Wall clock time and date at job start Sun Mar 29 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47043 * 2 1 4 4 C 1.52996 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.53106 * 109.57857 * 294.70579 * 4 3 2 6 6 C 1.53032 * 109.28883 * 182.40598 * 5 4 3 7 7 N 1.46843 * 109.51876 * 59.18515 * 6 5 4 8 8 C 1.46898 * 111.00155 * 174.16035 * 7 6 5 9 9 C 1.52992 * 109.47383 * 284.21882 * 8 7 6 10 10 H 1.08997 * 109.47369 * 57.14505 * 9 8 7 11 11 O 1.42896 * 109.47180 * 297.14184 * 9 8 7 12 12 C 1.50707 * 109.47251 * 177.14012 * 9 8 7 13 13 H 1.07999 * 119.99656 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00203 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99715 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00139 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46998 * 90.00005 * 16 14 12 18 18 H 1.48497 * 109.47130 * 210.00320 * 16 14 12 19 19 H 1.48501 * 109.46870 * 330.00464 * 16 14 12 20 20 C 1.46846 * 111.19891 * 298.26330 * 7 6 5 21 21 C 1.53039 * 109.52322 * 61.73541 * 20 7 6 22 22 H 1.08997 * 109.47511 * 300.00185 * 1 2 3 23 23 H 1.09003 * 109.47003 * 60.00654 * 1 2 3 24 24 H 1.09005 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47511 * 239.99815 * 2 1 3 26 26 H 1.09001 * 109.47196 * 119.99847 * 2 1 3 27 27 H 1.08997 * 109.47118 * 59.99574 * 3 2 1 28 28 H 1.09003 * 109.46687 * 299.99539 * 3 2 1 29 29 H 1.08998 * 109.52574 * 54.86858 * 4 3 2 30 30 H 1.09002 * 109.48370 * 62.46840 * 5 4 3 31 31 H 1.09000 * 109.50488 * 302.35757 * 5 4 3 32 32 H 1.09001 * 109.46155 * 299.17160 * 6 5 4 33 33 H 1.09006 * 109.46028 * 179.19819 * 6 5 4 34 34 H 1.09004 * 109.47030 * 44.22243 * 8 7 6 35 35 H 1.08998 * 109.46930 * 164.21489 * 8 7 6 36 36 H 0.96702 * 114.00435 * 299.99622 * 11 9 8 37 37 H 0.97004 * 119.99684 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.46188 * 181.75384 * 20 7 6 39 39 H 1.09000 * 109.45947 * 301.73320 * 20 7 6 40 40 H 1.09005 * 109.49728 * 60.76717 * 21 20 7 41 41 H 1.09002 * 109.50349 * 180.83666 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0824 0.8398 1.3114 6 6 5.6115 0.8979 1.3308 7 7 6.0510 2.2937 1.2084 8 6 7.5079 2.4023 1.3620 9 6 7.8769 2.2600 2.8400 10 1 7.5000 1.3101 3.2188 11 8 7.2945 3.3335 3.5818 12 6 9.3760 2.3011 2.9897 13 1 10.0027 2.4175 2.1179 14 6 9.9472 2.1912 4.2397 15 7 9.1840 2.0499 5.3013 16 14 11.8053 2.2428 4.4253 17 1 12.2443 3.6479 4.6213 18 1 12.2081 1.4298 5.6008 19 1 12.4405 1.6920 3.2013 20 6 5.6108 2.8793 -0.0643 21 6 4.0817 2.8801 -0.1252 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9563 0.8899 28 1 1.6766 1.9562 -0.8901 29 1 3.9346 0.8512 -0.8393 30 1 3.7567 -0.1977 1.3864 31 1 3.6859 1.4080 2.1529 32 1 6.0076 0.3180 0.4971 33 1 5.9789 0.4824 2.2692 34 1 7.9936 1.6127 0.7886 35 1 7.8403 3.3738 0.9964 36 1 7.5856 4.2110 3.2983 37 1 9.5859 1.9722 6.1808 38 1 5.9778 3.9029 -0.1392 39 1 6.0068 2.2901 -0.8914 40 1 3.6852 3.4805 0.6937 41 1 3.7556 3.3012 -1.0762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332650535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:07 Heat of formation + Delta-G solvation = -79.063491 kcal Electronic energy + Delta-G solvation = -17988.533927 eV Core-core repulsion = 15287.998651 eV Total energy + Delta-G solvation = -2700.535276 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.98436 -36.25765 -34.78699 -32.26322 -31.99324 -30.51502 -28.60173 -26.66209 -24.30712 -23.04210 -22.33153 -20.72624 -20.10047 -19.39960 -16.96148 -15.37315 -15.19065 -14.74486 -14.57235 -14.30892 -14.20460 -13.73418 -13.59285 -13.14717 -13.01735 -12.79984 -12.30875 -12.01131 -11.72427 -11.57716 -11.27875 -11.06912 -10.91281 -10.88516 -10.77210 -10.70084 -10.52962 -10.36622 -10.10390 -9.86068 -9.80597 -8.94046 -8.52963 -8.06457 -7.49190 -5.95948 -4.14366 3.29691 3.36557 3.39096 4.36305 4.55839 4.71237 4.84079 4.94772 5.13430 5.21913 5.31370 5.34567 5.51958 5.61543 5.63815 5.68528 5.79603 5.84807 5.86223 5.90538 5.97375 6.04950 6.12594 6.17805 6.22145 6.25219 6.31425 6.39429 6.45964 6.52079 6.62407 6.74000 6.88502 7.65396 7.72697 7.84041 7.97753 8.26390 8.90123 9.51719 9.68852 11.08063 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048767 B = 0.004491 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.025642 B = 6233.259786 C = 6448.785396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.088 4.088 5 C -0.109 4.109 6 C 0.057 3.943 7 N -0.526 5.526 8 C 0.031 3.969 9 C 0.240 3.760 10 H 0.053 0.947 11 O -0.554 6.554 12 C -0.575 4.575 13 H 0.053 0.947 14 C 0.080 3.920 15 N -0.858 5.858 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.055 3.945 21 C -0.109 4.109 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.021 0.979 33 H 0.079 0.921 34 H 0.026 0.974 35 H 0.059 0.941 36 H 0.340 0.660 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.020 0.980 40 H 0.070 0.930 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 -1.734 -11.130 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.147 4.147 6 C -0.071 4.071 7 N -0.250 5.250 8 C -0.096 4.096 9 C 0.182 3.818 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.613 4.613 13 H 0.072 0.928 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.073 4.073 21 C -0.147 4.147 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.183 0.817 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.312 -2.009 -10.241 16.915 hybrid contribution 1.853 -0.051 -0.899 2.060 sum -11.459 -2.061 -11.140 16.114 Atomic orbital electron populations 1.21779 0.96263 1.01286 1.01616 1.21584 0.95412 0.97354 1.02085 1.21637 0.95143 0.96447 1.01765 1.21211 0.94598 0.96674 0.98158 1.21661 0.95365 1.00171 0.97507 1.22066 0.94902 0.89218 1.00892 1.61938 1.14292 1.17171 1.31644 1.23086 0.84691 0.99666 1.02200 1.19272 0.91079 0.88098 0.83380 0.92914 1.86568 1.70801 1.15466 1.62683 1.21688 0.92526 1.54001 0.93107 0.92838 1.25024 0.97705 0.93923 0.95983 1.70092 1.34555 1.46535 0.98215 0.86693 0.86012 0.78095 0.77668 1.20533 1.21132 1.19925 1.22068 0.95173 0.99348 0.90712 1.21616 0.95331 0.96452 1.01285 0.92773 0.93039 0.93054 0.92376 0.91625 0.91871 0.92432 0.92019 0.92052 0.91034 0.96093 0.90217 0.95528 0.92200 0.81676 0.93046 0.91346 0.96134 0.91101 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.21 5.70 -26.73 -0.15 -1.36 16 3 C -0.11 -1.17 4.69 -26.73 -0.13 -1.30 16 4 C -0.09 -1.08 2.25 -90.51 -0.20 -1.29 16 5 C -0.11 -1.56 5.08 -26.66 -0.14 -1.69 16 6 C 0.06 1.00 5.29 -3.84 -0.02 0.98 16 7 N -0.53 -9.86 4.50 -234.68 -1.06 -10.92 16 8 C 0.03 0.66 4.59 -3.83 -0.02 0.64 16 9 C 0.24 6.21 2.90 -27.88 -0.08 6.13 16 10 H 0.05 1.51 6.76 -51.93 -0.35 1.16 16 11 O -0.55 -14.81 12.64 -35.23 -0.45 -15.25 16 12 C -0.57 -16.03 8.76 -34.44 -0.30 -16.33 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 15 N -0.86 -25.76 12.84 55.43 0.71 -25.05 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.06 0.86 5.43 -3.83 -0.02 0.84 16 21 C -0.11 -1.43 5.38 -26.65 -0.14 -1.57 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.66 6.64 -51.93 -0.34 0.31 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.78 6.71 -51.93 -0.35 0.43 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 1.56 6.68 -51.93 -0.35 1.21 16 34 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 35 H 0.06 1.23 7.79 -51.93 -0.40 0.83 16 36 H 0.34 8.18 9.04 45.56 0.41 8.59 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -30.21 319.50 -8.75 -38.96 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.82 Total: 4.78 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.93 Total: -13.69 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.34 Total: -35.97 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.45 Total: -15.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.21 -8.75 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332650535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.102 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds