Wall clock time and date at job start Sun Mar 29 2020 22:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46733 * 2 1 4 4 C 1.52999 * 109.46733 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46913 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99846 * 180.02562 * 5 4 3 7 7 C 1.53515 * 114.17139 * 149.99874 * 6 5 4 8 8 N 1.47486 * 87.93048 * 87.62429 * 7 6 5 9 9 C 1.46898 * 110.99952 * 138.70741 * 8 7 6 10 10 H 1.09001 * 109.46757 * 299.99962 * 9 8 7 11 11 C 1.50701 * 109.47389 * 59.99812 * 9 8 7 12 12 H 1.08001 * 119.99525 * 0.02562 * 11 9 8 13 13 C 1.37875 * 119.99860 * 180.02562 * 11 9 8 14 14 N 1.31505 * 120.00324 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99863 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46957 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47343 * 119.99805 * 15 13 11 18 18 H 1.48500 * 109.47059 * 240.00152 * 15 13 11 19 19 C 1.53001 * 109.47026 * 179.97438 * 9 8 7 20 20 C 1.53005 * 109.47201 * 64.99727 * 19 9 8 21 21 C 1.47480 * 87.83684 * 27.00978 * 8 7 6 22 22 H 1.09009 * 109.46996 * 299.99426 * 1 2 3 23 23 H 1.08994 * 109.47576 * 59.99974 * 1 2 3 24 24 H 1.09005 * 109.47182 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47129 * 240.00555 * 2 1 3 26 26 H 1.08994 * 109.47576 * 120.00026 * 2 1 3 27 27 H 1.08999 * 109.46860 * 60.00391 * 3 2 1 28 28 H 1.08994 * 109.47112 * 300.00311 * 3 2 1 29 29 H 1.08999 * 109.47129 * 60.00555 * 4 3 2 30 30 H 1.09003 * 109.47482 * 300.00315 * 4 3 2 31 31 H 1.09000 * 113.38831 * 16.92453 * 6 5 4 32 32 H 1.09005 * 113.47774 * 332.85878 * 7 6 5 33 33 H 1.08997 * 113.53532 * 202.40034 * 7 6 5 34 34 H 0.97001 * 120.00628 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46952 * 184.99556 * 19 9 8 36 36 H 1.08992 * 109.47030 * 304.99983 * 19 9 8 37 37 H 1.08997 * 109.46898 * 300.00513 * 20 19 9 38 38 H 1.09003 * 109.46496 * 59.99997 * 20 19 9 39 39 H 1.08990 * 109.47070 * 179.97438 * 20 19 9 40 40 H 1.09005 * 113.47310 * 87.75367 * 21 8 7 41 41 H 1.08990 * 113.48150 * 218.22188 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.4707 2.9027 -0.0012 7 6 6.0010 4.1620 -0.7010 8 7 5.8682 4.8686 0.5868 9 6 7.0200 5.7485 0.8256 10 1 7.9334 5.1539 0.8457 11 6 7.1097 6.7698 -0.2790 12 1 6.3833 6.7658 -1.0782 13 6 8.1189 7.7091 -0.2691 14 7 9.0030 7.7141 0.7044 15 14 8.2296 8.9754 -1.6379 16 1 7.1238 8.7572 -2.6048 17 1 8.1210 10.3392 -1.0606 18 1 9.5324 8.8361 -2.3370 19 6 6.8463 6.4631 2.1673 20 6 6.8800 5.4356 3.3005 21 6 6.0496 3.5670 1.2560 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6765 1.9564 -0.8899 29 1 3.9328 0.9290 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 5.9774 1.9830 -0.2935 32 1 5.3344 4.5417 -1.4754 33 1 7.0324 4.0693 -1.0411 34 1 9.7129 8.3752 0.7116 35 1 7.6550 7.1811 2.3039 36 1 5.8901 6.9860 2.1793 37 1 6.0715 4.7174 3.1639 38 1 7.8363 4.9126 3.2884 39 1 6.7567 5.9446 4.2563 40 1 7.0942 3.3145 1.4386 41 1 5.4244 3.4423 2.1400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:19 Heat of formation + Delta-G solvation = -25.359374 kcal Electronic energy + Delta-G solvation = -17809.190727 eV Core-core repulsion = 15110.984236 eV Total energy + Delta-G solvation = -2698.206491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62224 -37.06176 -34.89462 -33.56515 -31.45318 -29.24601 -28.03046 -25.46477 -24.68294 -23.35658 -22.67515 -21.21462 -19.59895 -19.18395 -16.63416 -16.11795 -15.97147 -15.52822 -14.51375 -14.44453 -14.09871 -13.69724 -13.39909 -13.17309 -12.58474 -12.42384 -12.22931 -11.91387 -11.68583 -11.52626 -11.29510 -11.22179 -10.94116 -10.89648 -10.78505 -10.72907 -10.58896 -10.29577 -9.92536 -9.58224 -9.32887 -8.93911 -8.70234 -8.42712 -7.63257 -6.00329 -4.05667 3.30139 3.38172 3.43470 3.76827 4.42653 4.78959 4.85992 4.95089 4.98088 5.15464 5.24706 5.30770 5.41851 5.46493 5.51684 5.66879 5.70758 5.74465 5.90954 5.99960 6.13489 6.15051 6.21716 6.27122 6.27683 6.40271 6.45187 6.56352 6.62496 6.84858 7.05545 7.16219 7.50683 7.56527 7.64511 7.84358 8.12652 8.35685 8.52230 9.01638 9.59416 11.05642 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.004702 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.799268 B = 5954.053174 C = 6454.425724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.119 4.119 4 C 0.060 3.940 5 O -0.351 6.351 6 C 0.048 3.952 7 C 0.019 3.981 8 N -0.454 5.454 9 C 0.183 3.817 10 H 0.006 0.994 11 C -0.506 4.506 12 H 0.061 0.939 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.108 4.108 20 C -0.154 4.154 21 C -0.018 4.018 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.260 0.740 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -13.852 -0.319 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.269 6.269 6 C -0.010 4.010 7 C -0.110 4.110 8 N -0.177 5.177 9 C 0.076 3.924 10 H 0.024 0.976 11 C -0.545 4.545 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.147 4.147 20 C -0.211 4.211 21 C -0.147 4.147 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.973 -13.124 -0.106 16.484 hybrid contribution 1.221 0.167 -0.739 1.438 sum -8.752 -12.957 -0.846 15.658 Atomic orbital electron populations 1.21755 0.95578 1.01475 1.02082 1.21441 0.96095 0.96355 1.02023 1.21537 0.93837 0.96808 1.03482 1.22537 0.94853 0.84791 0.99566 1.87980 1.19747 1.24750 1.94438 1.23429 0.81454 0.97539 0.98609 1.23758 0.99830 0.91376 0.96084 1.68989 1.40377 1.05997 1.02360 1.19847 0.86291 0.91826 0.94486 0.97613 1.21185 1.11583 1.13878 1.07804 0.92037 1.24933 0.95568 0.97599 0.96050 1.69892 1.15610 1.35880 1.31680 0.86483 0.77778 0.81355 0.82081 1.19719 1.20996 1.21154 1.21496 1.01770 0.98252 0.93166 1.22037 1.00071 1.00239 0.98763 1.24359 0.99249 0.93495 0.97632 0.92595 0.92614 0.92814 0.91991 0.91959 0.91077 0.91154 0.93817 0.93787 0.91440 0.90425 0.90638 0.93041 0.88858 0.94182 0.93332 0.94377 0.95018 0.91661 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.31 5.58 -26.73 -0.15 -1.46 16 4 C 0.06 0.75 5.78 37.16 0.21 0.96 16 5 O -0.35 -5.97 10.39 -35.23 -0.37 -6.34 16 6 C 0.05 0.82 4.65 -26.20 -0.12 0.70 16 7 C 0.02 0.38 6.47 -7.53 -0.05 0.33 16 8 N -0.45 -10.28 6.10 -237.99 -1.45 -11.73 16 9 C 0.18 4.67 1.37 -68.86 -0.09 4.58 16 10 H 0.01 0.17 7.52 -51.93 -0.39 -0.22 16 11 C -0.51 -14.10 8.08 -34.44 -0.28 -14.38 16 12 H 0.06 1.74 7.43 -52.49 -0.39 1.35 16 13 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 14 N -0.89 -25.52 11.29 55.43 0.63 -24.89 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.11 -2.70 5.45 -26.73 -0.15 -2.85 16 20 C -0.15 -3.21 9.14 37.16 0.34 -2.87 16 21 C -0.02 -0.33 5.40 -7.54 -0.04 -0.37 16 22 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 32 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.08 1.53 7.89 -51.93 -0.41 1.12 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.09 2.56 5.95 -51.93 -0.31 2.25 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.96 5.10 -51.93 -0.26 0.69 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.21 7.54 -51.93 -0.39 0.82 16 41 H 0.08 1.42 6.80 -51.93 -0.35 1.07 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -29.45 321.96 -9.12 -38.57 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.55 Total: -1.22 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -0.21 Total: -15.78 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.83 Total: -36.62 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.37 Total: -6.34 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.45 -9.12 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.207 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds