Wall clock time and date at job start Sun Mar 29 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47043 * 2 1 4 4 C 1.52996 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.53106 * 109.57857 * 294.70579 * 4 3 2 6 6 C 1.53032 * 109.28883 * 182.40598 * 5 4 3 7 7 N 1.46843 * 109.51876 * 59.18515 * 6 5 4 8 8 C 1.46898 * 111.00155 * 174.16035 * 7 6 5 9 9 C 1.52992 * 109.47383 * 284.21882 * 8 7 6 10 10 H 1.08997 * 109.47369 * 57.14505 * 9 8 7 11 11 O 1.42896 * 109.47180 * 297.14184 * 9 8 7 12 12 C 1.50707 * 109.47251 * 177.14012 * 9 8 7 13 13 H 1.07999 * 119.99656 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00203 * 179.97438 * 12 9 8 15 15 N 1.31516 * 119.99715 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00139 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.46998 * 90.00005 * 16 14 12 18 18 H 1.48497 * 109.47130 * 210.00320 * 16 14 12 19 19 H 1.48501 * 109.46870 * 330.00464 * 16 14 12 20 20 C 1.46846 * 111.19891 * 298.26330 * 7 6 5 21 21 C 1.53039 * 109.52322 * 61.73541 * 20 7 6 22 22 H 1.08997 * 109.47511 * 300.00185 * 1 2 3 23 23 H 1.09003 * 109.47003 * 60.00654 * 1 2 3 24 24 H 1.09005 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47511 * 239.99815 * 2 1 3 26 26 H 1.09001 * 109.47196 * 119.99847 * 2 1 3 27 27 H 1.08997 * 109.47118 * 59.99574 * 3 2 1 28 28 H 1.09003 * 109.46687 * 299.99539 * 3 2 1 29 29 H 1.08998 * 109.52574 * 54.86858 * 4 3 2 30 30 H 1.09002 * 109.48370 * 62.46840 * 5 4 3 31 31 H 1.09000 * 109.50488 * 302.35757 * 5 4 3 32 32 H 1.09001 * 109.46155 * 299.17160 * 6 5 4 33 33 H 1.09006 * 109.46028 * 179.19819 * 6 5 4 34 34 H 1.09004 * 109.47030 * 44.22243 * 8 7 6 35 35 H 1.08998 * 109.46930 * 164.21489 * 8 7 6 36 36 H 0.96702 * 114.00435 * 299.99622 * 11 9 8 37 37 H 0.97004 * 119.99684 * 179.97438 * 15 14 12 38 38 H 1.08996 * 109.46188 * 181.75384 * 20 7 6 39 39 H 1.09000 * 109.45947 * 301.73320 * 20 7 6 40 40 H 1.09005 * 109.49728 * 60.76717 * 21 20 7 41 41 H 1.09002 * 109.50349 * 180.83666 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0824 0.8398 1.3114 6 6 5.6115 0.8979 1.3308 7 7 6.0510 2.2937 1.2084 8 6 7.5079 2.4023 1.3620 9 6 7.8769 2.2600 2.8400 10 1 7.5000 1.3101 3.2188 11 8 7.2945 3.3335 3.5818 12 6 9.3760 2.3011 2.9897 13 1 10.0027 2.4175 2.1179 14 6 9.9472 2.1912 4.2397 15 7 9.1840 2.0499 5.3013 16 14 11.8053 2.2428 4.4253 17 1 12.2443 3.6479 4.6213 18 1 12.2081 1.4298 5.6008 19 1 12.4405 1.6920 3.2013 20 6 5.6108 2.8793 -0.0643 21 6 4.0817 2.8801 -0.1252 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9563 0.8899 28 1 1.6766 1.9562 -0.8901 29 1 3.9346 0.8512 -0.8393 30 1 3.7567 -0.1977 1.3864 31 1 3.6859 1.4080 2.1529 32 1 6.0076 0.3180 0.4971 33 1 5.9789 0.4824 2.2692 34 1 7.9936 1.6127 0.7886 35 1 7.8403 3.3738 0.9964 36 1 7.5856 4.2110 3.2983 37 1 9.5859 1.9722 6.1808 38 1 5.9778 3.9029 -0.1392 39 1 6.0068 2.2901 -0.8914 40 1 3.6852 3.4805 0.6937 41 1 3.7556 3.3012 -1.0762 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332650535.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:07 Heat of formation + Delta-G solvation = -99.473223 kcal Electronic energy + Delta-G solvation = -17989.418959 eV Core-core repulsion = 15287.998651 eV Total energy + Delta-G solvation = -2701.420308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26456 -37.87498 -36.21895 -34.22303 -33.37123 -31.74687 -30.26842 -28.07170 -25.97594 -24.26186 -23.62035 -21.99253 -21.53761 -20.56904 -19.05259 -16.71531 -16.65802 -16.42381 -16.29033 -15.82065 -15.30972 -15.17579 -14.92904 -14.47418 -14.35452 -14.25425 -13.54186 -13.17587 -13.09329 -12.92988 -12.83666 -12.74352 -12.48071 -12.18774 -12.08255 -12.03650 -11.97221 -11.53456 -11.45208 -11.17869 -10.90583 -10.87306 -10.69169 -10.09368 -9.03482 -8.12697 -6.39483 1.40192 1.40820 1.51808 2.38393 3.08595 3.13516 3.78442 3.86506 3.91393 4.20446 4.26329 4.29367 4.36057 4.42047 4.48263 4.54071 4.60215 4.68063 4.71114 4.84055 4.88119 4.93039 4.98110 5.02735 5.07219 5.11202 5.18740 5.23382 5.28451 5.36741 5.43195 5.53051 5.60453 5.62792 5.76291 6.03846 6.26466 6.39703 6.74899 7.35003 7.63762 8.91780 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048767 B = 0.004491 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.025642 B = 6233.259786 C = 6448.785396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.082 4.082 5 C -0.102 4.102 6 C 0.057 3.943 7 N -0.541 5.541 8 C 0.048 3.952 9 C 0.241 3.759 10 H 0.015 0.985 11 O -0.570 6.570 12 C -0.590 4.590 13 H 0.058 0.942 14 C 0.025 3.975 15 N -0.900 5.900 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.053 3.947 21 C -0.104 4.104 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.351 0.649 37 H 0.261 0.739 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.078 -1.452 -12.936 18.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.144 4.144 4 C -0.101 4.101 5 C -0.140 4.140 6 C -0.071 4.071 7 N -0.266 5.266 8 C -0.080 4.080 9 C 0.183 3.817 10 H 0.033 0.967 11 O -0.373 6.373 12 C -0.628 4.628 13 H 0.077 0.923 14 C -0.177 4.177 15 N -0.537 5.537 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.074 4.074 21 C -0.142 4.142 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.617 -1.721 -12.070 18.278 hybrid contribution 1.907 -0.145 -0.337 1.941 sum -11.710 -1.866 -12.407 17.162 Atomic orbital electron populations 1.21765 0.95323 1.01827 1.01904 1.21579 0.96267 0.96678 1.01931 1.21576 0.93415 0.97168 1.02193 1.21178 0.96006 0.96068 0.96813 1.21609 0.92800 1.01180 0.98372 1.22059 0.97126 0.88588 0.99342 1.61860 1.12410 1.18105 1.34196 1.22681 0.86738 0.99892 0.98655 1.19120 0.90252 0.86410 0.85968 0.96675 1.86509 1.71009 1.16265 1.63557 1.22077 0.93712 1.53605 0.93454 0.92335 1.25926 1.02895 0.93346 0.95580 1.70239 1.36888 1.47803 0.98768 0.85530 0.79642 0.78388 0.77825 1.19659 1.20846 1.18931 1.22182 0.96983 0.99234 0.89037 1.21607 0.93288 0.96921 1.02351 0.92988 0.92259 0.92448 0.91856 0.92475 0.92484 0.90936 0.91303 0.90532 0.92694 0.95388 0.93633 0.95864 0.91364 0.80492 0.92996 0.91024 0.95353 0.92183 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.13 -2.15 5.70 30.59 0.17 -1.98 16 3 C -0.11 -1.95 4.69 30.59 0.14 -1.81 16 4 C -0.08 -1.85 2.25 -10.72 -0.02 -1.87 16 5 C -0.10 -2.86 5.08 30.64 0.16 -2.70 16 6 C 0.06 2.01 5.29 86.32 0.46 2.47 16 7 N -0.54 -20.30 4.50 -896.40 -4.03 -24.33 16 8 C 0.05 2.08 4.59 86.30 0.40 2.47 16 9 C 0.24 12.84 2.90 29.85 0.09 12.93 16 10 H 0.02 0.93 6.76 -2.39 -0.02 0.91 16 11 O -0.57 -31.31 12.64 -148.98 -1.88 -33.19 16 12 C -0.59 -33.29 8.76 25.60 0.22 -33.07 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.02 1.42 5.40 84.65 0.46 1.88 16 15 N -0.90 -55.17 12.84 21.45 0.28 -54.90 16 16 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.05 1.56 5.43 86.33 0.47 2.03 16 21 C -0.10 -2.48 5.38 30.65 0.16 -2.31 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.06 6.64 -2.39 -0.02 1.04 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.90 6.71 -2.39 -0.02 1.88 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.89 6.68 -2.38 -0.02 1.88 16 34 H 0.02 1.00 8.00 -2.38 -0.02 0.98 16 35 H 0.07 2.78 7.79 -2.39 -0.02 2.76 16 36 H 0.35 17.15 9.04 -74.06 -0.67 16.48 16 37 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 38 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 39 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -65.24 319.50 0.11 -65.13 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.30 Total: 24.75 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.42 Total: -23.46 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.76 Total: -79.23 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.88 Total: -33.19 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.24 0.11 -65.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332650535.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.342 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds