Wall clock time and date at job start Sun Mar 29 2020 23:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46904 * 109.47027 * 295.00059 * 3 2 1 14 14 C 1.46845 * 110.99832 * 299.21033 * 13 3 2 15 15 C 1.53036 * 109.52162 * 174.16110 * 14 13 3 16 16 C 1.53118 * 109.27860 * 59.18118 * 15 14 13 17 17 H 1.09003 * 109.52576 * 62.24940 * 16 15 14 18 18 O 1.42898 * 109.52267 * 182.43905 * 16 15 14 19 19 C 1.42905 * 114.00081 * 269.68373 * 18 16 15 20 20 C 1.53118 * 109.15953 * 302.34119 * 16 15 14 21 21 C 1.46847 * 110.99797 * 175.00148 * 13 3 2 22 22 H 1.08999 * 109.46528 * 65.82128 * 21 13 3 23 23 C 1.52997 * 109.46386 * 305.85191 * 21 13 3 24 24 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 26 26 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 27 27 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 28 28 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.09009 * 109.46335 * 294.17651 * 14 13 3 31 31 H 1.09000 * 109.46154 * 54.14260 * 14 13 3 32 32 H 1.08995 * 109.50739 * 299.23389 * 15 14 13 33 33 H 1.09010 * 109.49920 * 179.11589 * 15 14 13 34 34 H 1.08998 * 109.47287 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.46759 * 299.99927 * 19 18 16 36 36 H 1.09000 * 109.47319 * 59.99864 * 19 18 16 37 37 H 1.08996 * 109.50689 * 297.71669 * 20 16 15 38 38 H 1.09003 * 109.50021 * 177.59333 * 20 16 15 39 39 H 1.08997 * 109.46953 * 60.00337 * 23 21 13 40 40 H 1.08995 * 109.47193 * 180.02562 * 23 21 13 41 41 H 1.09004 * 109.47336 * 300.00162 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3750 10 1 6.5053 2.2672 1.3779 11 1 6.3984 0.2006 2.6417 12 1 6.5927 0.1354 0.2251 13 7 1.6513 2.0993 -1.2553 14 6 2.2354 1.4097 -2.4127 15 6 1.6947 2.0292 -3.7034 16 6 2.0525 3.5175 -3.7384 17 1 3.1365 3.6316 -3.7451 18 8 1.5012 4.1137 -4.9143 19 6 2.3744 4.0840 -6.0451 20 6 1.4734 4.2029 -2.4977 21 6 2.0206 3.5205 -1.2418 22 1 3.1065 3.6134 -1.2218 23 6 1.4290 4.1892 0.0006 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8296 -0.0699 2.9451 30 1 3.3204 1.5125 -2.3872 31 1 1.9700 0.3531 -2.3779 32 1 0.6113 1.9144 -3.7361 33 1 2.1405 1.5274 -4.5624 34 1 1.8830 4.5556 -6.8961 35 1 3.2914 4.6243 -5.8103 36 1 2.6150 3.0498 -6.2914 37 1 0.3865 4.1224 -2.5113 38 1 1.7611 5.2543 -2.4951 39 1 1.8194 3.7039 0.8951 40 1 1.7027 5.2442 0.0104 41 1 0.3431 4.0961 -0.0189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:35 Heat of formation + Delta-G solvation = -70.057036 kcal Electronic energy + Delta-G solvation = -19030.433319 eV Core-core repulsion = 16330.288592 eV Total energy + Delta-G solvation = -2700.144727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63539 -38.55811 -35.78232 -33.69672 -33.21821 -31.66487 -28.65813 -27.78202 -27.13101 -25.12634 -24.15412 -22.23160 -21.25268 -20.50047 -18.14744 -17.46317 -17.04039 -16.42785 -16.21076 -16.01397 -15.53247 -15.07409 -14.75138 -14.49340 -14.11453 -13.67493 -13.34756 -13.27722 -13.02161 -12.83493 -12.74639 -12.69322 -12.45993 -12.41437 -12.12580 -11.95481 -11.77174 -11.60971 -11.51128 -11.25045 -11.15411 -10.85188 -10.43480 -10.25065 -8.86159 -7.98988 -6.21268 1.36954 1.38530 1.44820 2.40983 2.82669 3.18282 3.39973 3.90834 3.93879 4.18777 4.29193 4.51719 4.52804 4.55304 4.59066 4.61657 4.66538 4.75528 4.78662 4.85918 4.93938 4.96504 5.01659 5.06519 5.10110 5.16047 5.33293 5.34675 5.41415 5.45503 5.50817 5.56658 5.68332 5.86388 6.12794 6.27517 6.31238 6.45485 6.76210 7.00883 7.49019 8.94577 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.007900 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.557882 B = 3543.478746 C = 3933.734850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C 0.217 3.783 4 H 0.022 0.978 5 C -0.546 4.546 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.939 3.061 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.526 5.526 14 C 0.066 3.934 15 C -0.125 4.125 16 C 0.094 3.906 17 H 0.053 0.947 18 O -0.401 6.401 19 C 0.024 3.976 20 C -0.097 4.097 21 C 0.092 3.908 22 H 0.019 0.981 23 C -0.133 4.133 24 H 0.043 0.957 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.068 0.932 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 5.465 -11.232 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.149 4.149 3 C 0.110 3.890 4 H 0.040 0.960 5 C -0.585 4.585 6 H 0.063 0.937 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.765 3.235 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.250 5.250 14 C -0.062 4.062 15 C -0.163 4.163 16 C 0.036 3.964 17 H 0.071 0.929 18 O -0.321 6.321 19 C -0.072 4.072 20 C -0.135 4.135 21 C -0.017 4.017 22 H 0.037 0.963 23 C -0.191 4.191 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.358 5.429 -11.098 12.803 hybrid contribution 2.433 -0.386 0.581 2.531 sum -0.924 5.043 -10.518 11.701 Atomic orbital electron populations 1.21563 0.96368 0.99652 1.00688 1.21516 0.94464 0.98630 1.00286 1.19131 0.91515 0.91257 0.87079 0.95990 1.21922 0.94310 1.37230 1.05084 0.93703 1.25524 1.01211 0.95133 0.95692 1.69978 1.36057 1.38947 1.09876 0.85919 0.82204 0.78080 0.77248 1.20196 1.20969 1.20168 1.62409 1.57953 1.01437 1.03220 1.21836 0.95843 0.98365 0.90172 1.22011 1.02145 0.95392 0.96751 1.22113 0.96446 0.92460 0.85357 0.92936 1.87864 1.43499 1.80520 1.20198 1.22956 0.94401 1.01183 0.88625 1.21620 1.01550 0.98910 0.91396 1.21333 0.96392 0.89097 0.94922 0.96339 1.21734 1.00879 0.99642 0.96819 0.93791 0.94799 0.92503 0.95063 0.91975 0.93029 0.96738 0.91477 0.91033 0.90900 0.87982 0.93693 0.93659 0.90879 0.90520 0.94145 0.91332 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.80 71.98 0.71 -4.29 16 2 C -0.11 -5.21 5.06 30.59 0.15 -5.06 16 3 C 0.22 10.53 1.36 44.17 0.06 10.59 16 4 H 0.02 1.20 5.92 -2.38 -0.01 1.18 16 5 C -0.55 -28.98 7.19 25.60 0.18 -28.79 16 6 H 0.04 2.41 5.84 -2.91 -0.02 2.39 16 7 C 0.02 1.31 5.29 84.65 0.45 1.76 16 8 N -0.91 -51.26 11.28 21.45 0.24 -51.02 16 9 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 13 N -0.53 -21.55 3.93 -850.37 -3.34 -24.89 16 14 C 0.07 2.53 4.80 86.33 0.41 2.95 16 15 C -0.12 -3.86 5.72 30.65 0.18 -3.69 16 16 C 0.09 2.80 2.68 30.67 0.08 2.89 16 17 H 0.05 1.58 7.79 -2.39 -0.02 1.56 16 18 O -0.40 -11.15 10.35 -148.98 -1.54 -12.70 16 19 C 0.02 0.49 10.82 113.37 1.23 1.72 16 20 C -0.10 -3.02 5.03 30.65 0.15 -2.87 16 21 C 0.09 3.45 2.10 44.94 0.09 3.54 16 22 H 0.02 0.79 6.96 -2.39 -0.02 0.77 16 23 C -0.13 -4.82 8.78 71.98 0.63 -4.19 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 27 H 0.03 1.44 6.05 -2.39 -0.01 1.43 16 28 H 0.06 3.32 5.94 -2.38 -0.01 3.31 16 29 H 0.26 14.13 8.31 -92.71 -0.77 13.35 16 30 H 0.01 0.61 6.63 -2.38 -0.02 0.59 16 31 H 0.07 2.64 5.93 -2.39 -0.01 2.63 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 1.98 7.96 -2.38 -0.02 1.96 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.04 0.85 7.96 -2.39 -0.02 0.84 16 37 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 39 H 0.04 1.72 6.22 -2.39 -0.01 1.70 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -57.45 307.53 2.69 -54.76 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.98 Total: 14.01 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.33 Total: -25.44 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -3.10 Total: -75.92 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.54 Total: -12.70 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -57.45 2.69 -54.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.300 kcal (2) G-P(sol) polarization free energy of solvation -57.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds