Wall clock time and date at job start Sun Mar 29 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47442 * 2 1 4 4 C 1.53004 * 109.47191 * 119.99714 * 2 1 3 5 5 H 1.08996 * 109.50537 * 300.07880 * 4 2 1 6 6 C 1.53123 * 109.50563 * 179.97438 * 4 2 1 7 7 C 1.53120 * 109.15869 * 182.40787 * 6 4 2 8 8 C 1.53038 * 109.28159 * 57.65791 * 7 6 4 9 9 N 1.46848 * 109.52100 * 300.81799 * 8 7 6 10 10 C 1.46898 * 111.00215 * 185.84057 * 9 8 7 11 11 C 1.52995 * 109.47263 * 164.04633 * 10 9 8 12 12 H 1.09004 * 109.47382 * 58.49920 * 11 10 9 13 13 O 1.42899 * 109.47278 * 298.49966 * 11 10 9 14 14 C 1.50697 * 109.47326 * 178.49582 * 11 10 9 15 15 H 1.07999 * 119.99704 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00302 * 179.97438 * 14 11 10 17 17 N 1.31513 * 120.00223 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99786 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47005 * 89.99940 * 18 16 14 20 20 H 1.48494 * 109.47155 * 329.99644 * 18 16 14 21 21 H 1.48501 * 109.46740 * 209.99302 * 18 16 14 22 22 C 1.46851 * 111.19972 * 61.74208 * 9 8 7 23 23 H 1.09000 * 109.46947 * 299.99882 * 1 2 3 24 24 H 1.09000 * 109.46688 * 59.99922 * 1 2 3 25 25 H 1.09004 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47516 * 239.99711 * 2 1 3 27 27 H 1.09001 * 109.47750 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47242 * 299.99738 * 3 2 1 29 29 H 1.08998 * 109.47569 * 59.99694 * 3 2 1 30 30 H 1.08991 * 109.52188 * 62.49577 * 6 4 2 31 31 H 1.09007 * 109.52182 * 302.30992 * 6 4 2 32 32 H 1.08995 * 109.50140 * 297.71092 * 7 6 4 33 33 H 1.09002 * 109.52882 * 177.61113 * 7 6 4 34 34 H 1.08996 * 109.46452 * 180.80563 * 8 7 6 35 35 H 1.08997 * 109.46404 * 60.83091 * 8 7 6 36 36 H 1.09000 * 109.46880 * 44.04754 * 10 9 8 37 37 H 1.08996 * 109.47044 * 284.04736 * 10 9 8 38 38 H 0.96696 * 113.99705 * 299.99532 * 13 11 10 39 39 H 0.97002 * 120.00412 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46105 * 58.27295 * 22 9 8 41 41 H 1.08995 * 109.46725 * 178.24522 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6759 -0.2086 2.1396 6 6 3.5712 -0.7222 1.2498 7 6 4.0729 -1.4975 2.4712 8 6 3.5078 -2.9192 2.4343 9 7 2.0404 -2.8642 2.4360 10 6 1.4632 -4.2110 2.5407 11 6 -0.0110 -4.1048 2.9361 12 1 -0.5451 -3.5136 2.1922 13 8 -0.1173 -3.4721 4.2130 14 6 -0.6127 -5.4846 3.0075 15 1 -0.0043 -6.3507 2.7928 16 6 -1.9395 -5.6413 3.3480 17 7 -2.4645 -6.8455 3.4108 18 14 -2.9915 -4.1433 3.7202 19 1 -3.6271 -3.6612 2.4676 20 1 -2.1389 -3.0683 4.2881 21 1 -4.0451 -4.5095 4.7005 22 6 1.5338 -2.1655 1.2479 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.9361 0.3038 1.2944 31 1 3.9355 -1.2001 0.3402 32 1 3.7411 -0.9974 3.3810 33 1 5.1620 -1.5383 2.4548 34 1 3.8516 -3.4695 3.3102 35 1 3.8513 -3.4233 1.5310 36 1 2.0025 -4.7795 3.2984 37 1 1.5458 -4.7175 1.5791 38 1 0.3357 -3.9444 4.9249 39 1 -3.3980 -6.9558 3.6500 40 1 1.8866 -2.6731 0.3501 41 1 0.4439 -2.1683 1.2620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333441056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:37 Heat of formation + Delta-G solvation = -90.945642 kcal Electronic energy + Delta-G solvation = -18596.083215 eV Core-core repulsion = 15895.032691 eV Total energy + Delta-G solvation = -2701.050525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48518 -38.10832 -36.39607 -34.41604 -33.66564 -30.63279 -30.29609 -28.26932 -26.79485 -24.39294 -24.08353 -21.92269 -21.03698 -20.53617 -19.35752 -16.97466 -16.77061 -16.53306 -16.33215 -15.60626 -15.16876 -15.01089 -14.88750 -14.81653 -14.41853 -14.20190 -13.75295 -13.39750 -13.34682 -12.98376 -12.91240 -12.66367 -12.50444 -12.28735 -12.16368 -11.93047 -11.74785 -11.67396 -11.37359 -11.14666 -10.98390 -10.85558 -10.77161 -10.11117 -9.10666 -8.36879 -6.51236 1.37840 1.43316 1.74999 2.43312 2.98515 3.02582 3.77838 3.85012 3.93900 4.10502 4.16579 4.23553 4.31422 4.35906 4.48874 4.51583 4.60111 4.67797 4.71416 4.83524 4.87705 4.92269 4.99575 5.02030 5.05126 5.08030 5.14977 5.20103 5.26370 5.33213 5.42669 5.47095 5.48901 5.55916 5.64100 6.07443 6.20219 6.33951 6.61460 7.22370 7.38248 8.77428 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.007088 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.930679 B = 3949.249172 C = 4626.200564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.072 4.072 5 H 0.065 0.935 6 C -0.110 4.110 7 C -0.110 4.110 8 C 0.051 3.949 9 N -0.537 5.537 10 C 0.053 3.947 11 C 0.214 3.786 12 H 0.043 0.957 13 O -0.572 6.572 14 C -0.568 4.568 15 H 0.036 0.964 16 C 0.031 3.969 17 N -0.939 5.939 18 Si 0.936 3.064 19 H -0.286 1.286 20 H -0.206 1.206 21 H -0.295 1.295 22 C 0.059 3.941 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.020 0.980 38 H 0.364 0.636 39 H 0.267 0.733 40 H 0.022 0.978 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.382 16.283 -5.364 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.198 4.198 4 C -0.091 4.091 5 H 0.083 0.917 6 C -0.148 4.148 7 C -0.148 4.148 8 C -0.076 4.076 9 N -0.261 5.261 10 C -0.075 4.075 11 C 0.155 3.845 12 H 0.061 0.939 13 O -0.378 6.378 14 C -0.606 4.606 15 H 0.054 0.946 16 C -0.169 4.169 17 N -0.579 5.579 18 Si 0.760 3.240 19 H -0.212 1.212 20 H -0.127 1.127 21 H -0.222 1.222 22 C -0.069 4.069 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.211 0.789 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.780 16.887 -5.260 21.251 hybrid contribution -0.472 -1.403 -0.322 1.515 sum 11.308 15.483 -5.582 19.969 Atomic orbital electron populations 1.21916 0.95946 1.01160 1.01956 1.21102 0.95257 0.97133 0.97182 1.21828 1.01568 0.94489 1.01949 1.21182 0.96191 0.93398 0.98332 0.91659 1.21663 0.94055 1.01158 0.97906 1.21561 1.00330 0.93922 0.98950 1.22194 0.86861 0.98477 1.00112 1.61883 1.07076 1.17122 1.40026 1.22492 0.96946 0.88910 0.99165 1.19424 0.91557 0.90088 0.83413 0.93926 1.86592 1.77785 1.54393 1.19019 1.21868 0.96341 0.93526 1.48825 0.94589 1.25816 0.99324 0.98700 0.93062 1.70078 1.14493 1.24338 1.48963 0.86022 0.77643 0.82289 0.78020 1.21249 1.12749 1.22213 1.22212 0.99466 0.95191 0.89993 0.93036 0.91595 0.94115 0.91317 0.91465 0.92049 0.92849 0.89802 0.92176 0.91785 0.89661 0.91032 0.95679 0.91303 0.96182 0.78855 0.92415 0.95983 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.85 71.98 0.64 -2.91 16 2 C -0.09 -1.84 2.51 -10.79 -0.03 -1.87 16 3 C -0.14 -2.31 8.84 71.98 0.64 -1.67 16 4 C -0.07 -1.78 1.94 -10.74 -0.02 -1.80 16 5 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 6 C -0.11 -2.22 4.86 30.68 0.15 -2.07 16 7 C -0.11 -2.36 6.09 30.65 0.19 -2.17 16 8 C 0.05 1.40 5.44 86.33 0.47 1.87 16 9 N -0.54 -18.28 4.51 -896.36 -4.04 -22.32 16 10 C 0.05 2.14 4.57 86.30 0.39 2.54 16 11 C 0.21 10.14 2.32 29.85 0.07 10.21 16 12 H 0.04 2.12 6.03 -2.38 -0.01 2.10 16 13 O -0.57 -26.08 10.03 -148.98 -1.49 -27.58 16 14 C -0.57 -32.50 9.34 25.60 0.24 -32.26 16 15 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 16 C 0.03 1.81 5.47 84.65 0.46 2.27 16 17 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 18 Si 0.94 46.23 26.99 68.60 1.85 48.08 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.21 -9.79 5.30 99.48 0.53 -9.26 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 22 C 0.06 1.88 4.21 86.33 0.36 2.25 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 1.10 6.45 -2.39 -0.02 1.08 16 26 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.07 0.95 6.49 -2.39 -0.02 0.93 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.37 6.58 -2.39 -0.02 1.35 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 2.72 7.87 -2.39 -0.02 2.70 16 37 H 0.02 0.84 8.06 -2.39 -0.02 0.82 16 38 H 0.36 14.89 9.04 -74.06 -0.67 14.22 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 2.07 4.81 -2.39 -0.01 2.06 16 Total: -1.00 -65.63 308.58 0.31 -65.32 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.14 Total: 20.97 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.56 Total: -25.63 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.74 Total: -81.15 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -1.49 Total: -27.58 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.85 Total: 48.08 kcal Total: -65.63 0.31 -65.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333441056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.629 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds