Wall clock time and date at job start Sun Mar 29 2020 22:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 H 1.08998 * 109.46862 * 55.00856 * 3 2 1 5 5 C 1.52997 * 109.47482 * 295.00291 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 3 8 8 C 1.53002 * 109.46891 * 299.99597 * 7 6 5 9 9 C 1.52997 * 109.46978 * 60.00410 * 8 7 6 10 10 H 1.09000 * 109.47140 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.47489 * 59.99517 * 9 8 7 12 12 C 1.46901 * 110.99480 * 85.00020 * 11 9 8 13 13 C 1.53000 * 109.46938 * 180.02562 * 12 11 9 14 14 H 1.09001 * 109.47352 * 60.00025 * 13 12 11 15 15 O 1.42904 * 109.47338 * 300.00058 * 13 12 11 16 16 C 1.50699 * 109.47389 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99938 * 0.02562 * 16 13 12 18 18 C 1.37879 * 120.00261 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99668 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00131 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47361 * 89.99725 * 20 18 16 22 22 H 1.48499 * 109.47314 * 209.99702 * 20 18 16 23 23 H 1.48499 * 109.47154 * 330.00094 * 20 18 16 24 24 H 1.08998 * 109.46891 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46593 * 299.99796 * 1 2 3 27 27 H 1.09002 * 109.47097 * 240.00184 * 2 1 3 28 28 H 1.09006 * 109.47311 * 120.00941 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 30 30 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 33 33 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 34 34 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47097 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47142 * 300.00176 * 8 7 6 37 37 H 1.00893 * 110.99570 * 321.04943 * 11 9 8 38 38 H 1.09000 * 109.47740 * 299.99755 * 12 11 9 39 39 H 1.08997 * 109.47681 * 60.00508 * 12 11 9 40 40 H 0.96695 * 113.99849 * 300.00265 * 15 13 12 41 41 H 0.97007 * 119.99843 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.1459 3.5688 -1.3074 7 6 3.6707 3.5700 -1.1821 8 6 4.0755 2.8860 0.1253 9 6 3.5649 1.4437 0.1254 10 1 3.8537 0.9562 1.0566 11 7 4.1501 0.7169 -1.0092 12 6 5.4741 0.1816 -0.6650 13 6 6.0505 -0.5664 -1.8688 14 1 6.1434 0.1185 -2.7117 15 8 5.1792 -1.6422 -2.2230 16 6 7.4090 -1.1149 -1.5160 17 1 7.8201 -0.9472 -0.5314 18 6 8.1273 -1.8309 -2.4500 19 7 7.6265 -2.0356 -3.6488 20 14 9.8109 -2.5115 -2.0124 21 1 9.6614 -3.8763 -1.4466 22 1 10.6533 -2.5717 -3.2339 23 1 10.4565 -1.6277 -1.0089 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 0.5489 2.1253 -1.3968 30 1 2.0699 1.5875 -2.1491 31 1 1.8571 4.0563 -2.2386 32 1 1.7117 4.1081 -0.4656 33 1 4.1050 3.0308 -2.0239 34 1 4.0345 4.5976 -1.1827 35 1 5.1618 2.8872 0.2148 36 1 3.6412 3.4252 0.9671 37 1 4.1992 1.3042 -1.8281 38 1 6.1390 1.0022 -0.3953 39 1 5.3814 -0.5029 0.1781 40 1 5.0499 -2.2919 -1.5185 41 1 8.1317 -2.5396 -4.3059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332919785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:21 Heat of formation + Delta-G solvation = -102.847076 kcal Electronic energy + Delta-G solvation = -18450.248178 eV Core-core repulsion = 15748.681569 eV Total energy + Delta-G solvation = -2701.566610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53017 -37.83718 -35.08385 -34.50350 -34.17350 -31.02158 -29.94537 -28.77001 -25.84340 -24.62637 -23.14364 -22.50265 -21.37083 -19.85432 -18.86606 -17.21701 -16.66314 -16.33106 -15.99943 -15.73575 -15.35637 -15.15828 -14.71220 -14.42300 -14.22729 -14.02578 -13.49318 -13.18358 -13.06436 -12.90145 -12.80469 -12.68189 -12.47971 -12.23915 -12.19906 -11.99512 -11.84066 -11.43498 -11.25523 -11.02837 -10.90172 -10.73380 -10.71587 -10.02536 -9.02462 -8.12964 -6.39036 1.40184 1.40425 1.51401 2.38694 3.12897 3.44022 3.78823 3.90710 3.94360 4.27483 4.30872 4.34658 4.45006 4.47284 4.54893 4.58377 4.66824 4.71565 4.72805 4.86793 4.90754 4.96954 5.03882 5.12852 5.15288 5.23962 5.27392 5.32807 5.40531 5.46448 5.53752 5.61446 5.65155 5.75997 5.80697 6.07597 6.33386 6.62096 6.76112 7.35234 7.63131 8.91464 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031699 B = 0.005681 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.084942 B = 4927.643493 C = 5311.358983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.063 4.063 4 H 0.079 0.921 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.121 4.121 8 C -0.145 4.145 9 C 0.087 3.913 10 H 0.064 0.936 11 N -0.671 5.671 12 C 0.057 3.943 13 C 0.236 3.764 14 H 0.014 0.986 15 O -0.569 6.569 16 C -0.588 4.588 17 H 0.057 0.943 18 C 0.025 3.975 19 N -0.900 5.900 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.266 1.266 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.333 0.667 38 H 0.017 0.983 39 H 0.059 0.941 40 H 0.352 0.648 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 9.694 8.347 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.082 4.082 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.159 4.159 8 C -0.184 4.184 9 C -0.024 4.024 10 H 0.082 0.918 11 N -0.303 5.303 12 C -0.073 4.073 13 C 0.178 3.822 14 H 0.032 0.968 15 O -0.372 6.372 16 C -0.626 4.626 17 H 0.075 0.925 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.190 1.190 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.153 0.847 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.196 0.804 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.161 9.371 7.739 17.192 hybrid contribution 1.856 -0.027 0.376 1.894 sum -10.304 9.344 8.114 16.104 Atomic orbital electron populations 1.21798 0.95277 1.01419 1.01939 1.21370 0.95641 0.96367 1.01312 1.21067 0.92967 0.95998 0.98149 0.90256 1.21573 1.00721 0.95341 0.97399 1.21499 0.94420 0.96737 1.02264 1.21521 0.97146 1.00346 0.96845 1.22140 0.99978 0.97221 0.99064 1.21682 0.95387 0.91759 0.93530 0.91820 1.60591 1.22900 1.40533 1.06255 1.22439 0.88896 0.97170 0.98772 1.19142 0.86755 0.85330 0.91008 0.96845 1.86492 1.69033 1.38100 1.43534 1.22049 1.04272 1.36898 0.99393 0.92472 1.25905 1.01523 0.95747 0.94529 1.70229 1.38858 1.39321 1.05283 0.85550 0.79253 0.78919 0.77783 1.19772 1.20847 1.18998 0.92459 0.93185 0.92107 0.93017 0.93477 0.90962 0.93384 0.91590 0.90847 0.93807 0.91136 0.93696 0.90070 0.84678 0.96477 0.92300 0.80444 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.67 71.98 0.70 -2.31 16 2 C -0.11 -2.79 5.17 30.59 0.16 -2.64 16 3 C -0.06 -1.48 2.01 -10.79 -0.02 -1.51 16 4 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 5 C -0.11 -2.56 4.72 30.59 0.14 -2.42 16 6 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 7 C -0.12 -2.81 5.67 30.59 0.17 -2.63 16 8 C -0.14 -3.57 5.52 30.59 0.17 -3.40 16 9 C 0.09 2.41 2.30 44.92 0.10 2.51 16 10 H 0.06 1.85 7.80 -2.39 -0.02 1.83 16 11 N -0.67 -23.66 4.96 -491.56 -2.44 -26.10 16 12 C 0.06 2.37 5.08 86.30 0.44 2.80 16 13 C 0.24 12.31 3.03 29.85 0.09 12.40 16 14 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 15 O -0.57 -30.56 12.60 -148.98 -1.88 -32.43 16 16 C -0.59 -32.87 8.76 25.60 0.22 -32.65 16 17 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 18 C 0.03 1.44 5.40 84.65 0.46 1.89 16 19 N -0.90 -54.75 12.84 21.45 0.28 -54.47 16 20 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H 0.06 1.12 6.56 -2.39 -0.02 1.10 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.64 7.76 -2.39 -0.02 1.62 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.43 6.57 -2.39 -0.02 1.42 16 30 H 0.05 1.34 7.21 -2.39 -0.02 1.32 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.21 6.26 -2.39 -0.01 1.19 16 34 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.04 1.24 7.46 -2.39 -0.02 1.22 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.33 12.19 5.56 -89.70 -0.50 11.69 16 38 H 0.02 0.71 7.44 -2.39 -0.02 0.69 16 39 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 40 H 0.35 17.10 9.04 -74.06 -0.67 16.44 16 41 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -62.66 313.54 0.63 -62.03 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -0.17 Total: 35.04 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 2.81 Total: -29.97 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.16 Total: -80.57 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.88 Total: -32.43 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -62.66 0.63 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332919785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.818 kcal (2) G-P(sol) polarization free energy of solvation -62.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds