Wall clock time and date at job start Sun Mar 29 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47580 * 2 1 4 4 C 1.52997 * 109.46997 * 120.00472 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47131 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47327 * 180.02562 * 7 6 5 9 9 C 1.47481 * 110.99355 * 265.96786 * 8 7 6 10 10 C 1.53512 * 87.93063 * 221.29315 * 9 8 7 11 11 O 1.42903 * 114.17320 * 272.37598 * 10 9 8 12 12 C 1.50705 * 114.34051 * 139.68498 * 10 9 8 13 13 H 1.07999 * 120.00232 * 266.07512 * 12 10 9 14 14 C 1.37882 * 119.99730 * 86.07951 * 12 10 9 15 15 N 1.31520 * 119.99334 * 179.97438 * 14 12 10 16 16 Si 1.86795 * 120.00290 * 359.97438 * 14 12 10 17 17 H 1.48504 * 109.46547 * 90.00110 * 16 14 12 18 18 H 1.48496 * 109.47372 * 210.00030 * 16 14 12 19 19 H 1.48503 * 109.47147 * 330.00516 * 16 14 12 20 20 C 1.47475 * 111.00372 * 170.00014 * 8 7 6 21 21 H 1.09001 * 109.46791 * 300.00268 * 1 2 3 22 22 H 1.08996 * 109.46972 * 59.99204 * 1 2 3 23 23 H 1.08993 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46801 * 240.00288 * 2 1 3 25 25 H 1.09004 * 109.47031 * 300.00599 * 3 2 1 26 26 H 1.09002 * 109.46818 * 60.00299 * 3 2 1 27 27 H 1.08994 * 109.47281 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47502 * 55.00061 * 4 2 1 29 29 H 1.09001 * 109.47289 * 294.99857 * 4 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 31 31 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 32 32 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 33 33 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 34 34 H 1.09001 * 109.46997 * 299.99574 * 7 6 5 35 35 H 1.08992 * 109.47534 * 59.99520 * 7 6 5 36 36 H 1.08994 * 113.47875 * 336.06070 * 9 8 7 37 37 H 1.09007 * 113.47528 * 106.52648 * 9 8 7 38 38 H 0.96700 * 114.00252 * 273.84420 * 11 10 9 39 39 H 0.96999 * 119.99311 * 179.97438 * 15 14 12 40 40 H 1.08996 * 113.47428 * 253.46883 * 20 8 7 41 41 H 1.09005 * 113.47730 * 23.86973 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1879 6 6 4.0748 -1.5531 2.4368 7 6 5.5996 -1.6623 2.3758 8 7 6.0892 -2.3560 3.5746 9 6 6.4685 -1.3925 4.6247 10 6 7.6947 -2.2710 4.9100 11 8 7.4573 -3.3191 5.8520 12 6 8.9607 -1.5005 5.1837 13 1 9.6499 -1.2907 4.3791 14 6 9.2391 -1.0635 6.4614 15 7 10.3442 -0.3915 6.7003 16 14 8.0469 -1.4257 7.8531 17 1 8.4034 -2.7211 8.4855 18 1 8.1243 -0.3425 8.8658 19 1 6.6652 -1.5017 7.3141 20 6 7.5193 -2.6916 3.4441 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6054 -1.7199 1.2950 29 1 1.7516 -0.1585 2.1370 30 1 3.8532 -1.3941 0.3002 31 1 3.9994 0.1673 1.1421 32 1 3.7864 -0.9906 3.3248 33 1 3.6401 -2.5517 2.4822 34 1 5.8883 -2.2247 1.4878 35 1 6.0339 -0.6637 2.3306 36 1 6.7220 -0.4057 4.2376 37 1 5.7611 -1.3521 5.4531 38 1 7.5684 -3.0514 6.7745 39 1 10.5399 -0.0837 7.5991 40 1 7.7025 -3.7521 3.2718 41 1 8.0530 -2.0520 2.7410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333717007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:35 Heat of formation + Delta-G solvation = -31.181562 kcal Electronic energy + Delta-G solvation = -17591.162042 eV Core-core repulsion = 14892.703082 eV Total energy + Delta-G solvation = -2698.458960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.49992 -37.34367 -35.18788 -33.28625 -32.41682 -29.39209 -27.37105 -26.86561 -25.15895 -24.50525 -21.91426 -20.67657 -19.98330 -19.06293 -17.28622 -16.25037 -15.78055 -15.21333 -14.96594 -14.47501 -14.07357 -13.91752 -13.47537 -13.22078 -12.85535 -12.66554 -12.42603 -12.26286 -12.05198 -11.92765 -11.54466 -11.42940 -11.17934 -10.97487 -10.88766 -10.70586 -10.54100 -10.40712 -10.22496 -10.09195 -9.93756 -9.20796 -8.90069 -8.51620 -8.07290 -6.32790 -4.36525 3.07711 3.16345 3.22533 4.13541 4.47783 4.70451 4.75519 4.77775 4.89582 5.08832 5.25235 5.33909 5.38437 5.43473 5.49993 5.57358 5.62913 5.68470 5.74437 5.81166 5.88153 5.91348 5.93011 5.95626 6.07656 6.11057 6.18365 6.23309 6.27946 6.43964 6.51512 6.55068 6.66705 6.91428 7.02029 7.34245 7.83351 8.14246 8.69522 8.71139 9.26858 10.79877 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038983 B = 0.004221 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.081522 B = 6632.278742 C = 6709.946841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.017 3.983 8 N -0.473 5.473 9 C -0.033 4.033 10 C 0.202 3.798 11 O -0.548 6.548 12 C -0.534 4.534 13 H 0.086 0.914 14 C 0.076 3.924 15 N -0.883 5.883 16 Si 0.861 3.139 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.254 1.254 20 C 0.018 3.982 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.347 0.653 39 H 0.269 0.731 40 H 0.075 0.925 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 1.514 -10.306 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.112 4.112 8 N -0.195 5.195 9 C -0.162 4.162 10 C 0.161 3.839 11 O -0.359 6.359 12 C -0.572 4.572 13 H 0.104 0.896 14 C -0.128 4.128 15 N -0.519 5.519 16 Si 0.690 3.310 17 H -0.194 1.194 18 H -0.213 1.213 19 H -0.179 1.179 20 C -0.111 4.111 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.199 0.801 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.974 0.769 -10.606 19.189 hybrid contribution 0.123 0.969 1.024 1.415 sum -15.850 1.738 -9.582 18.603 Atomic orbital electron populations 1.21846 0.95550 1.01556 1.01531 1.21138 0.95410 0.96478 0.98666 1.21899 1.01446 0.95938 1.01413 1.21649 0.95757 1.00290 0.97450 1.21637 0.95129 1.00709 0.98310 1.21443 0.95088 1.00713 0.97344 1.22685 0.95851 0.97638 0.95015 1.68868 1.16846 1.28023 1.05786 1.24987 0.99472 0.96161 0.95589 1.20089 0.91934 0.84963 0.86943 1.86462 1.92923 1.39251 1.17265 1.21335 1.04825 1.34511 0.96481 0.89587 1.25020 0.94989 0.94119 0.98651 1.69877 1.23880 1.36301 1.21882 0.87273 0.82558 0.78393 0.82742 1.19403 1.21306 1.17920 1.23893 0.88371 1.01291 0.97558 0.92775 0.92969 0.92810 0.91401 0.93098 0.92777 0.92257 0.92078 0.92058 0.92257 0.91949 0.92278 0.91661 0.91852 0.94083 0.91063 0.91458 0.80104 0.92095 0.90624 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.87 2.92 -90.62 -0.26 -1.13 16 3 C -0.15 -1.29 8.95 37.16 0.33 -0.96 16 4 C -0.11 -1.14 4.68 -26.73 -0.13 -1.26 16 5 C -0.12 -1.35 4.97 -26.73 -0.13 -1.48 16 6 C -0.11 -1.51 5.54 -26.73 -0.15 -1.66 16 7 C 0.02 0.28 4.82 -3.82 -0.02 0.26 16 8 N -0.47 -9.56 6.33 -244.66 -1.55 -11.11 16 9 C -0.03 -0.72 6.55 -7.55 -0.05 -0.77 16 10 C 0.20 4.96 1.09 -91.24 -0.10 4.86 16 11 O -0.55 -13.92 13.32 -35.23 -0.47 -14.39 16 12 C -0.53 -14.79 9.28 -34.44 -0.32 -15.11 16 13 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.88 -25.97 13.96 55.43 0.77 -25.19 16 16 Si 0.86 20.34 24.41 -169.99 -4.15 16.19 16 17 H -0.27 -6.11 7.06 56.52 0.40 -5.71 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.25 -5.79 5.47 56.52 0.31 -5.48 16 20 C 0.02 0.38 7.09 -7.56 -0.05 0.32 16 21 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.96 8.08 -51.93 -0.42 0.55 16 35 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 36 H 0.07 1.54 7.38 -51.93 -0.38 1.16 16 37 H 0.07 1.50 7.11 -51.92 -0.37 1.13 16 38 H 0.35 8.44 3.18 45.56 0.14 8.59 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.45 7.87 -51.93 -0.41 1.05 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -29.13 316.31 -8.49 -37.61 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.22 Total: 7.83 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -0.63 Total: -15.71 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.78 Total: -36.31 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.47 Total: -14.39 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.15 Total: 16.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.13 -8.49 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333717007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.433 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds