 3.7662 0.7394 41 1 1.0792 3.9726 0.5077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:05 Heat of formation + Delta-G solvation = -68.853813 kcal Electronic energy + Delta-G solvation = -19179.414955 eV Core-core repulsion = 16479.322404 eV Total energy + Delta-G solvation = -2700.092551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30945 -36.81834 -34.26488 -33.19584 -31.98683 -30.99853 -27.08195 -26.30642 -24.31370 -23.78916 -22.52094 -20.46623 -19.58827 -18.76364 -17.18950 -16.60761 -15.76697 -14.76903 -14.37482 -14.04672 -13.79638 -13.78165 -13.04893 -12.82191 -12.50343 -12.42633 -12.18075 -12.01407 -11.90156 -11.21783 -11.05976 -10.94932 -10.76806 -10.63103 -10.51448 -10.24966 -10.18849 -10.01872 -9.89500 -9.68801 -9.59085 -9.45623 -8.84301 -8.38521 -7.01081 -6.35345 -4.12965 3.40632 3.42543 3.56050 4.45833 4.49151 4.86483 4.93812 5.13690 5.32932 5.46944 5.55527 5.61479 5.78995 5.92117 6.03610 6.08275 6.12948 6.18505 6.25781 6.30629 6.33137 6.33900 6.38334 6.45678 6.61321 6.64962 6.75388 6.77480 6.85809 6.89344 6.91994 7.14094 7.34926 7.40216 7.84863 7.99857 8.13754 8.44133 8.54448 8.81398 9.61068 10.98208 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.008327 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.209956 B = 3361.777646 C = 3873.043819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.198 3.802 4 H 0.040 0.960 5 C -0.621 4.621 6 H 0.051 0.949 7 C 0.027 3.973 8 N -0.909 5.909 9 Si 1.064 2.936 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.540 5.540 14 C 0.074 3.926 15 C -0.118 4.118 16 C -0.137 4.137 17 C 0.118 3.882 18 H 0.065 0.935 19 O -0.570 6.570 20 C -0.085 4.085 21 H 0.063 0.937 22 C -0.131 4.131 23 C 0.075 3.925 24 H 0.028 0.972 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.272 0.728 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.368 0.632 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 2.726 10.814 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.092 3.908 4 H 0.058 0.942 5 C -0.660 4.660 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.544 5.544 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.264 5.264 14 C -0.056 4.056 15 C -0.156 4.156 16 C -0.175 4.175 17 C 0.060 3.940 18 H 0.083 0.917 19 O -0.375 6.375 20 C -0.103 4.103 21 H 0.082 0.918 22 C -0.188 4.188 23 C -0.053 4.053 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.214 0.786 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.196 3.142 9.443 10.800 hybrid contribution -0.657 -0.482 1.286 1.522 sum -4.853 2.660 10.728 12.072 Atomic orbital electron populations 1.21743 0.98135 0.98851 1.01147 1.21695 0.93087 0.99458 1.00237 1.19457 0.93974 0.90340 0.87038 0.94234 1.22578 0.92298 1.56201 0.94931 0.93097 1.25700 1.06337 0.93552 0.92316 1.70722 1.08477 1.44494 1.30744 0.83626 0.74986 0.76974 0.75125 1.21691 1.21299 1.21478 1.61179 1.58403 1.02067 1.04765 1.21577 0.93505 0.99840 0.90644 1.20526 1.01454 0.96169 0.97455 1.21214 1.01208 0.96795 0.98301 1.21538 0.96082 0.85788 0.90637 0.91721 1.86546 1.55398 1.38031 1.57509 1.20983 0.97289 0.95923 0.96152 0.91810 1.21559 1.00897 0.95056 1.01329 1.22200 1.00878 0.88362 0.93847 0.95249 0.92641 0.94116 0.92885 0.93662 0.91633 0.90905 0.95183 0.91604 0.93130 0.92903 0.92425 0.78623 0.92085 0.93428 0.93025 0.93307 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.80 37.16 0.36 -2.29 16 2 C -0.11 -2.33 5.17 -26.73 -0.14 -2.47 16 3 C 0.20 4.69 1.29 -68.87 -0.09 4.60 16 4 H 0.04 1.05 6.88 -51.93 -0.36 0.69 16 5 C -0.62 -16.40 6.81 -34.44 -0.23 -16.64 16 6 H 0.05 1.37 6.67 -52.48 -0.35 1.02 16 7 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 8 N -0.91 -26.52 13.55 55.43 0.75 -25.77 16 9 Si 1.06 24.94 29.91 -169.99 -5.08 19.85 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.54 -10.95 3.40 -228.04 -0.77 -11.72 16 14 C 0.07 1.40 3.72 -4.70 -0.02 1.38 16 15 C -0.12 -1.81 5.37 -29.59 -0.16 -1.96 16 16 C -0.14 -1.91 5.00 -29.30 -0.15 -2.05 16 17 C 0.12 1.74 2.96 -27.16 -0.08 1.66 16 18 H 0.06 1.03 7.80 -51.93 -0.40 0.62 16 19 O -0.57 -7.59 11.43 -35.23 -0.40 -7.99 16 20 C -0.08 -1.40 2.14 -91.37 -0.20 -1.59 16 21 H 0.06 1.10 6.65 -51.93 -0.35 0.76 16 22 C -0.13 -1.99 8.32 37.16 0.31 -1.68 16 23 C 0.08 1.47 4.66 -2.76 -0.01 1.46 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.01 7.76 -51.93 -0.40 0.61 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.27 7.77 -51.93 -0.40 0.87 16 28 H 0.04 0.97 6.28 -51.93 -0.33 0.64 16 29 H 0.27 7.90 6.43 -40.82 -0.26 7.63 16 30 H 0.07 1.51 5.41 -51.93 -0.28 1.23 16 31 H 0.03 0.60 6.71 -51.93 -0.35 0.25 16 32 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.06 0.83 7.58 -51.93 -0.39 0.44 16 36 H 0.37 3.34 9.06 45.56 0.41 3.76 16 37 H 0.06 0.90 7.23 -51.93 -0.38 0.53 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.09 7.25 -51.93 -0.38 0.71 16 41 H 0.06 1.12 7.98 -51.93 -0.41 0.70 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -28.28 304.64 -7.80 -36.07 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.38 Total: 3.91 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.50 Total: -18.95 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.02 Total: -37.49 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.40 Total: -7.99 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.28 -7.80 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.780 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds