Wall clock time and date at job start Sun Mar 29 2020 23:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 H 1.08998 * 109.47357 * 182.93340 * 3 2 1 5 5 C 1.50702 * 109.46710 * 62.93073 * 3 2 1 6 6 H 1.08001 * 120.00103 * 244.08253 * 5 3 2 7 7 C 1.37881 * 119.99855 * 64.09066 * 5 3 2 8 8 N 1.31509 * 119.99801 * 194.66584 * 7 5 3 9 9 Si 1.86801 * 120.00071 * 14.66712 * 7 5 3 10 10 H 1.48492 * 109.47248 * 91.95012 * 9 7 5 11 11 H 1.48496 * 109.46862 * 211.95135 * 9 7 5 12 12 H 1.48504 * 109.46865 * 331.95082 * 9 7 5 13 13 N 1.46901 * 109.47136 * 302.93651 * 3 2 1 14 14 C 1.39783 * 111.00132 * 302.82591 * 13 3 2 15 15 C 1.54432 * 111.76371 * 170.86474 * 14 13 3 16 16 C 1.50748 * 109.03201 * 77.38867 * 15 14 13 17 17 C 1.54168 * 112.61484 * 266.98961 * 16 15 14 18 18 H 1.08996 * 108.97972 * 280.87584 * 17 16 15 19 19 O 1.42897 * 108.98147 * 162.16051 * 17 16 15 20 20 C 1.53810 * 111.97162 * 41.51715 * 17 16 15 21 21 H 1.09003 * 109.05336 * 280.48028 * 20 17 16 22 22 C 1.53005 * 109.05240 * 161.50643 * 20 17 16 23 23 C 1.47628 * 110.99735 * 173.92389 * 13 3 2 24 24 H 1.08997 * 109.46791 * 295.04803 * 1 2 3 25 25 H 1.08993 * 109.47670 * 55.05313 * 1 2 3 26 26 H 1.09002 * 109.46891 * 175.05339 * 1 2 3 27 27 H 1.08999 * 109.46943 * 240.00529 * 2 1 3 28 28 H 1.08993 * 109.47469 * 120.00290 * 2 1 3 29 29 H 0.97000 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.01376 * 50.27672 * 14 13 3 31 31 H 1.08997 * 109.02412 * 291.45813 * 14 13 3 32 32 H 1.08998 * 109.54382 * 317.51872 * 15 14 13 33 33 H 1.09002 * 109.54308 * 197.25760 * 15 14 13 34 34 H 1.09004 * 108.85152 * 146.17754 * 16 15 14 35 35 H 1.09005 * 108.77022 * 27.74281 * 16 15 14 36 36 H 0.96696 * 114.00280 * 57.53390 * 19 17 16 37 37 H 1.09005 * 109.46651 * 60.00178 * 22 20 17 38 38 H 1.09000 * 109.46918 * 300.00198 * 22 20 17 39 39 H 1.08997 * 109.47328 * 179.97438 * 22 20 17 40 40 H 1.09001 * 109.75157 * 90.04800 * 23 13 3 41 41 H 1.08994 * 109.75265 * 329.31308 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4430 -0.0526 5 6 1.5978 2.1316 1.2652 6 1 0.9200 2.9709 1.2145 7 6 2.0587 1.6905 2.4876 8 7 1.4681 2.0853 3.5943 9 14 3.5218 0.5323 2.5716 10 1 4.7713 1.3225 2.7114 11 1 3.3728 -0.3693 3.7421 12 1 3.5845 -0.2770 1.3281 13 7 1.4933 2.1552 -1.1624 14 6 1.8313 1.5054 -2.3529 15 6 1.0833 2.1038 -3.5642 16 6 1.7442 3.4000 -3.9588 17 6 1.0930 4.6257 -3.2877 18 1 0.1781 4.8788 -3.8234 19 8 1.9950 5.7313 -3.3641 20 6 0.7513 4.3599 -1.8118 21 1 -0.1749 3.7876 -1.7584 22 6 0.5532 5.6977 -1.0962 23 6 1.8458 3.5881 -1.1182 24 1 -0.3633 0.4351 0.9310 25 1 -0.3634 0.5886 -0.8423 26 1 -0.3633 -1.0239 -0.0886 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7921 1.7748 4.4543 30 1 1.5778 0.4489 -2.2652 31 1 2.9049 1.5993 -2.5165 32 1 0.0440 2.2916 -3.2946 33 1 1.1239 1.4047 -4.3996 34 1 1.6779 3.5140 -5.0408 35 1 2.7953 3.3589 -3.6731 36 1 2.2591 5.9619 -4.2653 37 1 -0.2622 6.2453 -1.5690 38 1 1.4700 6.2837 -1.1610 39 1 0.3101 5.5173 -0.0491 40 1 2.7932 3.7503 -1.6322 41 1 1.9275 3.9155 -0.0819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:11 Heat of formation + Delta-G solvation = -67.979012 kcal Electronic energy + Delta-G solvation = -19267.276780 eV Core-core repulsion = 16567.222163 eV Total energy + Delta-G solvation = -2700.054617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88324 -38.30601 -35.71192 -34.39153 -33.83279 -32.48634 -29.34634 -27.99939 -26.36944 -24.72261 -24.26232 -22.26199 -20.79173 -20.05082 -18.54627 -18.02047 -17.45488 -16.48583 -16.35523 -15.49638 -15.26933 -15.15430 -14.67618 -14.31195 -14.18523 -13.95627 -13.94005 -13.62294 -13.01040 -12.86481 -12.81918 -12.44391 -12.38806 -12.30488 -12.04493 -11.87816 -11.75141 -11.43952 -11.28606 -11.10574 -11.01060 -10.78276 -10.62359 -10.48404 -8.77146 -8.24023 -6.18776 1.30756 1.36015 1.43561 2.36675 3.09365 3.26313 3.52792 3.85691 3.89453 4.13311 4.20708 4.26197 4.42259 4.52987 4.60036 4.63860 4.66319 4.71175 4.77267 4.82897 4.95925 5.04462 5.06673 5.10326 5.18186 5.22129 5.31096 5.33697 5.35868 5.44354 5.48339 5.54022 5.67096 5.75702 5.84228 6.19821 6.54231 6.84809 7.02426 7.06963 7.42645 8.92188 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.008531 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.964739 B = 3281.420117 C = 3721.091426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C 0.195 3.805 4 H -0.024 1.024 5 C -0.490 4.490 6 H 0.043 0.957 7 C 0.021 3.979 8 N -0.940 5.940 9 Si 0.914 3.086 10 H -0.285 1.285 11 H -0.287 1.287 12 H -0.231 1.231 13 N -0.541 5.541 14 C 0.064 3.936 15 C -0.107 4.107 16 C -0.145 4.145 17 C 0.118 3.882 18 H 0.067 0.933 19 O -0.580 6.580 20 C -0.076 4.076 21 H 0.081 0.919 22 C -0.130 4.130 23 C 0.083 3.917 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.075 0.925 31 H -0.003 1.003 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.388 0.612 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 0.753 -17.279 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.156 4.156 3 C 0.088 3.912 4 H -0.006 1.006 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.213 1.213 12 H -0.154 1.154 13 N -0.265 5.265 14 C -0.065 4.065 15 C -0.145 4.145 16 C -0.183 4.183 17 C 0.059 3.941 18 H 0.085 0.915 19 O -0.388 6.388 20 C -0.095 4.095 21 H 0.099 0.901 22 C -0.187 4.187 23 C -0.044 4.044 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.725 0.690 -16.449 16.480 hybrid contribution 1.702 -0.282 0.401 1.771 sum 0.976 0.408 -16.048 16.082 Atomic orbital electron populations 1.21352 0.94847 0.99515 1.01457 1.21924 0.97824 0.96486 0.99370 1.19446 0.90873 0.91940 0.88968 1.00645 1.21015 1.26838 1.15176 0.89748 0.93861 1.25574 0.98881 0.97861 0.95380 1.70089 1.41321 1.48241 0.98445 0.86400 0.80566 0.80049 0.79040 1.21160 1.21318 1.15377 1.58690 1.63263 1.02134 1.02366 1.21183 0.95766 0.99202 0.90389 1.21381 1.00096 0.96418 0.96565 1.22109 0.99999 0.95065 1.01121 1.22221 0.91618 0.85477 0.94775 0.91525 1.86562 1.67033 1.50981 1.34180 1.20987 0.98995 0.95969 0.93520 0.90095 1.21598 1.01583 0.96784 0.98770 1.21673 0.95521 0.87308 0.99911 0.95301 0.91909 0.93245 0.92378 0.94092 0.92897 0.90658 0.98504 0.91043 0.89327 0.89475 0.93150 0.76282 0.91752 0.92804 0.94938 0.96041 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.55 9.42 71.98 0.68 -3.87 16 2 C -0.12 -4.94 4.44 30.60 0.14 -4.80 16 3 C 0.20 9.08 1.36 44.17 0.06 9.14 16 4 H -0.02 -1.16 6.87 -2.39 -0.02 -1.18 16 5 C -0.49 -27.32 6.81 25.60 0.17 -27.15 16 6 H 0.04 2.71 7.04 -2.91 -0.02 2.69 16 7 C 0.02 1.19 5.35 84.66 0.45 1.64 16 8 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 9 Si 0.91 44.16 25.79 68.60 1.77 45.93 16 10 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 12 H -0.23 -10.17 5.37 99.48 0.53 -9.63 16 13 N -0.54 -21.47 2.91 -892.28 -2.60 -24.07 16 14 C 0.06 2.07 4.53 88.07 0.40 2.47 16 15 C -0.11 -2.58 5.65 30.35 0.17 -2.41 16 16 C -0.15 -3.24 4.91 30.26 0.15 -3.09 16 17 C 0.12 2.91 3.15 31.26 0.10 3.01 16 18 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 19 O -0.58 -14.16 11.84 -148.98 -1.76 -15.93 16 20 C -0.08 -2.48 2.16 -11.23 -0.02 -2.51 16 21 H 0.08 2.78 7.26 -2.39 -0.02 2.76 16 22 C -0.13 -4.28 8.53 71.98 0.61 -3.66 16 23 C 0.08 3.31 4.57 85.46 0.39 3.70 16 24 H 0.03 1.33 7.48 -2.39 -0.02 1.31 16 25 H 0.06 2.37 7.19 -2.39 -0.02 2.36 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 2.09 6.34 -2.39 -0.02 2.08 16 28 H 0.04 1.81 4.74 -2.39 -0.01 1.80 16 29 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.08 2.36 5.55 -2.39 -0.01 2.34 16 31 H 0.00 -0.10 7.54 -2.39 -0.02 -0.12 16 32 H 0.07 1.80 7.11 -2.39 -0.02 1.79 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.05 1.32 6.56 -2.38 -0.02 1.30 16 36 H 0.39 5.62 9.05 -74.06 -0.67 4.95 16 37 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.05 1.81 7.29 -2.39 -0.02 1.79 16 39 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 40 H 0.02 0.86 6.66 -2.39 -0.02 0.84 16 41 H 0.06 2.80 5.31 -2.39 -0.01 2.78 16 Total: -1.00 -65.58 294.02 1.17 -64.41 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.17 Total: 15.42 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.30 Total: -27.53 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.30 Total: -82.30 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.76 Total: -15.93 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.77 Total: 45.93 kcal Total: -65.58 1.17 -64.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.572 kcal (2) G-P(sol) polarization free energy of solvation -65.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds