Wall clock time and date at job start Sun Mar 29 2020 22:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.53003 * 109.47017 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.42901 * 113.99933 * 179.97438 * 5 4 3 7 7 C 1.53513 * 114.17196 * 150.00238 * 6 5 4 8 8 N 1.47479 * 87.93264 * 87.62063 * 7 6 5 9 9 C 1.46901 * 110.99780 * 138.70142 * 8 7 6 10 10 H 1.09000 * 109.47639 * 317.23976 * 9 8 7 11 11 C 1.50696 * 109.47266 * 197.23713 * 9 8 7 12 12 H 1.07998 * 119.99899 * 354.55003 * 11 9 8 13 13 C 1.37883 * 120.00257 * 174.55228 * 11 9 8 14 14 N 1.31512 * 119.99651 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00297 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46842 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47376 * 119.99329 * 15 13 11 18 18 H 1.48494 * 109.47061 * 240.00054 * 15 13 11 19 19 C 1.53003 * 109.46777 * 77.23888 * 9 8 7 20 20 C 1.52998 * 109.47081 * 294.99706 * 19 9 8 21 21 C 1.47479 * 87.83780 * 27.01204 * 8 7 6 22 22 H 1.08993 * 109.47466 * 300.00239 * 1 2 3 23 23 H 1.09007 * 109.47166 * 60.00518 * 1 2 3 24 24 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47092 * 239.99645 * 2 1 3 26 26 H 1.08995 * 109.46783 * 119.99680 * 2 1 3 27 27 H 1.08993 * 109.47198 * 59.99597 * 3 2 1 28 28 H 1.09007 * 109.46729 * 299.99749 * 3 2 1 29 29 H 1.08999 * 109.47092 * 59.99645 * 4 3 2 30 30 H 1.08995 * 109.46783 * 299.99680 * 4 3 2 31 31 H 1.08997 * 113.38041 * 16.92146 * 6 5 4 32 32 H 1.09001 * 113.47220 * 332.85843 * 7 6 5 33 33 H 1.08993 * 113.53296 * 202.39803 * 7 6 5 34 34 H 0.97001 * 119.99857 * 180.02562 * 14 13 11 35 35 H 1.09007 * 109.47118 * 175.00010 * 19 9 8 36 36 H 1.08997 * 109.47242 * 55.00223 * 19 9 8 37 37 H 1.08997 * 109.47504 * 300.00357 * 20 19 9 38 38 H 1.08993 * 109.47091 * 60.00207 * 20 19 9 39 39 H 1.08998 * 109.46866 * 180.02562 * 20 19 9 40 40 H 1.09002 * 113.47819 * 87.74684 * 21 8 7 41 41 H 1.08994 * 113.48031 * 218.22051 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9026 0.0012 7 6 6.0023 4.1609 -0.6995 8 7 5.8673 4.8694 0.5869 9 6 7.0188 5.7495 0.8264 10 1 7.9366 5.2304 0.5504 11 6 7.0716 6.1216 2.2858 12 1 6.2771 5.8155 2.9502 13 6 8.1343 6.8529 2.7728 14 7 9.1019 7.2252 1.9638 15 14 8.2001 7.3136 4.5819 16 1 6.9997 6.7780 5.2730 17 1 9.4234 6.7370 5.1953 18 1 8.2291 8.7922 4.7154 19 6 6.8761 7.0172 -0.0183 20 6 6.9477 6.6519 -1.5023 21 6 6.0476 3.5687 1.2583 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8901 29 1 3.9337 0.9285 -0.8891 30 1 3.9329 0.9289 0.8909 31 1 5.9779 1.9824 -0.2889 32 1 5.3370 4.5394 -1.4756 33 1 7.0342 4.0676 -1.0377 34 1 9.8497 7.7394 2.3064 35 1 7.6829 7.7087 0.2250 36 1 5.9168 7.4891 0.1939 37 1 7.9070 6.1800 -1.7145 38 1 6.1410 5.9605 -1.7456 39 1 6.8465 7.5551 -2.1040 40 1 7.0918 3.3164 1.4430 41 1 5.4209 3.4453 2.1415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:21 Heat of formation + Delta-G solvation = -42.977402 kcal Electronic energy + Delta-G solvation = -17809.691360 eV Core-core repulsion = 15110.720895 eV Total energy + Delta-G solvation = -2698.970466 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.21356 -38.33885 -36.05237 -35.16447 -33.47617 -30.42634 -29.60974 -27.14064 -26.42180 -24.59367 -24.15142 -22.05648 -21.49162 -20.66493 -18.56374 -17.60348 -17.30908 -16.91666 -16.31160 -15.66442 -15.30544 -15.19694 -14.90746 -14.39429 -14.02188 -13.84818 -13.60046 -13.34875 -13.27715 -13.01646 -12.78350 -12.71222 -12.61490 -12.30651 -12.07302 -11.92902 -11.79731 -11.74545 -11.53904 -11.43893 -10.95819 -10.72268 -10.52128 -10.29160 -9.42111 -8.15393 -6.26097 1.37163 1.39337 1.51379 2.40020 2.58462 3.13582 3.52435 3.54446 4.02396 4.04927 4.13774 4.23610 4.38714 4.45936 4.50255 4.57133 4.60573 4.61050 4.71030 4.74493 4.81811 4.85095 4.93327 4.96519 5.00911 5.08012 5.12871 5.21596 5.28167 5.30986 5.38770 5.48140 5.54431 5.56940 5.71017 6.08812 6.28276 6.42132 6.59810 6.89041 7.42819 8.91676 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.004877 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.017319 B = 5740.069610 C = 6384.410115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.116 4.116 4 C 0.053 3.947 5 O -0.376 6.376 6 C 0.073 3.927 7 C -0.001 4.001 8 N -0.478 5.478 9 C 0.190 3.810 10 H -0.017 1.017 11 C -0.523 4.523 12 H 0.046 0.954 13 C 0.014 3.986 14 N -0.917 5.917 15 Si 0.957 3.043 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.279 1.279 19 C -0.102 4.102 20 C -0.149 4.149 21 C -0.004 4.004 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.262 0.738 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -13.809 -6.027 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.154 4.154 4 C -0.023 4.023 5 O -0.295 6.295 6 C 0.015 3.985 7 C -0.130 4.130 8 N -0.201 5.201 9 C 0.083 3.917 10 H 0.000 1.000 11 C -0.562 4.562 12 H 0.064 0.936 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.782 3.218 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.205 1.205 19 C -0.141 4.141 20 C -0.206 4.206 21 C -0.134 4.134 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.864 -13.096 -5.875 18.001 hybrid contribution 1.397 0.193 1.023 1.742 sum -9.466 -12.904 -4.853 16.723 Atomic orbital electron populations 1.21765 0.95015 1.02272 1.01907 1.21420 0.96554 0.94650 1.02804 1.21544 0.92893 0.98369 1.02592 1.22814 0.95672 0.82936 1.00909 1.87942 1.19441 1.27730 1.94346 1.23202 0.82009 0.97800 0.95539 1.24193 1.00052 0.93368 0.95385 1.68924 1.38958 1.08173 1.04045 1.19617 0.86502 0.91066 0.94549 0.99974 1.21365 1.05942 1.34292 0.94553 0.93562 1.25681 0.95146 0.95783 1.01883 1.70043 1.10655 1.38706 1.36241 0.85524 0.77935 0.77957 0.80337 1.19664 1.20233 1.20480 1.21315 0.99253 0.99297 0.94193 1.22049 1.01107 1.01286 0.96162 1.24010 0.99396 0.91473 0.98505 0.93017 0.92606 0.91540 0.90891 0.91474 0.92441 0.91601 0.91789 0.92980 0.87755 0.89273 0.90685 0.92878 0.92863 0.95299 0.94117 0.91169 0.93047 0.91884 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.35 16 2 C -0.12 -1.74 5.93 30.59 0.18 -1.56 16 3 C -0.12 -2.37 5.58 30.59 0.17 -2.20 16 4 C 0.05 1.21 5.78 71.98 0.42 1.62 16 5 O -0.38 -12.07 10.39 -148.98 -1.55 -13.61 16 6 C 0.07 2.33 4.65 30.94 0.14 2.48 16 7 C 0.00 -0.04 5.16 83.58 0.43 0.39 16 8 N -0.48 -21.68 6.12 -907.32 -5.55 -27.23 16 9 C 0.19 9.94 1.24 44.17 0.05 10.00 16 10 H -0.02 -0.98 7.56 -2.39 -0.02 -0.99 16 11 C -0.52 -30.08 8.10 25.60 0.21 -29.87 16 12 H 0.05 2.73 7.78 -2.91 -0.02 2.71 16 13 C 0.01 0.80 5.30 84.66 0.45 1.25 16 14 N -0.92 -53.68 11.72 21.45 0.25 -53.42 16 15 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 C -0.10 -5.11 5.49 30.59 0.17 -4.94 16 20 C -0.15 -5.95 8.84 71.98 0.64 -5.31 16 21 C 0.00 -0.17 6.90 83.58 0.58 0.41 16 22 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 31 H 0.10 2.60 7.88 -2.39 -0.02 2.58 16 32 H 0.09 3.07 6.73 -2.39 -0.02 3.05 16 33 H 0.08 2.64 7.27 -2.39 -0.02 2.63 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.05 2.97 6.42 -2.38 -0.02 2.95 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 2.57 4.59 -2.39 -0.01 2.56 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 2.60 7.82 -2.39 -0.02 2.58 16 41 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -64.29 322.18 0.29 -64.01 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.96 Total: 12.38 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.15 Total: -29.08 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -5.30 Total: -80.66 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.55 Total: -13.61 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.29 0.29 -64.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.029 kcal (2) G-P(sol) polarization free energy of solvation -64.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds