Wall clock time and date at job start Sun Mar 29 2020 22:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47279 * 2 1 4 4 H 1.09002 * 109.47103 * 304.99792 * 3 2 1 5 5 C 1.52997 * 109.47482 * 65.00040 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 C 1.52999 * 109.46961 * 185.00400 * 3 2 1 10 10 H 1.09002 * 109.46716 * 299.99630 * 9 3 2 11 11 N 1.46898 * 109.47548 * 59.99531 * 9 3 2 12 12 C 1.46901 * 111.00188 * 204.99995 * 11 9 3 13 13 C 1.53003 * 109.47032 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.46805 * 60.00733 * 13 12 11 15 15 O 1.42892 * 109.47377 * 300.00486 * 13 12 11 16 16 C 1.50696 * 109.47020 * 180.02562 * 13 12 11 17 17 H 1.08009 * 120.00268 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00257 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99575 * 359.97438 * 18 16 13 20 20 Si 1.86801 * 120.00247 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46967 * 59.99677 * 20 18 16 22 22 H 1.48494 * 109.46906 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46912 * 299.99883 * 20 18 16 24 24 H 1.09000 * 109.47104 * 59.99686 * 1 2 3 25 25 H 1.08993 * 109.47832 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46924 * 300.00271 * 1 2 3 27 27 H 1.08996 * 109.46511 * 239.99535 * 2 1 3 28 28 H 1.09001 * 109.46580 * 120.00304 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 31 31 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 35 35 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 36 36 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 37 37 H 1.00897 * 110.99635 * 328.95767 * 11 9 3 38 38 H 1.08997 * 109.47146 * 300.00477 * 12 11 9 39 39 H 1.09006 * 109.46899 * 60.00327 * 12 11 9 40 40 H 0.96703 * 114.00004 * 299.99504 * 15 13 12 41 41 H 0.96994 * 119.99623 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1449 3.5692 1.3069 7 6 3.6697 3.5715 1.1809 8 6 4.0744 2.8874 -0.1264 9 6 3.5648 1.4442 -0.1258 10 1 3.9994 0.9051 0.7160 11 7 3.9534 0.7873 -1.3810 12 6 5.3135 0.2398 -1.2896 13 6 5.6815 -0.4353 -2.6124 14 1 5.6382 0.2971 -3.4184 15 8 4.7591 -1.4933 -2.8800 16 6 7.0765 -0.9975 -2.5183 17 1 7.6441 -0.8842 -1.6064 18 6 7.6287 -1.6556 -3.5968 19 7 6.9378 -1.7931 -4.7073 20 14 9.3577 -2.3531 -3.4800 21 1 9.4155 -3.3516 -2.3823 22 1 9.7149 -3.0083 -4.7638 23 1 10.3169 -1.2544 -3.2007 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 2.0699 1.5875 2.1491 30 1 0.5490 2.1253 1.3968 31 1 1.7100 4.1079 0.4652 32 1 1.8569 4.0564 2.2385 33 1 4.0328 4.5992 1.1811 34 1 4.1046 3.0326 2.0227 35 1 3.6394 3.4262 -0.9682 36 1 5.1607 2.8886 -0.2160 37 1 3.2909 0.0695 -1.6336 38 1 6.0171 1.0468 -1.0850 39 1 5.3568 -0.4929 -0.4837 40 1 4.7441 -2.1829 -2.2022 41 1 7.3261 -2.2564 -5.4658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332919783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:19 Heat of formation + Delta-G solvation = -107.244650 kcal Electronic energy + Delta-G solvation = -18206.778034 eV Core-core repulsion = 15505.020731 eV Total energy + Delta-G solvation = -2701.757303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37330 -38.05103 -35.24120 -34.82894 -34.24418 -31.00513 -30.03287 -28.67750 -25.91832 -24.85687 -22.73629 -22.09562 -21.50751 -20.59642 -19.01905 -17.24354 -16.66528 -16.28081 -16.14713 -15.77784 -15.41489 -15.17115 -14.87680 -14.54886 -14.26627 -13.99778 -13.51452 -13.26269 -13.17830 -12.90506 -12.74749 -12.74229 -12.43202 -12.29119 -12.19930 -12.08805 -11.86265 -11.60912 -11.33226 -11.12308 -10.91036 -10.79829 -10.70628 -10.14572 -9.20476 -8.14220 -6.40853 1.39864 1.41933 1.50250 2.38110 3.11167 3.31264 3.73808 3.80956 3.96491 4.19233 4.26443 4.34155 4.38710 4.42638 4.49311 4.53713 4.57106 4.62548 4.69013 4.78689 4.86943 4.93752 5.04055 5.09037 5.14618 5.18883 5.26118 5.31869 5.34875 5.39842 5.42140 5.49921 5.60241 5.61892 5.74537 6.03260 6.29897 6.62065 6.74128 7.31717 7.52397 8.90346 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033148 B = 0.005296 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.485893 B = 5285.304183 C = 5867.108083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.081 4.081 4 H 0.068 0.932 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.107 4.107 9 C 0.091 3.909 10 H 0.029 0.971 11 N -0.693 5.693 12 C 0.059 3.941 13 C 0.234 3.766 14 H 0.020 0.980 15 O -0.576 6.576 16 C -0.590 4.590 17 H 0.058 0.942 18 C 0.026 3.974 19 N -0.899 5.899 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.269 1.269 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.343 0.657 38 H 0.058 0.942 39 H 0.018 0.982 40 H 0.353 0.647 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 7.398 13.697 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.100 4.100 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.145 4.145 9 C -0.018 4.018 10 H 0.047 0.953 11 N -0.327 5.327 12 C -0.071 4.071 13 C 0.176 3.824 14 H 0.038 0.962 15 O -0.380 6.380 16 C -0.628 4.628 17 H 0.076 0.924 18 C -0.176 4.176 19 N -0.536 5.536 20 Si 0.786 3.214 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.194 1.194 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.164 0.836 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.197 0.803 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.862 8.278 12.665 18.625 hybrid contribution 1.219 -1.554 0.532 2.045 sum -9.643 6.724 13.196 17.673 Atomic orbital electron populations 1.21748 0.94198 1.01956 1.02325 1.21621 0.97423 0.96174 1.01160 1.21266 0.93129 0.96308 0.99268 0.91355 1.21589 1.01455 0.95613 0.95871 1.21537 0.94798 0.96614 1.02403 1.21516 0.96854 1.00485 0.96347 1.21524 0.99587 0.94950 0.98429 1.21613 0.95564 0.95036 0.89609 0.95259 1.60505 1.03518 1.35693 1.33000 1.22418 0.90290 0.96782 0.97582 1.19204 0.86753 0.85234 0.91193 0.96182 1.86517 1.63795 1.36150 1.51523 1.21997 1.01814 1.39037 0.99972 0.92387 1.25921 1.01535 0.95607 0.94586 1.70220 1.38526 1.41094 1.03766 0.85584 0.79509 0.78759 0.77545 1.19128 1.20860 1.19356 0.92851 0.92530 0.91225 0.93395 0.92228 0.92053 0.90141 0.91988 0.90375 0.91097 0.92182 0.92353 0.93948 0.83565 0.92346 0.96349 0.80310 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.67 71.98 0.70 -2.02 16 2 C -0.13 -2.95 5.27 30.59 0.16 -2.78 16 3 C -0.08 -1.93 1.85 -10.80 -0.02 -1.95 16 4 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.11 -1.98 4.96 30.59 0.15 -1.83 16 6 C -0.12 -2.03 5.92 30.60 0.18 -1.85 16 7 C -0.11 -2.37 5.92 30.59 0.18 -2.18 16 8 C -0.11 -2.97 5.43 30.61 0.17 -2.80 16 9 C 0.09 2.71 1.97 44.93 0.09 2.79 16 10 H 0.03 0.91 7.80 -2.39 -0.02 0.89 16 11 N -0.69 -25.90 6.31 -491.47 -3.10 -29.00 16 12 C 0.06 2.53 5.13 86.30 0.44 2.98 16 13 C 0.23 12.42 3.10 29.85 0.09 12.52 16 14 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 15 O -0.58 -30.36 12.07 -148.98 -1.80 -32.16 16 16 C -0.59 -33.26 8.76 25.60 0.22 -33.03 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 18 C 0.03 1.49 5.40 84.65 0.46 1.94 16 19 N -0.90 -54.87 12.84 21.45 0.28 -54.59 16 20 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.08 6.56 -2.39 -0.02 1.06 16 27 H 0.05 1.33 6.03 -2.39 -0.01 1.31 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.23 6.56 -2.39 -0.02 1.22 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.31 7.46 -2.39 -0.02 1.29 16 37 H 0.34 12.90 5.49 -89.70 -0.49 12.41 16 38 H 0.06 2.54 7.44 -2.39 -0.02 2.53 16 39 H 0.02 0.77 8.06 -2.38 -0.02 0.75 16 40 H 0.35 16.37 9.04 -74.06 -0.67 15.70 16 41 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -63.85 315.50 0.06 -63.79 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.17 Total: 34.25 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 2.82 Total: -28.22 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.83 Total: -83.60 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.80 Total: -32.16 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.85 0.06 -63.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332919783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.457 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds