Wall clock time and date at job start Sun Mar 29 2020 23:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47308 * 2 1 4 4 H 1.08997 * 109.47080 * 327.14563 * 3 2 1 5 5 C 1.50702 * 109.47052 * 207.14698 * 3 2 1 6 6 H 1.08002 * 120.00163 * 242.89185 * 5 3 2 7 7 C 1.37875 * 120.00041 * 62.88944 * 5 3 2 8 8 N 1.31520 * 120.00099 * 196.27022 * 7 5 3 9 9 Si 1.86803 * 120.00006 * 16.00245 * 7 5 3 10 10 H 1.48491 * 109.47150 * 88.66829 * 9 7 5 11 11 H 1.48497 * 109.46913 * 208.66889 * 9 7 5 12 12 H 1.48500 * 109.46792 * 328.66265 * 9 7 5 13 13 N 1.46899 * 109.46821 * 87.14939 * 3 2 1 14 14 C 1.47008 * 111.00297 * 61.47536 * 13 3 2 15 15 C 1.53095 * 109.25592 * 177.60720 * 14 13 3 16 16 O 1.43020 * 109.26085 * 56.84807 * 15 14 13 17 17 C 1.43013 * 113.73534 * 301.32843 * 16 15 14 18 18 C 1.47016 * 110.99892 * 297.83406 * 13 3 2 19 19 H 1.09003 * 109.50113 * 62.46021 * 18 13 3 20 20 C 1.52997 * 109.50820 * 302.33340 * 18 13 3 21 21 C 1.53008 * 109.47008 * 179.97438 * 20 18 13 22 22 C 1.52995 * 109.47437 * 299.99606 * 20 18 13 23 23 H 1.08999 * 109.47381 * 185.26269 * 1 2 3 24 24 H 1.09005 * 109.47079 * 305.26115 * 1 2 3 25 25 H 1.09001 * 109.47524 * 65.25588 * 1 2 3 26 26 H 1.09009 * 109.47042 * 240.00021 * 2 1 3 27 27 H 1.08998 * 109.47373 * 120.00266 * 2 1 3 28 28 H 0.96993 * 119.99874 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.50788 * 297.54214 * 14 13 3 30 30 H 1.09002 * 109.50837 * 57.67472 * 14 13 3 31 31 H 1.09004 * 109.50644 * 176.78415 * 15 14 13 32 32 H 1.08997 * 109.50941 * 296.86551 * 15 14 13 33 33 H 1.09004 * 109.49967 * 178.60445 * 17 16 15 34 34 H 1.08999 * 109.50611 * 298.73324 * 17 16 15 35 35 H 1.08999 * 109.47353 * 60.00376 * 20 18 13 36 36 H 1.08995 * 109.46927 * 60.00167 * 21 20 18 37 37 H 1.08999 * 109.46600 * 179.97438 * 21 20 18 38 38 H 1.08998 * 109.46954 * 299.99876 * 21 20 18 39 39 H 1.08999 * 109.47036 * 300.00997 * 22 20 18 40 40 H 1.09003 * 109.46663 * 59.99926 * 22 20 18 41 41 H 1.08998 * 109.47769 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3472 2.0728 -0.5575 5 6 3.3994 1.4946 -0.6483 6 1 4.2595 1.8076 -0.0749 7 6 3.5452 1.1427 -1.9734 8 7 4.7396 0.8769 -2.4556 9 14 2.0455 1.0360 -3.0819 10 1 1.7851 2.3646 -3.6917 11 1 2.2926 0.0390 -4.1543 12 1 0.8666 0.6192 -2.2808 13 7 2.1382 1.9271 1.3833 14 6 3.0927 1.1204 2.1576 15 6 3.2087 1.6951 3.5719 16 8 1.9125 1.7277 4.1756 17 6 0.9580 2.5052 3.4479 18 6 0.8192 1.9388 2.0323 19 1 0.4298 0.9220 2.0837 20 6 -0.1404 2.8141 1.2236 21 6 -1.5130 2.8252 1.8995 22 6 0.4063 4.2414 1.1548 23 1 -0.3634 -1.0233 0.0943 24 1 -0.3633 0.5933 0.8392 25 1 -0.3634 0.4301 -0.9333 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 4.8422 0.6297 -3.3879 29 1 2.7397 0.0906 2.2109 30 1 4.0687 1.1467 1.6729 31 1 3.8716 1.0667 4.1668 32 1 3.6132 2.7059 3.5220 33 1 -0.0069 2.4628 3.9532 34 1 1.2964 3.5400 3.3943 35 1 -0.2359 2.4125 0.2148 36 1 -1.4179 3.2266 2.9084 37 1 -2.1965 3.4492 1.3236 38 1 -1.9023 1.8083 1.9482 39 1 0.5018 4.6429 2.1637 40 1 1.3840 4.2331 0.6731 41 1 -0.2775 4.8651 0.5791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:57 Heat of formation + Delta-G solvation = -32.163307 kcal Electronic energy + Delta-G solvation = -19686.963537 eV Core-core repulsion = 16988.462006 eV Total energy + Delta-G solvation = -2698.501531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91399 -36.59061 -35.02220 -32.38797 -31.53697 -29.40423 -28.08484 -26.82423 -25.48440 -23.98052 -22.43116 -20.99595 -20.24588 -18.14223 -16.92850 -16.04472 -15.90717 -15.06813 -14.65374 -14.48197 -13.93527 -13.69148 -13.43262 -13.00617 -12.67075 -12.59609 -12.42492 -12.11771 -11.60507 -11.58761 -11.47317 -11.01108 -10.85406 -10.66320 -10.58885 -10.44836 -10.35900 -10.25080 -10.03704 -9.64030 -9.55246 -9.11885 -8.90109 -8.35645 -7.26529 -6.10860 -4.03791 3.28100 3.37394 3.39970 4.23688 4.42153 4.64049 5.10751 5.19917 5.20291 5.44061 5.51079 5.54696 5.66805 5.73554 5.79359 5.88897 5.90438 5.91853 5.99259 6.07808 6.10741 6.12220 6.19209 6.25746 6.42056 6.51199 6.56200 6.67297 6.69583 6.72873 6.83864 6.87068 7.01081 7.30916 7.53039 7.62064 7.93928 8.10573 8.63801 8.99185 9.55266 11.01390 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023870 B = 0.010447 C = 0.008709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.754357 B = 2679.567170 C = 3214.443077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.156 4.156 3 C 0.190 3.810 4 H 0.042 0.958 5 C -0.511 4.511 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.851 3.149 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.244 1.244 13 N -0.511 5.511 14 C 0.023 3.977 15 C 0.062 3.938 16 O -0.395 6.395 17 C 0.066 3.934 18 C 0.043 3.957 19 H 0.054 0.946 20 C -0.095 4.095 21 C -0.149 4.149 22 C -0.141 4.141 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.263 0.737 29 H 0.036 0.964 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 2.439 8.810 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.195 4.195 3 C 0.083 3.917 4 H 0.060 0.940 5 C -0.548 4.548 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.678 3.322 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.168 1.168 13 N -0.235 5.235 14 C -0.105 4.105 15 C -0.015 4.015 16 O -0.314 6.314 17 C -0.010 4.010 18 C -0.066 4.066 19 H 0.072 0.928 20 C -0.114 4.114 21 C -0.206 4.206 22 C -0.198 4.198 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.179 2.773 8.807 13.019 hybrid contribution -0.920 -0.903 -1.166 1.738 sum -10.099 1.871 7.641 12.801 Atomic orbital electron populations 1.22521 0.98429 1.00368 1.01880 1.22619 0.93405 1.02018 1.01496 1.19713 0.97728 0.89149 0.85150 0.94014 1.20907 0.92749 1.45334 0.95858 0.90291 1.24842 0.95379 0.94275 0.98047 1.69971 1.22601 1.45442 1.14971 0.87401 0.85703 0.78043 0.81075 1.20638 1.21742 1.16767 1.62426 1.05428 1.52635 1.03046 1.22716 0.99637 0.95093 0.93026 1.22743 0.84285 1.00742 0.93729 1.87887 1.21081 1.72550 1.49868 1.22814 0.92133 0.94818 0.91283 1.22460 0.91807 0.98281 0.94077 0.92835 1.21236 0.93401 0.96677 1.00068 1.21920 0.96874 1.01328 1.00524 1.21785 1.02215 0.94693 1.01078 0.94572 0.91449 0.92998 0.91982 0.93023 0.92741 0.94645 0.88222 0.89438 0.92819 0.89589 0.92434 0.90048 0.92726 0.92782 0.93002 0.93329 0.90507 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.12 37.15 0.30 -2.87 16 2 C -0.16 -3.31 4.07 -26.73 -0.11 -3.41 16 3 C 0.19 4.24 1.34 -68.86 -0.09 4.14 16 4 H 0.04 0.96 4.75 -51.93 -0.25 0.72 16 5 C -0.51 -13.65 8.40 -34.44 -0.29 -13.94 16 6 H 0.08 2.31 6.71 -52.49 -0.35 1.95 16 7 C 0.08 2.14 5.12 -17.82 -0.09 2.05 16 8 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.85 20.47 25.81 -169.99 -4.39 16.09 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.24 -5.40 3.89 56.52 0.22 -5.18 16 13 N -0.51 -10.08 3.78 -219.80 -0.83 -10.91 16 14 C 0.02 0.45 5.04 -3.72 -0.02 0.43 16 15 C 0.06 1.01 7.01 37.21 0.26 1.27 16 16 O -0.40 -6.66 10.83 -35.23 -0.38 -7.04 16 17 C 0.07 1.01 5.57 37.21 0.21 1.22 16 18 C 0.04 0.72 1.13 -67.60 -0.08 0.64 16 19 H 0.05 0.95 5.31 -51.93 -0.28 0.68 16 20 C -0.10 -1.45 1.40 -90.62 -0.13 -1.58 16 21 C -0.15 -1.81 8.78 37.16 0.33 -1.49 16 22 C -0.14 -2.11 8.69 37.16 0.32 -1.78 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.12 2.98 -51.93 -0.15 0.97 16 25 H 0.05 0.96 6.40 -51.93 -0.33 0.63 16 26 H 0.06 1.44 5.53 -51.92 -0.29 1.15 16 27 H 0.05 1.08 5.63 -51.93 -0.29 0.79 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.70 6.04 -51.93 -0.31 0.38 16 30 H 0.10 2.10 6.25 -51.93 -0.32 1.78 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.14 6.62 -51.93 -0.34 0.79 16 34 H 0.06 0.87 6.27 -51.93 -0.33 0.54 16 35 H 0.08 1.39 4.81 -51.93 -0.25 1.14 16 36 H 0.05 0.60 6.51 -51.93 -0.34 0.26 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.61 7.73 -51.93 -0.40 0.21 16 39 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 40 H 0.08 1.36 7.61 -51.93 -0.39 0.97 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -28.57 281.67 -6.36 -34.93 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.39 Total: 3.81 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 0.62 Total: -15.33 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.06 Total: -36.70 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.38 Total: -7.04 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.39 Total: 16.09 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.57 -6.36 -34.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.769 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds