Wall clock time and date at job start Sun Mar 29 2020 22:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47442 * 2 1 4 4 C 1.53004 * 109.47191 * 119.99714 * 2 1 3 5 5 H 1.08996 * 109.50537 * 300.07880 * 4 2 1 6 6 C 1.53123 * 109.50563 * 179.97438 * 4 2 1 7 7 C 1.53120 * 109.15869 * 182.40787 * 6 4 2 8 8 C 1.53038 * 109.28159 * 57.65791 * 7 6 4 9 9 N 1.46848 * 109.52100 * 300.81799 * 8 7 6 10 10 C 1.46898 * 111.00215 * 185.84057 * 9 8 7 11 11 C 1.52995 * 109.47263 * 164.04633 * 10 9 8 12 12 H 1.09004 * 109.47382 * 58.49920 * 11 10 9 13 13 O 1.42899 * 109.47278 * 298.49966 * 11 10 9 14 14 C 1.50697 * 109.47326 * 178.49582 * 11 10 9 15 15 H 1.07999 * 119.99704 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00302 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00223 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99786 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47005 * 89.99940 * 18 16 14 20 20 H 1.48494 * 109.47155 * 329.99644 * 18 16 14 21 21 H 1.48501 * 109.46740 * 209.99302 * 18 16 14 22 22 C 1.46851 * 111.19972 * 61.74208 * 9 8 7 23 23 H 1.09000 * 109.46947 * 299.99882 * 1 2 3 24 24 H 1.09000 * 109.46688 * 59.99922 * 1 2 3 25 25 H 1.09004 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47516 * 239.99711 * 2 1 3 27 27 H 1.09001 * 109.47750 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47242 * 299.99738 * 3 2 1 29 29 H 1.08998 * 109.47569 * 59.99694 * 3 2 1 30 30 H 1.08991 * 109.52188 * 62.49577 * 6 4 2 31 31 H 1.09007 * 109.52182 * 302.30992 * 6 4 2 32 32 H 1.08995 * 109.50140 * 297.71092 * 7 6 4 33 33 H 1.09002 * 109.52882 * 177.61113 * 7 6 4 34 34 H 1.08996 * 109.46452 * 180.80563 * 8 7 6 35 35 H 1.08997 * 109.46404 * 60.83091 * 8 7 6 36 36 H 1.09000 * 109.46880 * 44.04754 * 10 9 8 37 37 H 1.08996 * 109.47044 * 284.04736 * 10 9 8 38 38 H 0.96696 * 113.99705 * 299.99532 * 13 11 10 39 39 H 0.97002 * 120.00412 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46105 * 58.27295 * 22 9 8 41 41 H 1.08995 * 109.46725 * 178.24522 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6759 -0.2086 2.1396 6 6 3.5712 -0.7222 1.2498 7 6 4.0729 -1.4975 2.4712 8 6 3.5078 -2.9192 2.4343 9 7 2.0404 -2.8642 2.4360 10 6 1.4632 -4.2110 2.5407 11 6 -0.0110 -4.1048 2.9361 12 1 -0.5451 -3.5136 2.1922 13 8 -0.1173 -3.4721 4.2130 14 6 -0.6127 -5.4846 3.0075 15 1 -0.0043 -6.3507 2.7928 16 6 -1.9395 -5.6413 3.3480 17 7 -2.4645 -6.8455 3.4108 18 14 -2.9915 -4.1433 3.7202 19 1 -3.6271 -3.6612 2.4676 20 1 -2.1389 -3.0683 4.2881 21 1 -4.0451 -4.5095 4.7005 22 6 1.5338 -2.1655 1.2479 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.9361 0.3038 1.2944 31 1 3.9355 -1.2001 0.3402 32 1 3.7411 -0.9974 3.3810 33 1 5.1620 -1.5383 2.4548 34 1 3.8516 -3.4695 3.3102 35 1 3.8513 -3.4233 1.5310 36 1 2.0025 -4.7795 3.2984 37 1 1.5458 -4.7175 1.5791 38 1 0.3357 -3.9444 4.9249 39 1 -3.3980 -6.9558 3.6500 40 1 1.8866 -2.6731 0.3501 41 1 0.4439 -2.1683 1.2620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333441056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:38 Heat of formation + Delta-G solvation = -69.570252 kcal Electronic energy + Delta-G solvation = -18595.156309 eV Core-core repulsion = 15895.032691 eV Total energy + Delta-G solvation = -2700.123618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.28670 -36.48671 -35.07630 -32.44052 -32.18412 -29.53134 -28.53236 -27.25600 -25.10630 -23.29034 -22.65189 -20.27019 -19.86727 -19.49138 -17.28528 -15.62237 -15.21653 -14.69741 -14.66945 -14.28284 -14.01401 -13.80197 -13.52577 -13.29253 -13.14065 -12.62196 -12.48995 -12.32275 -12.03139 -11.57299 -11.36761 -11.20969 -10.97971 -10.90684 -10.88597 -10.70288 -10.36327 -10.34382 -10.09669 -9.90624 -9.66955 -8.96521 -8.58091 -8.19628 -7.67059 -6.09674 -4.20524 3.42023 3.51581 3.80400 4.31382 4.57883 4.77685 4.89258 4.93649 5.13777 5.23235 5.26325 5.33389 5.54450 5.62985 5.64221 5.71196 5.73979 5.85597 5.87559 5.92852 5.93674 5.98075 6.02130 6.09415 6.15538 6.19620 6.25949 6.27249 6.33798 6.44547 6.53528 6.64448 6.67555 7.34605 7.47562 7.68760 7.77323 8.33423 8.87540 9.17539 9.56006 11.01072 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.007088 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.930679 B = 3949.249172 C = 4626.200564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.079 4.079 5 H 0.078 0.922 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.055 3.945 9 N -0.530 5.530 10 C 0.041 3.959 11 C 0.204 3.796 12 H 0.051 0.949 13 O -0.570 6.570 14 C -0.566 4.566 15 H 0.070 0.930 16 C 0.084 3.916 17 N -0.895 5.895 18 Si 0.870 3.130 19 H -0.288 1.288 20 H -0.214 1.214 21 H -0.296 1.296 22 C 0.060 3.940 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.353 0.647 39 H 0.264 0.736 40 H 0.023 0.977 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.025 13.737 -5.110 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.097 4.097 5 H 0.097 0.903 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.073 4.073 9 N -0.254 5.254 10 C -0.087 4.087 11 C 0.146 3.854 12 H 0.068 0.932 13 O -0.375 6.375 14 C -0.603 4.603 15 H 0.088 0.912 16 C -0.120 4.120 17 N -0.532 5.532 18 Si 0.696 3.304 19 H -0.215 1.215 20 H -0.136 1.136 21 H -0.223 1.223 22 C -0.068 4.068 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.198 0.802 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.398 14.332 -5.007 18.401 hybrid contribution -0.096 -0.540 -0.389 0.673 sum 10.302 13.792 -5.395 18.041 Atomic orbital electron populations 1.21907 0.95142 1.02361 1.01453 1.21116 0.95925 0.95887 0.98048 1.21868 1.00867 0.96130 1.01454 1.21234 0.94776 0.95738 0.98000 0.90315 1.21665 0.95704 0.99847 0.97979 1.21569 0.98907 0.95892 0.98936 1.22066 0.88962 0.96409 0.99905 1.61919 1.05097 1.19178 1.39178 1.22822 0.98988 0.87068 0.99805 1.19671 0.89540 0.92907 0.83284 0.93158 1.86661 1.77338 1.54557 1.18910 1.21547 0.96522 0.92349 1.49917 0.91185 1.24979 0.97894 0.96166 0.93011 1.69963 1.13905 1.22221 1.47150 0.87045 0.79409 0.85676 0.78267 1.21524 1.13637 1.22324 1.22178 1.00757 0.93232 0.90587 0.92514 0.93122 0.92070 0.91636 0.92649 0.93118 0.92712 0.92009 0.92703 0.91198 0.92246 0.91247 0.95879 0.91458 0.95094 0.80170 0.92644 0.95833 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.85 37.16 0.33 -1.51 16 2 C -0.09 -1.05 2.51 -90.62 -0.23 -1.28 16 3 C -0.15 -1.42 8.84 37.15 0.33 -1.10 16 4 C -0.08 -1.04 1.94 -90.53 -0.18 -1.22 16 5 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 6 C -0.11 -1.34 4.86 -26.61 -0.13 -1.47 16 7 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 8 C 0.05 0.80 5.44 -3.83 -0.02 0.78 16 9 N -0.53 -9.26 4.51 -234.67 -1.06 -10.31 16 10 C 0.04 0.82 4.57 -3.83 -0.02 0.80 16 11 C 0.20 4.83 2.32 -27.89 -0.06 4.77 16 12 H 0.05 1.24 6.03 -51.93 -0.31 0.93 16 13 O -0.57 -13.30 10.03 -35.23 -0.35 -13.65 16 14 C -0.57 -15.86 9.34 -34.44 -0.32 -16.18 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 17 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 18 Si 0.87 22.15 26.99 -169.99 -4.59 17.56 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 20 H -0.21 -5.36 5.30 56.52 0.30 -5.06 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 22 C 0.06 0.98 4.21 -3.83 -0.02 0.96 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.82 6.45 -51.93 -0.34 0.49 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.50 6.49 -51.93 -0.34 0.16 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.64 6.58 -51.93 -0.34 0.29 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 37 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.35 7.41 9.04 45.56 0.41 7.82 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.45 4.81 -51.93 -0.25 1.20 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -30.56 308.58 -7.86 -38.42 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.71 Total: 4.83 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.58 Total: -14.68 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.28 Total: -37.13 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.35 Total: -13.65 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.59 Total: 17.56 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.56 -7.86 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333441056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.151 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds