Wall clock time and date at job start Sun Mar 29 2020 22:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46733 * 2 1 4 4 C 1.52999 * 109.46733 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46913 * 180.02562 * 4 3 2 6 6 C 1.42900 * 113.99846 * 180.02562 * 5 4 3 7 7 C 1.53515 * 114.17139 * 149.99874 * 6 5 4 8 8 N 1.47486 * 87.93048 * 87.62429 * 7 6 5 9 9 C 1.46898 * 110.99952 * 138.70741 * 8 7 6 10 10 H 1.09001 * 109.46757 * 299.99962 * 9 8 7 11 11 C 1.50701 * 109.47389 * 59.99812 * 9 8 7 12 12 H 1.08001 * 119.99525 * 0.02562 * 11 9 8 13 13 C 1.37875 * 119.99860 * 180.02562 * 11 9 8 14 14 N 1.31505 * 120.00324 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99863 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46957 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47343 * 119.99805 * 15 13 11 18 18 H 1.48500 * 109.47059 * 240.00152 * 15 13 11 19 19 C 1.53001 * 109.47026 * 179.97438 * 9 8 7 20 20 C 1.53005 * 109.47201 * 64.99727 * 19 9 8 21 21 C 1.47480 * 87.83684 * 27.00978 * 8 7 6 22 22 H 1.09009 * 109.46996 * 299.99426 * 1 2 3 23 23 H 1.08994 * 109.47576 * 59.99974 * 1 2 3 24 24 H 1.09005 * 109.47182 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47129 * 240.00555 * 2 1 3 26 26 H 1.08994 * 109.47576 * 120.00026 * 2 1 3 27 27 H 1.08999 * 109.46860 * 60.00391 * 3 2 1 28 28 H 1.08994 * 109.47112 * 300.00311 * 3 2 1 29 29 H 1.08999 * 109.47129 * 60.00555 * 4 3 2 30 30 H 1.09003 * 109.47482 * 300.00315 * 4 3 2 31 31 H 1.09000 * 113.38831 * 16.92453 * 6 5 4 32 32 H 1.09005 * 113.47774 * 332.85878 * 7 6 5 33 33 H 1.08997 * 113.53532 * 202.40034 * 7 6 5 34 34 H 0.97001 * 120.00628 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.46952 * 184.99556 * 19 9 8 36 36 H 1.08992 * 109.47030 * 304.99983 * 19 9 8 37 37 H 1.08997 * 109.46898 * 300.00513 * 20 19 9 38 38 H 1.09003 * 109.46496 * 59.99997 * 20 19 9 39 39 H 1.08990 * 109.47070 * 179.97438 * 20 19 9 40 40 H 1.09005 * 113.47310 * 87.75367 * 21 8 7 41 41 H 1.08990 * 113.48150 * 218.22188 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.4707 2.9027 -0.0012 7 6 6.0010 4.1620 -0.7010 8 7 5.8682 4.8686 0.5868 9 6 7.0200 5.7485 0.8256 10 1 7.9334 5.1539 0.8457 11 6 7.1097 6.7698 -0.2790 12 1 6.3833 6.7658 -1.0782 13 6 8.1189 7.7091 -0.2691 14 7 9.0030 7.7141 0.7044 15 14 8.2296 8.9754 -1.6379 16 1 7.1238 8.7572 -2.6048 17 1 8.1210 10.3392 -1.0606 18 1 9.5324 8.8361 -2.3370 19 6 6.8463 6.4631 2.1673 20 6 6.8800 5.4356 3.3005 21 6 6.0496 3.5670 1.2560 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6765 1.9564 -0.8899 29 1 3.9328 0.9290 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 5.9774 1.9830 -0.2935 32 1 5.3344 4.5417 -1.4754 33 1 7.0324 4.0693 -1.0411 34 1 9.7129 8.3752 0.7116 35 1 7.6550 7.1811 2.3039 36 1 5.8901 6.9860 2.1793 37 1 6.0715 4.7174 3.1639 38 1 7.8363 4.9126 3.2884 39 1 6.7567 5.9446 4.2563 40 1 7.0942 3.3145 1.4386 41 1 5.4244 3.4423 2.1400 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:19 Heat of formation + Delta-G solvation = -44.508603 kcal Electronic energy + Delta-G solvation = -17810.021100 eV Core-core repulsion = 15110.984236 eV Total energy + Delta-G solvation = -2699.036864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.18346 -38.32649 -36.07356 -35.18744 -33.42392 -30.37923 -29.59156 -27.17768 -26.39096 -24.58106 -24.15976 -22.05296 -21.45348 -20.66655 -18.55470 -17.58100 -17.30042 -16.89782 -16.29679 -15.59548 -15.33256 -15.22968 -14.94812 -14.40278 -14.01593 -13.91556 -13.52522 -13.35598 -13.24749 -12.98315 -12.80040 -12.68758 -12.60144 -12.31503 -12.06244 -11.93320 -11.81804 -11.65969 -11.52396 -11.43843 -11.04351 -10.72409 -10.51451 -10.27241 -9.41861 -8.13134 -6.25797 1.38009 1.40323 1.52164 2.40351 2.59133 3.13526 3.49608 3.57647 4.03792 4.04858 4.14322 4.23907 4.40301 4.46457 4.51391 4.57878 4.61566 4.62266 4.69110 4.74895 4.82793 4.87445 4.93435 4.96743 5.00851 5.07739 5.12227 5.23445 5.28300 5.32227 5.38869 5.48316 5.56700 5.59650 5.72003 6.13454 6.31685 6.42607 6.59571 6.88654 7.43095 8.91839 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.004702 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.799268 B = 5954.053174 C = 6454.425724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.117 4.117 4 C 0.053 3.947 5 O -0.377 6.377 6 C 0.074 3.926 7 C 0.012 3.988 8 N -0.478 5.478 9 C 0.191 3.809 10 H -0.020 1.020 11 C -0.526 4.526 12 H 0.049 0.951 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 0.958 3.042 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.277 1.277 19 C -0.106 4.106 20 C -0.141 4.141 21 C -0.016 4.016 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.262 0.738 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 -15.402 -0.476 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.154 4.154 4 C -0.023 4.023 5 O -0.296 6.296 6 C 0.015 3.985 7 C -0.118 4.118 8 N -0.201 5.201 9 C 0.083 3.917 10 H -0.002 1.002 11 C -0.564 4.564 12 H 0.067 0.933 13 C -0.185 4.185 14 N -0.555 5.555 15 Si 0.783 3.217 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.203 1.203 19 C -0.144 4.144 20 C -0.198 4.198 21 C -0.145 4.145 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.627 -14.691 -0.262 18.134 hybrid contribution 1.366 0.616 -0.693 1.651 sum -9.260 -14.075 -0.956 16.875 Atomic orbital electron populations 1.21766 0.95054 1.02273 1.01888 1.21417 0.96520 0.94610 1.02837 1.21547 0.92950 0.98387 1.02562 1.22819 0.95629 0.82894 1.00979 1.87954 1.19451 1.27784 1.94376 1.23179 0.82004 0.97396 0.95897 1.23773 0.99571 0.93300 0.95148 1.68921 1.38879 1.07785 1.04472 1.19625 0.86368 0.91617 0.94107 1.00219 1.21429 1.11572 1.14995 1.08401 0.93274 1.25675 0.95225 0.99342 0.98220 1.70005 1.15957 1.36529 1.32983 0.85513 0.77917 0.78880 0.79366 1.19592 1.20563 1.20264 1.21357 0.99587 0.98700 0.94780 1.21890 1.00661 0.99405 0.97879 1.24370 0.99814 0.91651 0.98674 0.92867 0.92810 0.91520 0.91105 0.91178 0.92123 0.92022 0.92191 0.92415 0.87793 0.91554 0.91288 0.92867 0.91711 0.95710 0.92023 0.94212 0.93168 0.91286 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.70 5.93 30.60 0.18 -1.52 16 3 C -0.12 -2.36 5.58 30.60 0.17 -2.19 16 4 C 0.05 1.19 5.78 71.98 0.42 1.61 16 5 O -0.38 -12.15 10.39 -148.98 -1.55 -13.70 16 6 C 0.07 2.37 4.65 30.94 0.14 2.51 16 7 C 0.01 0.46 6.47 83.58 0.54 1.00 16 8 N -0.48 -21.69 6.10 -907.24 -5.53 -27.22 16 9 C 0.19 9.95 1.37 44.17 0.06 10.01 16 10 H -0.02 -1.11 7.52 -2.39 -0.02 -1.12 16 11 C -0.53 -29.99 8.08 25.60 0.21 -29.78 16 12 H 0.05 2.85 7.43 -2.91 -0.02 2.83 16 13 C 0.01 0.81 5.29 84.66 0.45 1.26 16 14 N -0.92 -53.25 11.29 21.45 0.24 -53.01 16 15 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 C -0.11 -5.36 5.45 30.60 0.17 -5.19 16 20 C -0.14 -5.76 9.14 71.98 0.66 -5.10 16 21 C -0.02 -0.57 5.40 83.58 0.45 -0.12 16 22 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 2.61 7.88 -2.39 -0.02 2.59 16 32 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.07 2.84 7.89 -2.39 -0.02 2.82 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.06 3.65 5.95 -2.39 -0.01 3.63 16 36 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 2.34 5.10 -2.39 -0.01 2.33 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.47 7.54 -2.38 -0.02 2.45 16 41 H 0.08 2.93 6.80 -2.39 -0.02 2.92 16 Total: -1.00 -63.68 321.96 0.30 -63.38 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.96 Total: 12.67 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 4.16 Total: -28.84 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -5.29 Total: -80.23 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -1.55 Total: -13.70 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.68 0.30 -63.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.872 kcal (2) G-P(sol) polarization free energy of solvation -63.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds