Wall clock time and date at job start Sun Mar 29 2020 23:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46975 * 2 1 4 4 H 1.08997 * 109.47271 * 305.23970 * 3 2 1 5 5 C 1.50699 * 109.47100 * 185.23967 * 3 2 1 6 6 H 1.08003 * 120.00229 * 268.30550 * 5 3 2 7 7 C 1.37880 * 119.99982 * 88.30242 * 5 3 2 8 8 N 1.31511 * 119.99997 * 353.33361 * 7 5 3 9 9 Si 1.86798 * 119.99935 * 173.32485 * 7 5 3 10 10 H 1.48499 * 109.47445 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47362 * 240.00407 * 9 7 5 12 12 H 1.48499 * 109.46814 * 120.00185 * 9 7 5 13 13 N 1.46901 * 109.47177 * 65.24328 * 3 2 1 14 14 C 1.44292 * 111.00349 * 66.04417 * 13 3 2 15 15 C 1.53986 * 108.31970 * 221.35074 * 14 13 3 16 16 C 1.45873 * 112.66380 * 278.60203 * 15 14 13 17 17 C 1.54523 * 111.67521 * 61.49658 * 16 15 14 18 18 H 1.08998 * 109.56985 * 42.69721 * 17 16 15 19 19 O 1.42897 * 109.57419 * 162.94604 * 17 16 15 20 20 C 1.50536 * 108.86333 * 282.75986 * 17 16 15 21 21 H 1.09004 * 108.79013 * 330.97417 * 20 17 16 22 22 C 1.52998 * 108.79165 * 212.63878 * 20 17 16 23 23 C 1.47950 * 110.99674 * 193.46391 * 13 3 2 24 24 H 1.09001 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46962 * 299.99484 * 1 2 3 26 26 H 1.08995 * 109.47032 * 60.00102 * 1 2 3 27 27 H 1.08997 * 109.46811 * 239.99984 * 2 1 3 28 28 H 1.09002 * 109.46743 * 120.00178 * 2 1 3 29 29 H 0.96999 * 119.99969 * 354.53463 * 8 7 5 30 30 H 1.09001 * 109.69690 * 341.06082 * 14 13 3 31 31 H 1.09005 * 109.70092 * 101.64544 * 14 13 3 32 32 H 1.09003 * 108.84236 * 39.42235 * 15 14 13 33 33 H 1.08995 * 108.84593 * 157.77842 * 15 14 13 34 34 H 1.08998 * 109.04232 * 182.06214 * 16 15 14 35 35 H 1.09002 * 109.03997 * 301.00572 * 16 15 14 36 36 H 0.96705 * 114.00173 * 299.99951 * 19 17 16 37 37 H 1.09004 * 109.46831 * 59.99843 * 22 20 17 38 38 H 1.08999 * 109.47319 * 179.97438 * 22 20 17 39 39 H 1.08997 * 109.47462 * 300.00527 * 22 20 17 40 40 H 1.08998 * 108.71418 * 313.17162 * 23 13 3 41 41 H 1.09000 * 108.71212 * 71.19436 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6021 1.9826 -0.8393 5 6 3.5414 1.4445 -0.1298 6 1 4.1600 1.4444 0.7556 7 6 4.1254 1.4463 -1.3787 8 7 3.3794 1.3142 -2.4537 9 14 5.9763 1.6369 -1.5440 10 1 6.5830 1.7670 -0.1949 11 1 6.2795 2.8514 -2.3428 12 1 6.5378 0.4431 -2.2258 13 7 1.6564 2.0974 1.2577 14 6 2.3314 1.4947 2.3816 15 6 1.3246 1.3679 3.5397 16 6 1.1648 2.6120 4.2844 17 6 0.6217 3.7477 3.3883 18 1 -0.1749 3.3618 2.7523 19 8 0.1119 4.8017 4.2076 20 6 1.7442 4.2718 2.5330 21 1 2.6851 4.1349 3.0661 22 6 1.5261 5.7674 2.2958 23 6 1.8415 3.5627 1.1703 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.4299 1.1361 -2.3662 30 1 2.6977 0.5065 2.1033 31 1 3.1671 2.1236 2.6887 32 1 0.3566 1.0735 3.1340 33 1 1.6689 0.5908 4.2221 34 1 0.4708 2.4466 5.1084 35 1 2.1318 2.9111 4.6888 36 1 -0.6092 4.5315 4.7926 37 1 1.5160 6.2894 3.2527 38 1 2.3338 6.1588 1.6773 39 1 0.5732 5.9198 1.7889 40 1 2.8218 3.7662 0.7394 41 1 1.0792 3.9726 0.5077 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:05 Heat of formation + Delta-G solvation = -87.293203 kcal Electronic energy + Delta-G solvation = -19180.214547 eV Core-core repulsion = 16479.322404 eV Total energy + Delta-G solvation = -2700.892143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73161 -38.29614 -35.76574 -34.53090 -33.87077 -32.57095 -28.46091 -28.13066 -25.78094 -25.52964 -24.17007 -21.82532 -21.22662 -20.33390 -18.65087 -18.24046 -17.37833 -16.11857 -15.92742 -15.71124 -15.50244 -15.22049 -14.56996 -14.22269 -14.11591 -14.01284 -13.55206 -13.48070 -13.31565 -12.90231 -12.70052 -12.49304 -12.42313 -12.15387 -12.03898 -12.02473 -11.72740 -11.53406 -11.37260 -11.33909 -11.10170 -10.85599 -10.57832 -10.48456 -8.86688 -8.48020 -6.32243 1.47231 1.54387 1.69852 2.52562 3.12391 3.27940 3.40381 3.73605 3.92939 4.14565 4.20889 4.25940 4.38838 4.45848 4.53072 4.61399 4.69824 4.73021 4.82609 4.87599 4.91694 4.94688 5.02056 5.06219 5.18227 5.20150 5.27734 5.28542 5.39430 5.41970 5.44502 5.47689 5.54888 5.65720 6.01400 6.07298 6.56998 6.61494 6.73883 7.01003 7.48538 8.77991 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.008327 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.209956 B = 3361.777646 C = 3873.043819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 C 0.202 3.798 4 H 0.006 0.994 5 C -0.620 4.620 6 H 0.042 0.958 7 C -0.024 4.024 8 N -0.936 5.936 9 Si 1.105 2.895 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.529 5.529 14 C 0.073 3.927 15 C -0.106 4.106 16 C -0.134 4.134 17 C 0.127 3.873 18 H 0.056 0.944 19 O -0.574 6.574 20 C -0.080 4.080 21 H 0.056 0.944 22 C -0.124 4.124 23 C 0.080 3.920 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.390 0.610 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.012 0.988 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 2.777 13.103 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C 0.094 3.906 4 H 0.024 0.976 5 C -0.659 4.659 6 H 0.060 0.940 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.929 3.071 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.252 5.252 14 C -0.056 4.056 15 C -0.144 4.144 16 C -0.171 4.171 17 C 0.068 3.932 18 H 0.074 0.926 19 O -0.382 6.382 20 C -0.099 4.099 21 H 0.074 0.926 22 C -0.182 4.182 23 C -0.048 4.048 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.239 0.761 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.982 3.190 11.768 13.172 hybrid contribution -0.444 -0.468 0.623 0.897 sum -5.426 2.722 12.391 13.798 Atomic orbital electron populations 1.21613 0.95292 1.00511 1.01248 1.21518 0.95564 0.97638 0.99016 1.19293 0.92305 0.91348 0.87624 0.97626 1.22838 0.93932 1.54746 0.94360 0.93982 1.26922 1.09732 0.93264 0.92418 1.70826 1.08099 1.46929 1.31439 0.83072 0.70955 0.77241 0.75805 1.20315 1.20861 1.20697 1.61230 1.57976 1.02291 1.03710 1.21639 0.94419 0.98139 0.91383 1.20410 1.00028 0.97817 0.96163 1.21170 1.01880 0.95357 0.98722 1.21274 0.94931 0.86247 0.90760 0.92570 1.86492 1.56476 1.37513 1.57758 1.20887 0.98129 0.96445 0.94427 0.92554 1.21510 1.00863 0.94051 1.01793 1.22165 0.98495 0.88252 0.95916 0.92786 0.91619 0.94859 0.95741 0.93126 0.92830 0.92855 0.96516 0.91451 0.91121 0.89545 0.92809 0.76074 0.91090 0.93750 0.92846 0.96939 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.80 71.98 0.71 -4.02 16 2 C -0.10 -4.39 5.17 30.59 0.16 -4.23 16 3 C 0.20 9.84 1.29 44.17 0.06 9.89 16 4 H 0.01 0.32 6.88 -2.39 -0.02 0.30 16 5 C -0.62 -33.71 6.81 25.60 0.17 -33.54 16 6 H 0.04 2.32 6.67 -2.91 -0.02 2.30 16 7 C -0.02 -1.33 5.45 84.66 0.46 -0.87 16 8 N -0.94 -56.43 13.55 21.45 0.29 -56.14 16 9 Si 1.11 50.96 29.91 68.60 2.05 53.01 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.53 -21.57 3.40 -875.39 -2.97 -24.54 16 14 C 0.07 2.73 3.72 87.12 0.32 3.06 16 15 C -0.11 -2.95 5.37 28.74 0.15 -2.80 16 16 C -0.13 -3.24 5.00 28.93 0.14 -3.10 16 17 C 0.13 3.41 2.96 30.31 0.09 3.50 16 18 H 0.06 1.64 7.80 -2.39 -0.02 1.62 16 19 O -0.57 -13.25 11.43 -148.98 -1.70 -14.95 16 20 C -0.08 -2.57 2.14 -11.28 -0.02 -2.60 16 21 H 0.06 1.90 6.65 -2.38 -0.02 1.89 16 22 C -0.12 -3.63 8.32 71.98 0.60 -3.04 16 23 C 0.08 3.19 4.66 86.41 0.40 3.59 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 2.26 7.76 -2.39 -0.02 2.24 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.02 1.20 7.77 -2.39 -0.02 1.18 16 28 H 0.05 2.16 6.28 -2.39 -0.01 2.15 16 29 H 0.26 15.88 6.43 -92.71 -0.60 15.28 16 30 H 0.05 2.19 5.41 -2.39 -0.01 2.18 16 31 H 0.02 0.66 6.71 -2.38 -0.02 0.64 16 32 H 0.07 1.90 8.08 -2.39 -0.02 1.88 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.59 8.10 -2.39 -0.02 1.57 16 35 H 0.05 1.38 7.58 -2.39 -0.02 1.36 16 36 H 0.39 5.39 9.06 -74.05 -0.67 4.72 16 37 H 0.07 1.95 7.23 -2.38 -0.02 1.93 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.01 0.58 7.25 -2.39 -0.02 0.56 16 41 H 0.05 2.03 7.98 -2.39 -0.02 2.01 16 Total: -1.00 -62.29 304.64 1.41 -60.88 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.49 Total: 15.89 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 3.25 Total: -34.15 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.68 Total: -80.68 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.70 Total: -14.95 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.01 kcal Total: -62.29 1.41 -60.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.414 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds