Wall clock time and date at job start Sun Mar 29 2020 23:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 H 1.09003 * 109.46949 * 54.99687 * 3 2 1 5 5 C 1.50694 * 109.47174 * 175.00217 * 3 2 1 6 6 H 1.08000 * 120.00563 * 119.99919 * 5 3 2 7 7 C 1.37885 * 119.99902 * 300.00082 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46903 * 109.47120 * 295.00178 * 3 2 1 14 14 C 1.47009 * 110.99721 * 298.63658 * 13 3 2 15 15 C 1.53105 * 109.25797 * 177.60831 * 14 13 3 16 16 O 1.43014 * 109.25480 * 56.84304 * 15 14 13 17 17 C 1.43012 * 113.74673 * 301.33138 * 16 15 14 18 18 C 1.47004 * 110.99931 * 175.00023 * 13 3 2 19 19 H 1.09001 * 109.50972 * 62.41202 * 18 13 3 20 20 C 1.53002 * 109.50929 * 302.32455 * 18 13 3 21 21 C 1.52996 * 109.47215 * 179.97438 * 20 18 13 22 22 C 1.52996 * 109.47110 * 300.00447 * 20 18 13 23 23 H 1.09008 * 109.46826 * 300.00212 * 1 2 3 24 24 H 1.09001 * 109.47268 * 59.99832 * 1 2 3 25 25 H 1.08999 * 109.47792 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46533 * 239.99866 * 2 1 3 27 27 H 1.09002 * 109.46745 * 120.00186 * 2 1 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.50921 * 297.53900 * 14 13 3 30 30 H 1.09001 * 109.51481 * 57.67431 * 14 13 3 31 31 H 1.09000 * 109.50616 * 296.91284 * 15 14 13 32 32 H 1.08994 * 109.54290 * 176.80411 * 15 14 13 33 33 H 1.09001 * 109.50434 * 298.74417 * 17 16 15 34 34 H 1.08990 * 109.54872 * 178.62754 * 17 16 15 35 35 H 1.09001 * 109.46762 * 60.00044 * 20 18 13 36 36 H 1.09001 * 109.46990 * 60.00464 * 21 20 18 37 37 H 1.09006 * 109.47044 * 179.97438 * 21 20 18 38 38 H 1.08996 * 109.47824 * 299.99993 * 21 20 18 39 39 H 1.09001 * 109.46979 * 299.99464 * 22 20 18 40 40 H 1.08995 * 109.47568 * 59.99455 * 22 20 18 41 41 H 1.09006 * 109.47212 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3810 10 1 6.5538 -0.3523 0.7597 11 1 6.5576 2.0717 0.6887 12 1 6.3835 0.9212 2.8164 13 7 1.6514 2.0993 -1.2552 14 6 2.2472 1.4171 -2.4132 15 6 1.7696 2.0957 -3.6998 16 8 2.1100 3.4841 -3.6551 17 6 1.5458 4.1797 -2.5401 18 6 2.0211 3.5220 -1.2418 19 1 3.1041 3.6160 -1.1607 20 6 1.3578 4.2111 -0.0476 21 6 1.7437 5.6915 -0.0340 22 6 -0.1622 4.0806 -0.1632 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8293 -0.0612 2.9499 29 1 3.3338 1.4773 -2.3517 30 1 1.9397 0.3714 -2.4176 31 1 0.6885 1.9887 -3.7881 32 1 2.2528 1.6300 -4.5587 33 1 0.4582 4.1331 -2.5946 34 1 1.8670 5.2210 -2.5595 35 1 1.6936 3.7400 0.8762 36 1 1.4081 6.1629 -0.9578 37 1 1.2707 6.1825 0.8165 38 1 2.8265 5.7841 0.0486 39 1 -0.4980 4.5517 -1.0870 40 1 -0.4367 3.0259 -0.1727 41 1 -0.6348 4.5712 0.6878 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:00 Heat of formation + Delta-G solvation = -68.381376 kcal Electronic energy + Delta-G solvation = -19540.329096 eV Core-core repulsion = 16840.257031 eV Total energy + Delta-G solvation = -2700.072065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.95561 -37.72211 -36.47771 -34.28633 -32.79839 -30.76037 -29.07283 -27.99642 -26.83059 -25.32581 -24.43095 -22.30487 -21.25353 -19.95545 -18.11657 -17.66368 -17.07677 -16.46761 -16.03992 -15.72253 -15.51668 -15.07505 -14.88997 -14.45352 -14.09677 -13.68556 -13.54531 -13.41859 -13.16681 -12.97124 -12.76434 -12.63108 -12.51187 -12.18232 -12.01194 -11.92839 -11.79605 -11.53984 -11.41686 -11.14947 -11.06662 -11.02366 -10.41114 -10.17182 -8.92513 -8.03603 -6.24573 1.31921 1.34944 1.42727 2.37789 3.01988 3.14294 3.32837 3.99082 4.07753 4.25893 4.31370 4.39542 4.46751 4.48094 4.63175 4.65881 4.73696 4.77842 4.89221 4.90367 4.93309 4.97856 5.06608 5.12518 5.19443 5.26932 5.30645 5.36770 5.45130 5.49897 5.60190 5.62093 5.67108 5.83792 6.08633 6.22266 6.28436 6.39210 6.67076 6.96377 7.45202 8.90483 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019554 B = 0.009761 C = 0.009450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.568888 B = 2867.937621 C = 2962.150178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.110 4.110 3 C 0.221 3.779 4 H 0.021 0.979 5 C -0.546 4.546 6 H 0.039 0.961 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.515 5.515 14 C 0.022 3.978 15 C 0.069 3.931 16 O -0.407 6.407 17 C 0.071 3.929 18 C 0.064 3.936 19 H 0.011 0.989 20 C -0.086 4.086 21 C -0.140 4.140 22 C -0.129 4.129 23 H 0.033 0.967 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.261 0.739 29 H 0.014 0.986 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 5.976 -7.325 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.114 3.886 4 H 0.039 0.961 5 C -0.585 4.585 6 H 0.057 0.943 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.764 3.236 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.207 1.207 13 N -0.239 5.239 14 C -0.106 4.106 15 C -0.007 4.007 16 O -0.326 6.326 17 C -0.006 4.006 18 C -0.046 4.046 19 H 0.029 0.971 20 C -0.105 4.105 21 C -0.198 4.198 22 C -0.186 4.186 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.681 5.942 -7.331 11.562 hybrid contribution 2.289 -0.518 0.954 2.533 sum -4.392 5.423 -6.377 9.453 Atomic orbital electron populations 1.21560 0.96091 0.99727 1.00746 1.21490 0.94652 0.98434 1.00232 1.19074 0.91217 0.91276 0.86994 0.96101 1.21925 0.94533 1.37249 1.04816 0.94327 1.25491 1.01103 0.95158 0.95675 1.69980 1.35873 1.39057 1.09746 0.85885 0.82394 0.78146 0.77161 1.20351 1.20388 1.20728 1.62694 1.56703 1.01240 1.03229 1.22647 0.96766 0.99325 0.91886 1.22759 1.00404 0.80827 0.96731 1.87874 1.75221 1.22413 1.47062 1.22917 0.98337 0.95775 0.83522 1.22066 0.96400 0.89867 0.96219 0.97061 1.21010 0.96951 0.95888 0.96679 1.21831 1.00671 0.94457 1.02804 1.21685 0.93566 1.01852 1.01460 0.94812 0.92241 0.93762 0.95130 0.92122 0.93005 0.96761 0.90275 0.91573 0.87409 0.91112 0.87656 0.93920 0.90752 0.91617 0.94050 0.91418 0.93196 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.80 71.98 0.71 -4.07 16 2 C -0.11 -5.11 5.07 30.59 0.16 -4.95 16 3 C 0.22 10.69 1.44 44.17 0.06 10.75 16 4 H 0.02 1.14 5.99 -2.39 -0.01 1.12 16 5 C -0.55 -29.58 7.11 25.60 0.18 -29.40 16 6 H 0.04 2.18 5.79 -2.91 -0.02 2.16 16 7 C 0.03 1.41 5.29 84.66 0.45 1.86 16 8 N -0.91 -51.44 11.30 21.45 0.24 -51.19 16 9 Si 0.94 44.26 29.54 68.60 2.03 46.29 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 N -0.51 -20.80 3.22 -849.29 -2.73 -23.54 16 14 C 0.02 0.87 5.00 86.32 0.43 1.30 16 15 C 0.07 2.14 7.01 72.02 0.50 2.64 16 16 O -0.41 -13.72 10.83 -148.98 -1.61 -15.33 16 17 C 0.07 2.19 5.58 72.02 0.40 2.59 16 18 C 0.06 2.42 1.52 44.93 0.07 2.49 16 19 H 0.01 0.52 6.86 -2.39 -0.02 0.50 16 20 C -0.09 -3.00 2.32 -10.80 -0.03 -3.02 16 21 C -0.14 -3.88 8.85 71.98 0.64 -3.24 16 22 C -0.13 -3.81 8.69 71.98 0.63 -3.19 16 23 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.03 1.39 6.14 -2.39 -0.01 1.38 16 27 H 0.06 3.23 5.95 -2.39 -0.01 3.22 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.01 0.63 6.47 -2.39 -0.02 0.62 16 30 H 0.08 3.00 6.12 -2.39 -0.01 2.99 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.07 1.98 6.27 -2.39 -0.01 1.96 16 34 H 0.11 2.82 6.62 -2.39 -0.02 2.81 16 35 H 0.04 1.84 6.26 -2.39 -0.01 1.83 16 36 H 0.07 1.69 6.51 -2.39 -0.02 1.67 16 37 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.69 6.36 -2.39 -0.02 1.68 16 40 H 0.05 1.68 7.60 -2.39 -0.02 1.66 16 41 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -59.35 299.87 3.11 -56.23 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.99 Total: 13.78 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.20 Total: -26.24 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.49 Total: -74.73 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.61 Total: -15.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -59.35 3.11 -56.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.149 kcal (2) G-P(sol) polarization free energy of solvation -59.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds