Wall clock time and date at job start Sun Mar 29 2020 22:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46774 * 2 1 4 4 C 1.53001 * 109.46844 * 174.87435 * 3 2 1 5 5 H 1.08992 * 109.45870 * 300.95848 * 4 3 2 6 6 C 1.53041 * 109.46137 * 60.93315 * 4 3 2 7 7 C 1.53118 * 109.27774 * 179.19277 * 6 4 3 8 8 C 1.53120 * 109.15912 * 302.34449 * 7 6 4 9 9 C 1.53039 * 109.28073 * 57.65774 * 8 7 6 10 10 N 1.46846 * 109.51812 * 300.81868 * 9 8 7 11 11 C 1.46906 * 110.99935 * 185.83768 * 10 9 8 12 12 C 1.53001 * 109.47000 * 76.62535 * 11 10 9 13 13 H 1.09005 * 109.46642 * 53.36650 * 12 11 10 14 14 O 1.42901 * 109.47305 * 293.36801 * 12 11 10 15 15 C 1.50692 * 109.47041 * 173.36972 * 12 11 10 16 16 H 1.07998 * 120.00237 * 359.97438 * 15 12 11 17 17 C 1.37880 * 120.00307 * 180.02562 * 15 12 11 18 18 N 1.31515 * 119.99600 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00448 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47064 * 179.97438 * 19 17 15 21 21 H 1.48509 * 109.46862 * 299.99555 * 19 17 15 22 22 H 1.48492 * 109.47219 * 59.99382 * 19 17 15 23 23 H 1.09004 * 109.47273 * 299.99895 * 1 2 3 24 24 H 1.09001 * 109.47050 * 60.00146 * 1 2 3 25 25 H 1.09002 * 109.46828 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47158 * 240.00087 * 2 1 3 27 27 H 1.08996 * 109.47332 * 119.99482 * 2 1 3 28 28 H 1.09000 * 109.47183 * 54.87676 * 3 2 1 29 29 H 1.08996 * 109.47060 * 294.87351 * 3 2 1 30 30 H 1.09009 * 109.50328 * 59.25175 * 6 4 3 31 31 H 1.08995 * 109.53888 * 299.15601 * 6 4 3 32 32 H 1.09005 * 109.51959 * 182.44477 * 7 6 4 33 33 H 1.08992 * 109.52195 * 62.25128 * 7 6 4 34 34 H 1.09004 * 109.50539 * 297.71150 * 8 7 6 35 35 H 1.08996 * 109.50084 * 177.59580 * 8 7 6 36 36 H 1.08991 * 109.46279 * 180.80582 * 9 8 7 37 37 H 1.08997 * 109.45263 * 60.82201 * 9 8 7 38 38 H 1.08995 * 109.46864 * 316.62897 * 11 10 9 39 39 H 1.08994 * 109.47277 * 196.62781 * 11 10 9 40 40 H 0.96701 * 114.00023 * 300.00372 * 14 12 11 41 41 H 0.97006 * 120.00116 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5645 1.4445 0.1289 5 1 3.8514 0.9428 1.0529 6 6 4.1780 0.7069 -1.0635 7 6 5.7041 0.7288 -0.9408 8 6 6.1816 2.1819 -0.8694 9 6 5.5102 2.8768 0.3174 10 7 4.0518 2.8296 0.1525 11 6 3.3780 3.6068 1.2014 12 6 3.4951 5.0992 0.8851 13 1 3.1330 5.2858 -0.1260 14 8 4.8630 5.5009 0.9829 15 6 2.6687 5.8874 1.8682 16 1 2.1149 5.3752 2.6411 17 6 2.6186 7.2625 1.7805 18 7 3.2926 7.8862 0.8391 19 14 1.5947 8.2396 2.9996 20 1 1.7083 9.6881 2.6925 21 1 0.1732 7.8218 2.8990 22 1 2.0889 7.9857 4.3767 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6036 1.9822 0.8405 29 1 1.7535 1.9292 -0.9323 30 1 3.8801 1.2001 -1.9889 31 1 3.8284 -0.3254 -1.0726 32 1 6.1464 0.2423 -1.8101 33 1 6.0042 0.2018 -0.0352 34 1 5.9154 2.6982 -1.7917 35 1 7.2636 2.2033 -0.7390 36 1 5.8371 3.9155 0.3624 37 1 5.7879 2.3681 1.2405 38 1 3.8470 3.4015 2.1636 39 1 2.3257 3.3257 1.2427 40 1 5.2519 5.3632 1.8575 41 1 3.8246 7.3788 0.2062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332872789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:17 Heat of formation + Delta-G solvation = -97.652996 kcal Electronic energy + Delta-G solvation = -18566.999059 eV Core-core repulsion = 15865.657681 eV Total energy + Delta-G solvation = -2701.341377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57974 -37.98585 -35.85461 -34.40806 -34.16531 -31.68672 -30.04191 -27.52739 -26.34330 -24.45034 -23.39897 -22.39060 -21.47161 -20.62492 -19.34810 -17.18411 -16.65882 -16.45974 -16.23945 -15.75589 -15.41855 -15.21283 -14.83694 -14.58311 -14.32488 -14.20373 -13.84253 -13.56013 -13.29866 -12.91042 -12.69224 -12.50760 -12.33128 -12.17594 -12.00489 -11.93598 -11.86380 -11.66382 -11.55934 -11.27573 -11.00705 -10.91088 -10.62219 -9.98390 -9.10698 -8.60393 -6.45704 1.52427 1.60226 1.79853 2.55455 2.99800 3.17183 3.76159 3.83668 3.96784 3.99168 4.10847 4.21147 4.28966 4.31679 4.35775 4.37684 4.57566 4.61987 4.69948 4.76229 4.83271 4.93540 4.97236 5.01767 5.05731 5.10341 5.14218 5.19916 5.24282 5.34329 5.38084 5.44369 5.46901 5.56367 5.81888 6.11062 6.29428 6.39488 6.57084 7.16391 7.50926 8.76612 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.006962 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.912480 B = 4020.796680 C = 5071.661392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.116 4.116 4 C 0.082 3.918 5 H 0.029 0.971 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.112 4.112 9 C 0.043 3.957 10 N -0.541 5.541 11 C 0.051 3.949 12 C 0.225 3.775 13 H 0.017 0.983 14 O -0.582 6.582 15 C -0.660 4.660 16 H 0.049 0.951 17 C -0.017 4.017 18 N -0.920 5.920 19 Si 1.115 2.885 20 H -0.285 1.285 21 H -0.271 1.271 22 H -0.269 1.269 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.075 0.925 40 H 0.358 0.642 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -17.210 -1.214 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.154 4.154 4 C -0.026 4.026 5 H 0.047 0.953 6 C -0.143 4.143 7 C -0.153 4.153 8 C -0.150 4.150 9 C -0.084 4.084 10 N -0.266 5.266 11 C -0.077 4.077 12 C 0.168 3.832 13 H 0.035 0.965 14 O -0.387 6.387 15 C -0.698 4.698 16 H 0.067 0.933 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.937 3.063 20 H -0.211 1.211 21 H -0.196 1.196 22 H -0.194 1.194 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.203 0.797 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.194 -15.348 -1.903 15.467 hybrid contribution 0.719 -1.600 0.880 1.963 sum 0.526 -16.948 -1.022 16.987 Atomic orbital electron populations 1.21774 0.95412 1.02213 1.01529 1.21502 0.96190 0.94879 1.02613 1.21767 0.94055 0.98087 1.01472 1.21745 0.95035 0.88096 0.97713 0.95274 1.21646 0.95404 1.00159 0.97104 1.21580 0.95575 0.95772 1.02391 1.21561 0.99620 0.96150 0.97655 1.22415 0.87162 1.02103 0.96755 1.61939 1.05465 1.11925 1.47277 1.22629 0.98826 0.94977 0.91284 1.19323 0.79525 0.89539 0.94830 0.96488 1.86425 1.28515 1.88245 1.35510 1.22827 1.33841 0.95114 1.18030 0.93307 1.27297 0.97412 0.97251 0.99904 1.70773 1.28341 1.40132 1.16333 0.82983 0.75057 0.74587 0.73719 1.21052 1.19579 1.19424 0.93544 0.92992 0.91169 0.90493 0.91786 0.93247 0.92604 0.92311 0.89369 0.90103 0.91963 0.92745 0.90527 0.90000 0.96185 0.96321 0.90668 0.79663 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.28 16 2 C -0.11 -2.40 5.45 30.60 0.17 -2.23 16 3 C -0.12 -3.32 4.44 30.60 0.14 -3.18 16 4 C 0.08 2.44 1.96 44.94 0.09 2.53 16 5 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.11 -2.55 5.02 30.65 0.15 -2.39 16 7 C -0.12 -2.61 6.00 30.67 0.18 -2.42 16 8 C -0.11 -3.12 6.09 30.65 0.19 -2.93 16 9 C 0.04 1.49 5.21 86.33 0.45 1.94 16 10 N -0.54 -20.17 4.41 -871.12 -3.85 -24.01 16 11 C 0.05 2.18 4.58 86.30 0.40 2.58 16 12 C 0.23 11.83 2.64 29.85 0.08 11.91 16 13 H 0.02 1.03 8.01 -2.38 -0.02 1.01 16 14 O -0.58 -29.86 9.16 -148.98 -1.36 -31.22 16 15 C -0.66 -37.47 8.76 25.60 0.22 -37.24 16 16 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 17 C -0.02 -0.96 5.40 84.66 0.46 -0.50 16 18 N -0.92 -57.94 13.53 21.45 0.29 -57.65 16 19 Si 1.12 50.34 29.90 68.60 2.05 52.39 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.41 6.75 -2.39 -0.02 1.39 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.59 5.86 -2.39 -0.01 1.58 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.09 1.68 6.62 -2.39 -0.02 1.66 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 3.27 5.24 -2.39 -0.01 3.26 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.02 0.80 7.99 -2.39 -0.02 0.78 16 39 H 0.08 3.23 5.21 -2.39 -0.01 3.22 16 40 H 0.36 16.58 9.02 -74.06 -0.67 15.91 16 41 H 0.27 17.45 6.47 -92.70 -0.60 16.85 16 Total: -1.00 -65.31 310.40 0.85 -64.46 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.49 Total: 30.26 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.23 Total: -34.23 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.56 Total: -81.66 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.36 Total: -31.22 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Total: -65.31 0.85 -64.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332872789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.195 kcal (2) G-P(sol) polarization free energy of solvation -65.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds