Wall clock time and date at job start Sun Mar 29 2020 23:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 H 1.09003 * 109.46949 * 54.99687 * 3 2 1 5 5 C 1.50694 * 109.47174 * 175.00217 * 3 2 1 6 6 H 1.08000 * 120.00563 * 119.99919 * 5 3 2 7 7 C 1.37885 * 119.99902 * 300.00082 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46903 * 109.47120 * 295.00178 * 3 2 1 14 14 C 1.47009 * 110.99721 * 298.63658 * 13 3 2 15 15 C 1.53105 * 109.25797 * 177.60831 * 14 13 3 16 16 O 1.43014 * 109.25480 * 56.84304 * 15 14 13 17 17 C 1.43012 * 113.74673 * 301.33138 * 16 15 14 18 18 C 1.47004 * 110.99931 * 175.00023 * 13 3 2 19 19 H 1.09001 * 109.50972 * 62.41202 * 18 13 3 20 20 C 1.53002 * 109.50929 * 302.32455 * 18 13 3 21 21 C 1.52996 * 109.47215 * 179.97438 * 20 18 13 22 22 C 1.52996 * 109.47110 * 300.00447 * 20 18 13 23 23 H 1.09008 * 109.46826 * 300.00212 * 1 2 3 24 24 H 1.09001 * 109.47268 * 59.99832 * 1 2 3 25 25 H 1.08999 * 109.47792 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46533 * 239.99866 * 2 1 3 27 27 H 1.09002 * 109.46745 * 120.00186 * 2 1 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.50921 * 297.53900 * 14 13 3 30 30 H 1.09001 * 109.51481 * 57.67431 * 14 13 3 31 31 H 1.09000 * 109.50616 * 296.91284 * 15 14 13 32 32 H 1.08994 * 109.54290 * 176.80411 * 15 14 13 33 33 H 1.09001 * 109.50434 * 298.74417 * 17 16 15 34 34 H 1.08990 * 109.54872 * 178.62754 * 17 16 15 35 35 H 1.09001 * 109.46762 * 60.00044 * 20 18 13 36 36 H 1.09001 * 109.46990 * 60.00464 * 21 20 18 37 37 H 1.09006 * 109.47044 * 179.97438 * 21 20 18 38 38 H 1.08996 * 109.47824 * 299.99993 * 21 20 18 39 39 H 1.09001 * 109.46979 * 299.99464 * 22 20 18 40 40 H 1.08995 * 109.47568 * 59.99455 * 22 20 18 41 41 H 1.09006 * 109.47212 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3810 10 1 6.5538 -0.3523 0.7597 11 1 6.5576 2.0717 0.6887 12 1 6.3835 0.9212 2.8164 13 7 1.6514 2.0993 -1.2552 14 6 2.2472 1.4171 -2.4132 15 6 1.7696 2.0957 -3.6998 16 8 2.1100 3.4841 -3.6551 17 6 1.5458 4.1797 -2.5401 18 6 2.0211 3.5220 -1.2418 19 1 3.1041 3.6160 -1.1607 20 6 1.3578 4.2111 -0.0476 21 6 1.7437 5.6915 -0.0340 22 6 -0.1622 4.0806 -0.1632 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8293 -0.0612 2.9499 29 1 3.3338 1.4773 -2.3517 30 1 1.9397 0.3714 -2.4176 31 1 0.6885 1.9887 -3.7881 32 1 2.2528 1.6300 -4.5587 33 1 0.4582 4.1331 -2.5946 34 1 1.8670 5.2210 -2.5595 35 1 1.6936 3.7400 0.8762 36 1 1.4081 6.1629 -0.9578 37 1 1.2707 6.1825 0.8165 38 1 2.8265 5.7841 0.0486 39 1 -0.4980 4.5517 -1.0870 40 1 -0.4367 3.0259 -0.1727 41 1 -0.6348 4.5712 0.6878 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:01 Heat of formation + Delta-G solvation = -52.459068 kcal Electronic energy + Delta-G solvation = -19539.638653 eV Core-core repulsion = 16840.257031 eV Total energy + Delta-G solvation = -2699.381622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43446 -36.16376 -34.94894 -32.37560 -31.05044 -29.34306 -27.32840 -26.72591 -25.09261 -23.87177 -22.67028 -20.81478 -19.53594 -18.30602 -16.23640 -16.13301 -15.55174 -14.63741 -14.46535 -14.34804 -13.93797 -13.37799 -13.32606 -12.76111 -12.67651 -12.32393 -12.03644 -11.84557 -11.51564 -11.27182 -11.12093 -10.89331 -10.80455 -10.60289 -10.46284 -10.40851 -10.24243 -9.99921 -9.67424 -9.58805 -9.38747 -9.19137 -8.70101 -8.32928 -7.13485 -5.99712 -4.12482 3.25627 3.33233 3.36711 4.35868 4.39153 4.90043 5.24047 5.40429 5.45953 5.62574 5.70503 5.72359 5.84479 5.89958 5.98578 6.05492 6.12839 6.26272 6.31106 6.32364 6.39039 6.43768 6.47810 6.60162 6.66064 6.74834 6.86563 6.95594 7.00024 7.09200 7.17218 7.32358 7.61222 7.65324 7.74688 7.96294 8.14660 8.30271 8.45153 8.97142 9.54885 10.99178 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.009761 C = 0.009450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.568888 B = 2867.937621 C = 2962.150178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.212 3.788 4 H 0.048 0.952 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.524 5.524 14 C 0.023 3.977 15 C 0.063 3.937 16 O -0.395 6.395 17 C 0.065 3.935 18 C 0.064 3.936 19 H 0.052 0.948 20 C -0.088 4.088 21 C -0.146 4.146 22 C -0.137 4.137 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 5.011 -5.893 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C 0.106 3.894 4 H 0.065 0.935 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.249 5.249 14 C -0.106 4.106 15 C -0.014 4.014 16 O -0.314 6.314 17 C -0.012 4.012 18 C -0.045 4.045 19 H 0.070 0.930 20 C -0.107 4.107 21 C -0.204 4.204 22 C -0.194 4.194 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.534 4.973 -5.889 9.489 hybrid contribution 1.915 -0.223 0.510 1.995 sum -3.619 4.750 -5.379 8.037 Atomic orbital electron populations 1.21718 0.98885 0.98408 1.00513 1.21639 0.92212 0.99378 1.01956 1.19349 0.93024 0.90939 0.86135 0.93463 1.21724 0.92944 1.37932 1.05387 0.92711 1.24881 0.97650 0.95077 0.95695 1.69868 1.34694 1.38376 1.09439 0.86717 0.86447 0.78395 0.77188 1.20758 1.20080 1.21231 1.62712 1.57329 1.00566 1.04320 1.22594 0.98704 0.98730 0.90547 1.22697 0.99160 0.81629 0.97901 1.87879 1.74742 1.21844 1.46902 1.22859 0.97481 0.95224 0.85599 1.21993 0.98527 0.90261 0.93719 0.93030 1.21073 0.95652 0.94464 0.99466 1.21879 1.01208 0.96472 1.00810 1.21771 0.95271 1.02740 0.99654 0.94199 0.93445 0.95646 0.94967 0.88949 0.92939 0.93533 0.90323 0.93409 0.89850 0.92871 0.89729 0.89579 0.93239 0.93121 0.92883 0.93695 0.91196 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 37.16 0.36 -2.35 16 2 C -0.11 -2.60 5.07 -26.73 -0.14 -2.74 16 3 C 0.21 4.95 1.44 -68.87 -0.10 4.85 16 4 H 0.05 1.22 5.99 -51.93 -0.31 0.91 16 5 C -0.54 -14.10 7.11 -34.44 -0.24 -14.34 16 6 H 0.05 1.48 5.79 -52.49 -0.30 1.17 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.36 11.30 55.43 0.63 -23.74 16 9 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.52 -10.58 3.22 -219.79 -0.71 -11.28 16 14 C 0.02 0.44 5.00 -3.71 -0.02 0.43 16 15 C 0.06 1.05 7.01 37.21 0.26 1.31 16 16 O -0.39 -7.14 10.83 -35.23 -0.38 -7.52 16 17 C 0.07 1.09 5.58 37.21 0.21 1.30 16 18 C 0.06 1.22 1.52 -67.60 -0.10 1.12 16 19 H 0.05 1.14 6.86 -51.93 -0.36 0.78 16 20 C -0.09 -1.54 2.32 -90.62 -0.21 -1.75 16 21 C -0.15 -2.14 8.85 37.16 0.33 -1.81 16 22 C -0.14 -2.17 8.69 37.16 0.32 -1.84 16 23 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 24 H 0.05 0.89 7.75 -51.93 -0.40 0.49 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.73 6.14 -51.93 -0.32 0.41 16 27 H 0.09 2.39 5.95 -51.93 -0.31 2.09 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.05 1.02 6.47 -51.93 -0.34 0.68 16 30 H 0.08 1.51 6.12 -51.93 -0.32 1.19 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.85 6.27 -51.93 -0.33 0.52 16 34 H 0.08 1.27 6.62 -51.93 -0.34 0.93 16 35 H 0.09 1.79 6.26 -51.93 -0.33 1.46 16 36 H 0.05 0.64 6.51 -51.93 -0.34 0.31 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.64 6.36 -51.93 -0.33 0.31 16 40 H 0.07 1.22 7.60 -51.93 -0.39 0.83 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -26.82 299.87 -7.19 -34.01 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.81 Total: 2.04 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.58 Total: -14.06 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.08 Total: -35.02 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.38 Total: -7.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.82 -7.19 -34.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.449 kcal (2) G-P(sol) polarization free energy of solvation -26.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds