Wall clock time and date at job start Sun Mar 29 2020 22:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47232 * 2 1 4 4 H 1.08997 * 109.47710 * 305.00648 * 3 2 1 5 5 C 1.53007 * 109.46741 * 65.00277 * 3 2 1 6 6 C 1.52997 * 109.47091 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47179 * 300.00345 * 6 5 3 8 8 C 1.52997 * 109.47436 * 59.99808 * 7 6 5 9 9 C 1.52993 * 109.47184 * 185.00056 * 3 2 1 10 10 H 1.08997 * 109.47132 * 60.00819 * 9 3 2 11 11 N 1.46900 * 109.47556 * 300.00513 * 9 3 2 12 12 C 1.46894 * 111.00559 * 154.99999 * 11 9 3 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 15 15 O 1.42896 * 109.46906 * 300.00045 * 13 12 11 16 16 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 13 12 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 13 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 H 1.09002 * 109.46998 * 299.99047 * 1 2 3 25 25 H 1.08995 * 109.47606 * 59.99778 * 1 2 3 26 26 H 1.08998 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46664 * 240.00523 * 2 1 3 28 28 H 1.08998 * 109.47201 * 120.00522 * 2 1 3 29 29 H 1.08999 * 109.47229 * 60.00327 * 5 3 2 30 30 H 1.09000 * 109.47246 * 300.00184 * 5 3 2 31 31 H 1.08997 * 109.47283 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47224 * 59.99880 * 6 5 3 33 33 H 1.09002 * 109.46663 * 299.99879 * 7 6 5 34 34 H 1.09001 * 109.47156 * 180.02562 * 7 6 5 35 35 H 1.08994 * 109.47396 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47181 * 59.99833 * 8 7 6 37 37 H 1.00905 * 110.99607 * 278.95497 * 11 9 3 38 38 H 1.09002 * 109.47104 * 59.99767 * 12 11 9 39 39 H 1.08998 * 109.46828 * 300.00600 * 12 11 9 40 40 H 0.96708 * 114.00101 * 299.99268 * 15 13 12 41 41 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1264 1.3075 6 6 2.1458 3.5687 1.3078 7 6 3.6707 3.5700 1.1823 8 6 4.0754 2.8860 -0.1251 9 6 3.5648 1.4442 -0.1257 10 1 3.8531 0.9571 -1.0572 11 7 4.1506 0.7177 1.0087 12 6 5.4747 0.1830 0.6643 13 6 6.0512 -0.5658 1.8675 14 1 5.3867 -1.3868 2.1370 15 8 6.1726 0.3312 2.9732 16 6 7.4093 -1.1149 1.5139 17 1 7.8204 -0.9463 0.5295 18 6 8.1275 -1.8317 2.4474 19 7 9.3130 -2.3104 2.1389 20 14 7.4168 -2.1228 4.1502 21 1 6.6329 -3.3841 4.1504 22 1 8.5219 -2.2267 5.1366 23 1 6.5306 -0.9891 4.5171 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.0700 1.5874 2.1492 30 1 0.5490 2.1251 1.3971 31 1 1.8579 4.0558 2.2394 32 1 1.7116 4.1081 0.4660 33 1 4.1049 3.0306 2.0241 34 1 4.0344 4.5975 1.1830 35 1 5.1617 2.8866 -0.2143 36 1 3.6411 3.4253 -0.9669 37 1 4.1997 1.3050 1.8277 38 1 6.1391 1.0039 0.3943 39 1 5.3820 -0.5015 -0.1789 40 1 6.7509 1.0877 2.8042 41 1 9.8181 -2.8150 2.7955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332919779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:17 Heat of formation + Delta-G solvation = -80.492706 kcal Electronic energy + Delta-G solvation = -18547.162324 eV Core-core repulsion = 15846.565073 eV Total energy + Delta-G solvation = -2700.597251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.49291 -36.42687 -33.95829 -33.35808 -32.22459 -29.81840 -28.93515 -27.46530 -24.00637 -23.70914 -22.15170 -20.69831 -20.24183 -18.75494 -17.25213 -15.94958 -15.23019 -14.78020 -14.67136 -14.53315 -13.92064 -13.81405 -13.70855 -13.26893 -13.03714 -12.56942 -12.49386 -12.07444 -11.80936 -11.58241 -11.42188 -11.29523 -11.22826 -10.92275 -10.81161 -10.51205 -10.34233 -10.26264 -10.04593 -9.85767 -9.75339 -9.00575 -8.60546 -8.25426 -7.76416 -6.10659 -4.21600 3.42346 3.51124 3.77896 4.56454 4.64753 4.75543 4.85552 4.95782 5.21232 5.23836 5.24792 5.36518 5.44948 5.57803 5.57862 5.66260 5.74922 5.80595 5.83456 5.89757 6.01035 6.04841 6.10549 6.16867 6.19875 6.24036 6.26631 6.33687 6.42204 6.46203 6.58617 6.71103 6.78753 7.35341 7.53998 7.73756 8.02557 8.31021 8.85218 9.03697 9.54559 11.00070 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028961 B = 0.006228 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.593079 B = 4494.563659 C = 4749.236127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.070 4.070 4 H 0.060 0.940 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.149 4.149 9 C 0.089 3.911 10 H 0.071 0.929 11 N -0.680 5.680 12 C 0.045 3.955 13 C 0.196 3.804 14 H 0.062 0.938 15 O -0.582 6.582 16 C -0.564 4.564 17 H 0.070 0.930 18 C 0.082 3.918 19 N -0.895 5.895 20 Si 0.874 3.126 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.217 1.217 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.343 0.657 38 H 0.021 0.979 39 H 0.067 0.933 40 H 0.351 0.649 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.319 10.470 -3.246 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.089 4.089 4 H 0.079 0.921 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.188 4.188 9 C -0.022 4.022 10 H 0.089 0.911 11 N -0.313 5.313 12 C -0.084 4.084 13 C 0.139 3.861 14 H 0.080 0.920 15 O -0.387 6.387 16 C -0.601 4.601 17 H 0.088 0.912 18 C -0.122 4.122 19 N -0.532 5.532 20 Si 0.700 3.300 21 H -0.214 1.214 22 H -0.224 1.224 23 H -0.139 1.139 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.164 0.836 38 H 0.039 0.961 39 H 0.085 0.915 40 H 0.197 0.803 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.912 9.351 -3.051 18.707 hybrid contribution 0.903 0.874 0.336 1.301 sum -15.010 10.225 -2.715 18.363 Atomic orbital electron populations 1.21851 0.97042 1.01007 1.01118 1.21432 0.94113 0.96357 1.02999 1.21105 0.94544 0.96057 0.97213 0.92130 1.21608 0.99965 0.95058 0.98647 1.21525 0.95648 0.97267 1.01058 1.21526 0.96059 1.00131 0.98174 1.22177 1.00943 0.97850 0.97867 1.21554 0.94105 0.91386 0.95108 0.91078 1.60645 1.24544 1.40305 1.05813 1.22602 0.87533 0.97825 1.00433 1.19815 0.95471 0.88354 0.82485 0.92048 1.86696 1.70793 1.38901 1.42317 1.21519 1.01563 1.35721 1.01341 0.91176 1.25006 0.94252 0.93510 0.99398 1.69966 1.12216 1.35360 1.35652 0.86986 0.79637 0.79894 0.83450 1.21432 1.22441 1.13927 0.92848 0.93541 0.93267 0.92701 0.90332 0.90985 0.92423 0.92438 0.92578 0.91500 0.92418 0.92065 0.92156 0.83553 0.96068 0.91453 0.80310 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 37.16 0.36 -1.24 16 2 C -0.11 -1.39 5.17 -26.73 -0.14 -1.52 16 3 C -0.07 -0.84 2.01 -90.62 -0.18 -1.02 16 4 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.12 -1.31 4.72 -26.73 -0.13 -1.44 16 6 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 7 C -0.12 -1.40 5.67 -26.73 -0.15 -1.56 16 8 C -0.15 -1.85 5.52 -26.76 -0.15 -2.00 16 9 C 0.09 1.22 2.30 -67.74 -0.16 1.06 16 10 H 0.07 1.02 7.80 -51.93 -0.40 0.62 16 11 N -0.68 -11.04 5.10 -106.76 -0.54 -11.58 16 12 C 0.05 0.87 5.13 -3.83 -0.02 0.86 16 13 C 0.20 4.55 2.58 -27.88 -0.07 4.48 16 14 H 0.06 1.52 7.57 -51.93 -0.39 1.12 16 15 O -0.58 -12.87 9.48 -35.23 -0.33 -13.21 16 16 C -0.56 -15.69 9.34 -34.44 -0.32 -16.01 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 19 N -0.89 -27.51 13.96 55.43 0.77 -26.74 16 20 Si 0.87 22.09 26.99 -169.99 -4.59 17.50 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.22 -5.34 5.30 56.52 0.30 -5.04 16 24 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.13 7.76 -51.93 -0.40 0.73 16 29 H 0.07 0.94 7.21 -51.93 -0.37 0.57 16 30 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.86 6.26 -51.93 -0.32 0.53 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.34 5.60 4.95 -39.29 -0.19 5.41 16 38 H 0.02 0.41 7.43 -51.93 -0.39 0.03 16 39 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 40 H 0.35 6.93 9.04 45.56 0.41 7.35 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -29.59 306.62 -7.88 -37.47 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.59 Total: 9.43 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.21 Total: -17.49 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.23 Total: -38.32 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.33 Total: -13.21 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.59 Total: 17.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.59 -7.88 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332919779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.027 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds