Wall clock time and date at job start Sun Mar 29 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46774 * 2 1 4 4 C 1.53001 * 109.46844 * 174.87435 * 3 2 1 5 5 H 1.08992 * 109.45870 * 300.95848 * 4 3 2 6 6 C 1.53041 * 109.46137 * 60.93315 * 4 3 2 7 7 C 1.53118 * 109.27774 * 179.19277 * 6 4 3 8 8 C 1.53120 * 109.15912 * 302.34449 * 7 6 4 9 9 C 1.53039 * 109.28073 * 57.65774 * 8 7 6 10 10 N 1.46846 * 109.51812 * 300.81868 * 9 8 7 11 11 C 1.46906 * 110.99935 * 185.83768 * 10 9 8 12 12 C 1.53001 * 109.47000 * 76.62535 * 11 10 9 13 13 H 1.09005 * 109.46642 * 53.36650 * 12 11 10 14 14 O 1.42901 * 109.47305 * 293.36801 * 12 11 10 15 15 C 1.50692 * 109.47041 * 173.36972 * 12 11 10 16 16 H 1.07998 * 120.00237 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00307 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99600 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00448 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47064 * 179.97438 * 19 17 15 21 21 H 1.48509 * 109.46862 * 299.99555 * 19 17 15 22 22 H 1.48492 * 109.47219 * 59.99382 * 19 17 15 23 23 H 1.09004 * 109.47273 * 299.99895 * 1 2 3 24 24 H 1.09001 * 109.47050 * 60.00146 * 1 2 3 25 25 H 1.09002 * 109.46828 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47158 * 240.00087 * 2 1 3 27 27 H 1.08996 * 109.47332 * 119.99482 * 2 1 3 28 28 H 1.09000 * 109.47183 * 54.87676 * 3 2 1 29 29 H 1.08996 * 109.47060 * 294.87351 * 3 2 1 30 30 H 1.09009 * 109.50328 * 59.25175 * 6 4 3 31 31 H 1.08995 * 109.53888 * 299.15601 * 6 4 3 32 32 H 1.09005 * 109.51959 * 182.44477 * 7 6 4 33 33 H 1.08992 * 109.52195 * 62.25128 * 7 6 4 34 34 H 1.09004 * 109.50539 * 297.71150 * 8 7 6 35 35 H 1.08996 * 109.50084 * 177.59580 * 8 7 6 36 36 H 1.08991 * 109.46279 * 180.80582 * 9 8 7 37 37 H 1.08997 * 109.45263 * 60.82201 * 9 8 7 38 38 H 1.08995 * 109.46864 * 316.62897 * 11 10 9 39 39 H 1.08994 * 109.47277 * 196.62781 * 11 10 9 40 40 H 0.96701 * 114.00023 * 300.00372 * 14 12 11 41 41 H 0.97006 * 120.00116 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5645 1.4445 0.1289 5 1 3.8514 0.9428 1.0529 6 6 4.1780 0.7069 -1.0635 7 6 5.7041 0.7288 -0.9408 8 6 6.1816 2.1819 -0.8694 9 6 5.5102 2.8768 0.3174 10 7 4.0518 2.8296 0.1525 11 6 3.3780 3.6068 1.2014 12 6 3.4951 5.0992 0.8851 13 1 3.1330 5.2858 -0.1260 14 8 4.8630 5.5009 0.9829 15 6 2.6687 5.8874 1.8682 16 1 2.1149 5.3752 2.6411 17 6 2.6186 7.2625 1.7805 18 7 3.2926 7.8862 0.8391 19 14 1.5947 8.2396 2.9996 20 1 1.7083 9.6881 2.6925 21 1 0.1732 7.8218 2.8990 22 1 2.0889 7.9857 4.3767 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6036 1.9822 0.8405 29 1 1.7535 1.9292 -0.9323 30 1 3.8801 1.2001 -1.9889 31 1 3.8284 -0.3254 -1.0726 32 1 6.1464 0.2423 -1.8101 33 1 6.0042 0.2018 -0.0352 34 1 5.9154 2.6982 -1.7917 35 1 7.2636 2.2033 -0.7390 36 1 5.8371 3.9155 0.3624 37 1 5.7879 2.3681 1.2405 38 1 3.8470 3.4015 2.1636 39 1 2.3257 3.3257 1.2427 40 1 5.2519 5.3632 1.8575 41 1 3.8246 7.3788 0.2062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332872789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:17 Heat of formation + Delta-G solvation = -77.914257 kcal Electronic energy + Delta-G solvation = -18566.143123 eV Core-core repulsion = 15865.657681 eV Total energy + Delta-G solvation = -2700.485441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.21089 -36.10447 -34.75773 -32.87199 -32.08041 -30.55850 -28.22375 -26.34168 -24.50041 -23.02185 -22.06169 -20.77848 -20.22897 -19.36821 -17.24381 -15.52120 -15.24076 -15.05049 -14.75945 -14.15753 -13.88445 -13.68177 -13.54841 -13.26983 -12.98927 -12.60770 -12.36124 -12.17595 -11.75686 -11.53239 -11.30851 -11.09839 -10.92344 -10.80121 -10.73036 -10.54558 -10.45750 -10.15864 -10.10099 -9.85858 -9.64150 -9.11813 -8.42869 -8.02608 -7.55337 -6.31142 -4.14375 3.43430 3.44717 3.64045 4.33821 4.56701 4.92788 4.96027 5.11894 5.14434 5.24796 5.30100 5.38062 5.43705 5.62940 5.75521 5.77043 5.81530 5.91477 5.92138 5.95228 5.98748 6.10812 6.13698 6.14963 6.20876 6.24328 6.29945 6.38016 6.49560 6.50715 6.67285 6.68678 6.90612 7.48853 7.76467 7.79202 8.10499 8.39760 8.90265 9.14965 9.71464 11.08914 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.006962 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.912480 B = 4020.796680 C = 5071.661392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.084 3.916 5 H 0.028 0.972 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.115 4.115 9 C 0.044 3.956 10 N -0.528 5.528 11 C 0.033 3.967 12 C 0.222 3.778 13 H 0.057 0.943 14 O -0.577 6.577 15 C -0.650 4.650 16 H 0.046 0.954 17 C 0.035 3.965 18 N -0.892 5.892 19 Si 1.065 2.935 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.289 1.289 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.015 0.985 38 H 0.020 0.980 39 H 0.076 0.924 40 H 0.348 0.652 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -15.088 -1.759 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.025 4.025 5 H 0.046 0.954 6 C -0.147 4.147 7 C -0.158 4.158 8 C -0.153 4.153 9 C -0.084 4.084 10 N -0.252 5.252 11 C -0.094 4.094 12 C 0.165 3.835 13 H 0.074 0.926 14 O -0.381 6.381 15 C -0.688 4.688 16 H 0.065 0.935 17 C -0.174 4.174 18 N -0.527 5.527 19 Si 0.894 3.106 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.215 1.215 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.033 0.967 38 H 0.038 0.962 39 H 0.094 0.906 40 H 0.193 0.807 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.000 -13.190 -2.447 13.416 hybrid contribution 0.624 -2.226 1.079 2.552 sum 0.624 -15.417 -1.368 15.490 Atomic orbital electron populations 1.21771 0.96009 1.01081 1.02053 1.21548 0.95690 0.97172 1.01553 1.21803 0.94520 0.96133 1.03212 1.21609 0.94469 0.89961 0.96464 0.95415 1.21644 0.94934 0.99217 0.98947 1.21588 0.96126 0.97236 1.00844 1.21582 0.98772 0.95091 0.99883 1.22465 0.87674 1.03224 0.95022 1.62002 1.04810 1.09920 1.48490 1.23030 0.98421 0.97350 0.90638 1.19541 0.79695 0.86797 0.97499 0.92579 1.86464 1.28954 1.87832 1.34831 1.22432 1.33941 0.94549 1.17921 0.93522 1.25747 0.97100 0.95437 0.99103 1.70625 1.26666 1.40248 1.15142 0.83625 0.75641 0.76252 0.75115 1.20749 1.21485 1.21542 0.92725 0.92672 0.93157 0.92025 0.92541 0.91217 0.91124 0.91319 0.92111 0.92475 0.92873 0.91324 0.92320 0.87287 0.96684 0.96171 0.90564 0.80705 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.42 5.45 -26.73 -0.15 -1.57 16 3 C -0.12 -1.74 4.44 -26.73 -0.12 -1.86 16 4 C 0.08 1.30 1.96 -67.72 -0.13 1.16 16 5 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 6 C -0.11 -1.46 5.02 -26.65 -0.13 -1.60 16 7 C -0.12 -1.54 6.00 -26.61 -0.16 -1.70 16 8 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 9 C 0.04 0.76 5.21 -3.83 -0.02 0.74 16 10 N -0.53 -9.77 4.41 -226.69 -1.00 -10.77 16 11 C 0.03 0.69 4.58 -3.82 -0.02 0.67 16 12 C 0.22 5.62 2.64 -27.89 -0.07 5.55 16 13 H 0.06 1.59 8.01 -51.93 -0.42 1.17 16 14 O -0.58 -14.26 9.16 -35.23 -0.32 -14.59 16 15 C -0.65 -18.15 8.76 -34.44 -0.30 -18.45 16 16 H 0.05 1.29 7.74 -52.49 -0.41 0.88 16 17 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 18 N -0.89 -27.39 13.53 55.43 0.75 -26.64 16 19 Si 1.07 25.12 29.90 -169.99 -5.08 20.04 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.67 6.75 -51.93 -0.35 0.32 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.12 5.86 -51.93 -0.30 0.81 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.06 0.70 6.62 -51.93 -0.34 0.36 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 2.12 5.24 -51.93 -0.27 1.85 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.02 0.43 7.99 -51.93 -0.41 0.01 16 39 H 0.08 1.60 5.21 -51.93 -0.27 1.33 16 40 H 0.35 7.84 9.02 45.56 0.41 8.25 16 41 H 0.29 8.92 6.47 -40.82 -0.26 8.66 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -29.79 310.40 -8.47 -38.26 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.50 Total: 8.28 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.99 Total: -19.26 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.25 Total: -37.41 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.32 Total: -14.59 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.79 -8.47 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332872789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.654 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds