Wall clock time and date at job start Sun Mar 29 2020 23:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 H 1.08998 * 109.47357 * 182.93340 * 3 2 1 5 5 C 1.50702 * 109.46710 * 62.93073 * 3 2 1 6 6 H 1.08001 * 120.00103 * 244.08253 * 5 3 2 7 7 C 1.37881 * 119.99855 * 64.09066 * 5 3 2 8 8 N 1.31509 * 119.99801 * 194.66584 * 7 5 3 9 9 Si 1.86801 * 120.00071 * 14.66712 * 7 5 3 10 10 H 1.48492 * 109.47248 * 91.95012 * 9 7 5 11 11 H 1.48496 * 109.46862 * 211.95135 * 9 7 5 12 12 H 1.48504 * 109.46865 * 331.95082 * 9 7 5 13 13 N 1.46901 * 109.47136 * 302.93651 * 3 2 1 14 14 C 1.39783 * 111.00132 * 302.82591 * 13 3 2 15 15 C 1.54432 * 111.76371 * 170.86474 * 14 13 3 16 16 C 1.50748 * 109.03201 * 77.38867 * 15 14 13 17 17 C 1.54168 * 112.61484 * 266.98961 * 16 15 14 18 18 H 1.08996 * 108.97972 * 280.87584 * 17 16 15 19 19 O 1.42897 * 108.98147 * 162.16051 * 17 16 15 20 20 C 1.53810 * 111.97162 * 41.51715 * 17 16 15 21 21 H 1.09003 * 109.05336 * 280.48028 * 20 17 16 22 22 C 1.53005 * 109.05240 * 161.50643 * 20 17 16 23 23 C 1.47628 * 110.99735 * 173.92389 * 13 3 2 24 24 H 1.08997 * 109.46791 * 295.04803 * 1 2 3 25 25 H 1.08993 * 109.47670 * 55.05313 * 1 2 3 26 26 H 1.09002 * 109.46891 * 175.05339 * 1 2 3 27 27 H 1.08999 * 109.46943 * 240.00529 * 2 1 3 28 28 H 1.08993 * 109.47469 * 120.00290 * 2 1 3 29 29 H 0.97000 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.01376 * 50.27672 * 14 13 3 31 31 H 1.08997 * 109.02412 * 291.45813 * 14 13 3 32 32 H 1.08998 * 109.54382 * 317.51872 * 15 14 13 33 33 H 1.09002 * 109.54308 * 197.25760 * 15 14 13 34 34 H 1.09004 * 108.85152 * 146.17754 * 16 15 14 35 35 H 1.09005 * 108.77022 * 27.74281 * 16 15 14 36 36 H 0.96696 * 114.00280 * 57.53390 * 19 17 16 37 37 H 1.09005 * 109.46651 * 60.00178 * 22 20 17 38 38 H 1.09000 * 109.46918 * 300.00198 * 22 20 17 39 39 H 1.08997 * 109.47328 * 179.97438 * 22 20 17 40 40 H 1.09001 * 109.75157 * 90.04800 * 23 13 3 41 41 H 1.08994 * 109.75265 * 329.31308 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4430 -0.0526 5 6 1.5978 2.1316 1.2652 6 1 0.9200 2.9709 1.2145 7 6 2.0587 1.6905 2.4876 8 7 1.4681 2.0853 3.5943 9 14 3.5218 0.5323 2.5716 10 1 4.7713 1.3225 2.7114 11 1 3.3728 -0.3693 3.7421 12 1 3.5845 -0.2770 1.3281 13 7 1.4933 2.1552 -1.1624 14 6 1.8313 1.5054 -2.3529 15 6 1.0833 2.1038 -3.5642 16 6 1.7442 3.4000 -3.9588 17 6 1.0930 4.6257 -3.2877 18 1 0.1781 4.8788 -3.8234 19 8 1.9950 5.7313 -3.3641 20 6 0.7513 4.3599 -1.8118 21 1 -0.1749 3.7876 -1.7584 22 6 0.5532 5.6977 -1.0962 23 6 1.8458 3.5881 -1.1182 24 1 -0.3633 0.4351 0.9310 25 1 -0.3634 0.5886 -0.8423 26 1 -0.3633 -1.0239 -0.0886 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7921 1.7748 4.4543 30 1 1.5778 0.4489 -2.2652 31 1 2.9049 1.5993 -2.5165 32 1 0.0440 2.2916 -3.2946 33 1 1.1239 1.4047 -4.3996 34 1 1.6779 3.5140 -5.0408 35 1 2.7953 3.3589 -3.6731 36 1 2.2591 5.9619 -4.2653 37 1 -0.2622 6.2453 -1.5690 38 1 1.4700 6.2837 -1.1610 39 1 0.3101 5.5173 -0.0491 40 1 2.7932 3.7503 -1.6322 41 1 1.9275 3.9155 -0.0819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:11 Heat of formation + Delta-G solvation = -47.452624 kcal Electronic energy + Delta-G solvation = -19266.386689 eV Core-core repulsion = 16567.222163 eV Total energy + Delta-G solvation = -2699.164526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.48238 -36.94634 -34.21949 -32.97797 -32.01457 -30.91192 -27.71142 -26.39720 -24.88840 -23.27965 -22.56474 -20.85184 -19.15655 -18.71941 -17.02854 -16.40038 -15.80147 -15.14081 -14.73195 -13.92417 -13.77606 -13.54626 -13.06672 -12.85688 -12.76964 -12.56288 -12.33040 -12.13493 -11.56232 -11.26011 -11.14405 -11.05561 -10.91922 -10.51550 -10.40590 -10.21127 -10.12718 -10.04179 -9.78158 -9.68795 -9.51202 -9.23625 -8.88262 -8.39652 -7.13091 -6.05631 -3.97900 3.29154 3.38638 3.41587 4.44855 4.48761 4.77412 4.99062 5.07212 5.25284 5.27353 5.44020 5.57362 5.77346 5.92830 5.99531 6.01359 6.10738 6.17407 6.20762 6.29435 6.32415 6.34968 6.39035 6.51529 6.57356 6.65683 6.78129 6.83724 6.84822 6.98097 7.13909 7.19152 7.29162 7.51814 7.75667 7.82297 8.12494 8.34778 8.79974 9.05313 9.60595 11.06895 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.008531 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.964739 B = 3281.420117 C = 3721.091426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.195 3.805 4 H -0.010 1.010 5 C -0.502 4.502 6 H 0.083 0.917 7 C 0.076 3.924 8 N -0.892 5.892 9 Si 0.857 3.143 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.541 5.541 14 C 0.072 3.928 15 C -0.115 4.115 16 C -0.150 4.150 17 C 0.111 3.889 18 H 0.043 0.957 19 O -0.563 6.563 20 C -0.077 4.077 21 H 0.089 0.911 22 C -0.136 4.136 23 C 0.075 3.925 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.027 0.973 28 H 0.054 0.946 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.003 0.997 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.366 0.634 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 1.799 -13.995 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.156 4.156 3 C 0.088 3.912 4 H 0.007 0.993 5 C -0.540 4.540 6 H 0.101 0.899 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.265 5.265 14 C -0.058 4.058 15 C -0.153 4.153 16 C -0.188 4.188 17 C 0.052 3.948 18 H 0.061 0.939 19 O -0.367 6.367 20 C -0.096 4.096 21 H 0.107 0.893 22 C -0.194 4.194 23 C -0.052 4.052 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.021 0.979 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.212 0.788 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.936 1.734 -13.116 13.263 hybrid contribution 1.796 -0.701 -0.587 2.016 sum 0.860 1.033 -13.702 13.768 Atomic orbital electron populations 1.21477 0.95671 0.97856 1.03210 1.21976 0.97108 0.97922 0.98612 1.19561 0.91653 0.90752 0.89239 0.99297 1.20873 1.28597 1.16622 0.87888 0.89905 1.24843 0.96345 0.95746 0.95706 1.69956 1.39349 1.45856 0.97822 0.87326 0.84318 0.81748 0.78124 1.20923 1.21453 1.17921 1.58658 1.63547 1.02196 1.02067 1.21003 0.95469 0.98945 0.90423 1.21413 1.00910 0.95455 0.97485 1.22151 1.01427 0.96083 0.99111 1.22370 0.90359 0.84708 0.97317 0.93862 1.86613 1.67006 1.51197 1.31909 1.21065 1.00656 0.96740 0.91101 0.89319 1.21681 1.01109 0.96510 1.00091 1.21826 0.94307 0.86923 1.02162 0.91570 0.92620 0.96235 0.95402 0.92782 0.92807 0.91065 0.97946 0.90812 0.92251 0.93001 0.91493 0.78848 0.94002 0.92248 0.92297 0.95689 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.42 37.16 0.35 -2.21 16 2 C -0.12 -2.57 4.44 -26.73 -0.12 -2.68 16 3 C 0.19 4.52 1.36 -68.86 -0.09 4.42 16 4 H -0.01 -0.26 6.87 -51.93 -0.36 -0.61 16 5 C -0.50 -13.44 6.81 -34.44 -0.23 -13.68 16 6 H 0.08 2.42 7.04 -52.49 -0.37 2.05 16 7 C 0.08 2.12 5.35 -17.82 -0.10 2.02 16 8 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.86 21.10 25.79 -169.99 -4.38 16.71 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.25 -5.95 5.37 56.52 0.30 -5.65 16 13 N -0.54 -10.84 2.91 -233.38 -0.68 -11.52 16 14 C 0.07 1.24 4.53 -6.74 -0.03 1.21 16 15 C -0.11 -1.60 5.65 -27.11 -0.15 -1.75 16 16 C -0.15 -1.96 4.91 -27.25 -0.13 -2.09 16 17 C 0.11 1.54 3.15 -25.70 -0.08 1.46 16 18 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 19 O -0.56 -7.62 11.84 -35.23 -0.42 -8.04 16 20 C -0.08 -1.28 2.16 -91.29 -0.20 -1.47 16 21 H 0.09 1.55 7.26 -51.93 -0.38 1.17 16 22 C -0.14 -2.22 8.53 37.16 0.32 -1.90 16 23 C 0.07 1.46 4.57 -4.52 -0.02 1.44 16 24 H 0.07 1.53 7.48 -51.93 -0.39 1.15 16 25 H 0.05 1.10 7.19 -51.93 -0.37 0.72 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.03 0.54 6.34 -51.93 -0.33 0.22 16 28 H 0.05 1.24 4.74 -51.93 -0.25 1.00 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.07 1.23 5.55 -51.93 -0.29 0.95 16 31 H 0.00 0.05 7.54 -51.93 -0.39 -0.34 16 32 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.98 6.56 -51.93 -0.34 0.64 16 36 H 0.37 3.30 9.05 45.56 0.41 3.71 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.99 7.29 -51.93 -0.38 0.61 16 39 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.02 0.49 6.66 -51.93 -0.35 0.15 16 41 H 0.10 2.28 5.31 -51.93 -0.28 2.01 16 LS Contribution 294.02 15.07 4.43 4.43 Total: -1.00 -29.03 294.02 -6.95 -35.98 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.18 Total: 3.47 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.49 Total: -15.25 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.09 Total: -37.31 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.42 Total: -8.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.38 Total: 16.71 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.03 -6.95 -35.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.472 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds