Wall clock time and date at job start Sun Mar 29 2020 22:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46951 * 2 1 4 4 C 1.53001 * 109.46859 * 185.29159 * 3 2 1 5 5 H 1.09004 * 109.45501 * 58.30641 * 4 3 2 6 6 C 1.53032 * 109.46634 * 298.32906 * 4 3 2 7 7 C 1.53120 * 109.27886 * 180.80565 * 6 4 3 8 8 C 1.53120 * 109.16050 * 57.65366 * 7 6 4 9 9 C 1.53034 * 109.27969 * 302.34492 * 8 7 6 10 10 N 1.46852 * 109.52297 * 59.18113 * 9 8 7 11 11 C 1.46896 * 111.00047 * 174.16000 * 10 9 8 12 12 C 1.52998 * 109.47377 * 289.88523 * 11 10 9 13 13 H 1.09008 * 109.46808 * 59.99904 * 12 11 10 14 14 O 1.42898 * 109.46991 * 300.00290 * 12 11 10 15 15 C 1.50697 * 109.47354 * 179.97438 * 12 11 10 16 16 H 1.08003 * 119.99748 * 0.02562 * 15 12 11 17 17 C 1.37874 * 119.99865 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00402 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99711 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.46965 * 90.00620 * 19 17 15 21 21 H 1.48498 * 109.46809 * 210.00287 * 19 17 15 22 22 H 1.48499 * 109.47078 * 330.00560 * 19 17 15 23 23 H 1.08999 * 109.47601 * 60.00183 * 1 2 3 24 24 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47277 * 299.99765 * 1 2 3 26 26 H 1.08991 * 109.47432 * 239.99807 * 2 1 3 27 27 H 1.09001 * 109.46866 * 119.99763 * 2 1 3 28 28 H 1.09002 * 109.46904 * 65.29315 * 3 2 1 29 29 H 1.09002 * 109.47255 * 305.29115 * 3 2 1 30 30 H 1.09003 * 109.50072 * 300.74759 * 6 4 3 31 31 H 1.08996 * 109.50596 * 60.82214 * 6 4 3 32 32 H 1.09004 * 109.52116 * 177.56008 * 7 6 4 33 33 H 1.08995 * 109.52091 * 297.68395 * 7 6 4 34 34 H 1.09004 * 109.50091 * 62.28472 * 8 7 6 35 35 H 1.08999 * 109.50046 * 182.36018 * 8 7 6 36 36 H 1.08993 * 109.46383 * 299.16479 * 9 8 7 37 37 H 1.08994 * 109.46334 * 179.19309 * 9 8 7 38 38 H 1.09003 * 109.47321 * 169.88207 * 11 10 9 39 39 H 1.09001 * 109.46808 * 49.89055 * 11 10 9 40 40 H 0.96696 * 114.00066 * 299.99476 * 14 12 11 41 41 H 0.97004 * 120.00045 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5642 1.4445 -0.1330 5 1 3.8491 0.9322 -1.0520 6 6 4.1817 0.7218 1.0662 7 6 5.7075 0.7439 0.9390 8 6 6.1833 2.1965 0.8489 9 6 5.5077 2.8765 -0.3440 10 7 4.0498 2.8298 -0.1746 11 6 3.3723 3.5938 -1.2306 12 6 3.6260 5.0881 -1.0219 13 1 4.6976 5.2838 -1.0623 14 8 3.1173 5.4839 0.2534 15 6 2.9315 5.8717 -2.1057 16 1 2.3654 5.3556 -2.8670 17 6 3.0180 7.2476 -2.1247 18 7 3.7069 7.8762 -1.1973 19 14 2.1565 8.2191 -3.4677 20 1 0.7800 8.5598 -3.0268 21 1 2.9130 9.4680 -3.7380 22 1 2.0917 7.4017 -4.7059 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7561 1.9282 0.9336 29 1 1.6013 1.9830 -0.8388 30 1 3.8859 1.2256 1.9865 31 1 3.8327 -0.3105 1.0882 32 1 6.1528 0.2682 1.8128 33 1 6.0058 0.2055 0.0394 34 1 5.9190 2.7235 1.7658 35 1 7.2649 2.2175 0.7161 36 1 5.7835 2.3575 -1.2619 37 1 5.8334 3.9150 -0.4024 38 1 2.3008 3.3980 -1.1903 39 1 3.7604 3.2917 -2.2034 40 1 2.1674 5.3382 0.3605 41 1 3.7680 8.8442 -1.2110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332872791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:19 Heat of formation + Delta-G solvation = -71.967319 kcal Electronic energy + Delta-G solvation = -18510.118831 eV Core-core repulsion = 15809.891268 eV Total energy + Delta-G solvation = -2700.227563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.12607 -35.64305 -34.74818 -32.75980 -32.00358 -30.60717 -28.11593 -26.35340 -24.91309 -23.21369 -22.00932 -20.43041 -20.10882 -19.25579 -16.94834 -15.27729 -15.15305 -14.93815 -14.57003 -14.25119 -14.09754 -13.64100 -13.42779 -13.05453 -13.02316 -12.61509 -12.35885 -12.10453 -11.75734 -11.24779 -11.14628 -11.06806 -10.89974 -10.79012 -10.76569 -10.68599 -10.47988 -10.30533 -10.05456 -9.87205 -9.61547 -8.88052 -8.51923 -8.03012 -7.49108 -5.95947 -4.14124 3.29558 3.36505 3.38987 4.33133 4.49469 4.97188 4.99811 5.15547 5.17358 5.27301 5.31960 5.33321 5.47202 5.67167 5.77857 5.81152 5.85186 5.93687 5.96907 5.99149 6.09839 6.15115 6.16594 6.24182 6.28446 6.30523 6.39904 6.53006 6.53741 6.56816 6.60080 6.77402 6.93770 7.67828 7.77203 7.85210 7.98012 8.26760 8.90292 9.51993 9.69198 11.08070 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.006732 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.287260 B = 4158.361636 C = 5029.435925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.085 3.915 5 H 0.027 0.973 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.058 3.942 10 N -0.521 5.521 11 C 0.025 3.975 12 C 0.239 3.761 13 H 0.052 0.948 14 O -0.553 6.553 15 C -0.573 4.573 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.022 0.978 40 H 0.341 0.659 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -14.776 3.126 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.024 4.024 5 H 0.045 0.955 6 C -0.148 4.148 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.070 4.070 10 N -0.245 5.245 11 C -0.102 4.102 12 C 0.181 3.819 13 H 0.070 0.930 14 O -0.354 6.354 15 C -0.612 4.612 16 H 0.071 0.929 17 C -0.126 4.126 18 N -0.494 5.494 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.040 0.960 40 H 0.183 0.817 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.017 -14.217 3.738 14.700 hybrid contribution -0.805 0.069 -1.822 1.993 sum -0.788 -14.148 1.916 14.299 Atomic orbital electron populations 1.21768 0.96071 1.01047 1.01995 1.21552 0.95626 0.97304 1.01541 1.21774 0.94523 0.96010 1.03186 1.21591 0.94494 0.89866 0.96405 0.95464 1.21645 0.94863 0.99236 0.99011 1.21573 0.96188 0.97073 1.00867 1.21572 0.98701 0.95278 0.99761 1.22049 0.88264 1.01208 0.95512 1.61938 1.04113 1.10220 1.48238 1.23191 0.98302 0.98299 0.90458 1.19279 0.95356 0.84981 0.82292 0.93045 1.86561 1.24764 1.87560 1.36520 1.21678 1.34735 0.92064 1.12717 0.92862 1.25016 0.94535 0.97876 0.95176 1.70086 1.38755 1.08305 1.32292 0.86707 0.79790 0.79640 0.82421 1.20528 1.21141 1.19938 0.92761 0.93220 0.92687 0.92568 0.92051 0.91032 0.91318 0.91200 0.92183 0.92442 0.92852 0.91038 0.92277 0.96169 0.89967 0.91149 0.95963 0.81667 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.39 5.47 -26.73 -0.15 -1.54 16 3 C -0.12 -1.66 4.41 -26.73 -0.12 -1.78 16 4 C 0.09 1.30 1.95 -67.72 -0.13 1.17 16 5 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 6 C -0.11 -1.45 5.04 -26.65 -0.13 -1.58 16 7 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 8 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 9 C 0.06 1.02 5.30 -3.83 -0.02 1.00 16 10 N -0.52 -9.64 4.33 -226.69 -0.98 -10.62 16 11 C 0.02 0.52 4.35 -3.83 -0.02 0.50 16 12 C 0.24 6.14 2.79 -27.89 -0.08 6.06 16 13 H 0.05 1.46 6.58 -51.92 -0.34 1.12 16 14 O -0.55 -14.62 12.60 -35.23 -0.44 -15.06 16 15 C -0.57 -15.91 8.76 -34.44 -0.30 -16.21 16 16 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 18 N -0.86 -25.70 12.84 55.43 0.71 -24.99 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.65 6.77 -51.93 -0.35 0.30 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.06 5.93 -51.93 -0.31 0.75 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.68 6.64 -51.93 -0.34 0.34 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 1.65 6.41 -51.93 -0.33 1.31 16 38 H 0.07 1.43 5.42 -51.93 -0.28 1.15 16 39 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 40 H 0.34 8.14 9.04 45.56 0.41 8.56 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -29.94 314.73 -8.57 -38.51 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.58 Total: 6.05 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.00 Total: -14.95 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.27 Total: -35.61 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.44 Total: -15.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.94 -8.57 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332872791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.460 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds