Wall clock time and date at job start Sun Mar 29 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.53002 * 109.46814 * 119.99595 * 2 1 3 5 5 H 1.08997 * 109.50711 * 299.91818 * 4 2 1 6 6 C 1.53119 * 109.50255 * 60.00361 * 4 2 1 7 7 C 1.53123 * 109.15907 * 177.59170 * 6 4 2 8 8 C 1.53042 * 109.27827 * 302.34501 * 7 6 4 9 9 N 1.46847 * 109.52445 * 59.17719 * 8 7 6 10 10 C 1.46893 * 110.99931 * 174.15778 * 9 8 7 11 11 C 1.53003 * 109.47518 * 293.88342 * 10 9 8 12 12 H 1.08996 * 109.47083 * 60.65802 * 11 10 9 13 13 O 1.42905 * 109.46774 * 300.65973 * 11 10 9 14 14 C 1.50703 * 109.47019 * 180.66463 * 11 10 9 15 15 H 1.08000 * 120.00399 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99673 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00383 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99772 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47160 * 60.00003 * 18 16 14 20 20 H 1.48508 * 109.47044 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47236 * 299.99617 * 18 16 14 22 22 C 1.46841 * 111.20040 * 298.26196 * 9 8 7 23 23 H 1.09003 * 109.46953 * 300.00151 * 1 2 3 24 24 H 1.08992 * 109.47098 * 60.00203 * 1 2 3 25 25 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47278 * 239.99478 * 2 1 3 27 27 H 1.09002 * 109.46893 * 299.99858 * 3 2 1 28 28 H 1.08999 * 109.47514 * 59.99623 * 3 2 1 29 29 H 1.09004 * 109.46995 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.52425 * 57.68614 * 6 4 2 31 31 H 1.09000 * 109.52031 * 297.49044 * 6 4 2 32 32 H 1.08996 * 109.50432 * 182.40307 * 7 6 4 33 33 H 1.09002 * 109.53355 * 62.30224 * 7 6 4 34 34 H 1.08996 * 109.45970 * 299.16157 * 8 7 6 35 35 H 1.08994 * 109.45105 * 179.18851 * 8 7 6 36 36 H 1.08999 * 109.47371 * 173.87890 * 10 9 8 37 37 H 1.09002 * 109.46986 * 53.87927 * 10 9 8 38 38 H 0.96698 * 113.99715 * 299.99981 * 13 11 10 39 39 H 0.97000 * 120.00189 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46257 * 181.76089 * 22 9 8 41 41 H 1.09004 * 109.46079 * 301.72746 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6781 -0.2069 2.1396 6 6 1.5300 -2.1650 1.2501 7 6 2.0937 -2.8964 2.4715 8 6 3.6225 -2.8380 2.4344 9 7 4.0603 -1.4363 2.4357 10 6 5.5225 -1.3416 2.5401 11 6 5.9711 -1.8627 3.9069 12 1 5.6759 -2.9066 4.0125 13 8 5.3560 -1.0871 4.9376 14 6 7.4696 -1.7503 4.0202 15 1 8.0446 -1.3479 3.1994 16 6 8.1067 -2.1622 5.1715 17 7 7.4066 -2.6527 6.1710 18 14 9.9643 -2.0236 5.3117 19 1 10.3667 -0.6014 5.1682 20 1 10.3996 -2.5292 6.6385 21 1 10.6031 -2.8294 4.2404 22 6 3.5704 -0.7259 1.2476 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.8587 -2.6679 0.3406 31 1 0.4409 -2.1665 1.2952 32 1 1.7687 -3.9366 2.4548 33 1 1.7332 -2.4171 3.3818 34 1 3.9829 -3.3302 1.5311 35 1 4.0265 -3.3455 3.3103 36 1 5.8280 -0.3011 2.4298 37 1 5.9824 -1.9407 1.7542 38 1 5.5749 -0.1458 4.9052 39 1 7.8548 -2.9421 6.9811 40 1 3.9368 0.3006 1.2615 41 1 3.9310 -1.2280 0.3498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333441055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:36 Heat of formation + Delta-G solvation = -94.719886 kcal Electronic energy + Delta-G solvation = -18336.186350 eV Core-core repulsion = 15634.972162 eV Total energy + Delta-G solvation = -2701.214188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45290 -37.97718 -36.23202 -34.22888 -33.61154 -30.84137 -29.81773 -28.19465 -26.70332 -24.70088 -23.79467 -22.27414 -20.85821 -20.49305 -19.06406 -16.88517 -16.68501 -16.45850 -16.04968 -15.79055 -15.21543 -14.99100 -14.87546 -14.48665 -14.39450 -14.21000 -13.56203 -13.27310 -13.12089 -12.84611 -12.83959 -12.76152 -12.47712 -12.28016 -12.08095 -12.02072 -11.92603 -11.66946 -11.39134 -11.19843 -10.89676 -10.83299 -10.66491 -10.06684 -9.06970 -8.12976 -6.39661 1.40157 1.42181 1.50392 2.38383 3.05060 3.13314 3.78391 3.87450 3.95162 4.14913 4.23810 4.31658 4.36458 4.40083 4.48817 4.58755 4.66061 4.67557 4.68704 4.85125 4.89301 4.98539 4.99294 5.05262 5.06496 5.09799 5.15753 5.20475 5.27965 5.35603 5.43131 5.56386 5.60518 5.65134 5.75896 6.03620 6.25215 6.38927 6.73988 7.34707 7.62559 8.91384 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042683 B = 0.005152 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.835453 B = 5433.061730 C = 5760.480859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.073 4.073 5 H 0.065 0.935 6 C -0.108 4.108 7 C -0.110 4.110 8 C 0.056 3.944 9 N -0.538 5.538 10 C 0.048 3.952 11 C 0.239 3.761 12 H 0.019 0.981 13 O -0.569 6.569 14 C -0.592 4.592 15 H 0.058 0.942 16 C 0.027 3.973 17 N -0.900 5.900 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.060 3.940 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.351 0.649 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 4.402 -12.921 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.091 4.091 5 H 0.084 0.916 6 C -0.146 4.146 7 C -0.148 4.148 8 C -0.072 4.072 9 N -0.262 5.262 10 C -0.080 4.080 11 C 0.181 3.819 12 H 0.036 0.964 13 O -0.372 6.372 14 C -0.630 4.630 15 H 0.076 0.924 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.785 3.215 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.067 4.067 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.195 0.805 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.573 3.954 -12.174 17.942 hybrid contribution 1.910 -0.079 -0.376 1.948 sum -10.662 3.875 -12.551 16.918 Atomic orbital electron populations 1.21849 0.94069 1.02223 1.01977 1.21083 0.96606 0.95999 0.96794 1.21887 1.00819 0.95895 1.02005 1.21186 0.93053 0.96312 0.98595 0.91649 1.21652 1.01018 0.94717 0.97168 1.21549 0.92963 1.01001 0.99302 1.22055 0.97175 0.88941 0.99048 1.61847 1.10723 1.13721 1.39905 1.22666 0.86725 1.00295 0.98279 1.19149 0.89842 0.90109 0.82791 0.96359 1.86500 1.73647 1.21528 1.55534 1.22042 0.94106 1.44982 1.01870 0.92370 1.25901 1.03011 0.93441 0.95215 1.70221 1.37324 1.40701 1.05414 0.85601 0.79617 0.78956 0.77316 1.19096 1.20903 1.19367 1.22250 0.96312 0.98285 0.89890 0.92875 0.91863 0.91992 0.91278 0.91677 0.92898 0.93228 0.92021 0.89829 0.90428 0.92408 0.95749 0.93485 0.91412 0.96215 0.80454 0.92968 0.90970 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.84 71.98 0.64 -1.60 16 2 C -0.09 -1.62 2.51 -10.79 -0.03 -1.64 16 3 C -0.15 -2.74 8.84 71.98 0.64 -2.10 16 4 C -0.07 -1.76 1.94 -10.74 -0.02 -1.78 16 5 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.11 -2.47 4.86 30.67 0.15 -2.32 16 7 C -0.11 -3.14 6.09 30.65 0.19 -2.96 16 8 C 0.06 2.03 5.29 86.33 0.46 2.48 16 9 N -0.54 -20.30 4.51 -896.38 -4.04 -24.35 16 10 C 0.05 2.09 4.56 86.31 0.39 2.49 16 11 C 0.24 12.72 2.70 29.85 0.08 12.80 16 12 H 0.02 1.11 6.47 -2.39 -0.02 1.09 16 13 O -0.57 -31.15 12.58 -148.98 -1.87 -33.02 16 14 C -0.59 -33.37 8.76 25.60 0.22 -33.14 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 16 C 0.03 1.53 5.40 84.65 0.46 1.98 16 17 N -0.90 -54.98 12.84 21.45 0.28 -54.71 16 18 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.06 1.80 4.37 86.33 0.38 2.17 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.90 6.49 -2.39 -0.02 0.89 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.99 6.46 -2.39 -0.02 0.97 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.58 6.57 -2.39 -0.02 1.56 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 2.03 6.24 -2.39 -0.01 2.01 16 36 H 0.07 2.81 7.98 -2.39 -0.02 2.79 16 37 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 38 H 0.35 17.26 9.04 -74.06 -0.67 16.59 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.07 2.12 6.35 -2.39 -0.02 2.10 16 41 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -64.71 314.29 0.25 -64.46 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.31 Total: 25.31 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 3.55 Total: -23.62 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -3.77 Total: -79.05 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.87 Total: -33.02 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.71 0.25 -64.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333441055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.263 kcal (2) G-P(sol) polarization free energy of solvation -64.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds