Wall clock time and date at job start Sun Mar 29 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47580 * 2 1 4 4 C 1.52997 * 109.46997 * 120.00472 * 2 1 3 5 5 C 1.53006 * 109.47127 * 174.99904 * 4 2 1 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47131 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.47327 * 180.02562 * 7 6 5 9 9 C 1.47481 * 110.99355 * 265.96786 * 8 7 6 10 10 C 1.53512 * 87.93063 * 221.29315 * 9 8 7 11 11 O 1.42903 * 114.17320 * 272.37598 * 10 9 8 12 12 C 1.50705 * 114.34051 * 139.68498 * 10 9 8 13 13 H 1.07999 * 120.00232 * 266.07512 * 12 10 9 14 14 C 1.37882 * 119.99730 * 86.07951 * 12 10 9 15 15 N 1.31520 * 119.99334 * 179.97438 * 14 12 10 16 16 Si 1.86795 * 120.00290 * 359.97438 * 14 12 10 17 17 H 1.48504 * 109.46547 * 90.00110 * 16 14 12 18 18 H 1.48496 * 109.47372 * 210.00030 * 16 14 12 19 19 H 1.48503 * 109.47147 * 330.00516 * 16 14 12 20 20 C 1.47475 * 111.00372 * 170.00014 * 8 7 6 21 21 H 1.09001 * 109.46791 * 300.00268 * 1 2 3 22 22 H 1.08996 * 109.46972 * 59.99204 * 1 2 3 23 23 H 1.08993 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46801 * 240.00288 * 2 1 3 25 25 H 1.09004 * 109.47031 * 300.00599 * 3 2 1 26 26 H 1.09002 * 109.46818 * 60.00299 * 3 2 1 27 27 H 1.08994 * 109.47281 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47502 * 55.00061 * 4 2 1 29 29 H 1.09001 * 109.47289 * 294.99857 * 4 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 5 4 2 31 31 H 1.08993 * 109.46955 * 60.00011 * 5 4 2 32 32 H 1.09001 * 109.47289 * 299.99953 * 6 5 4 33 33 H 1.09004 * 109.47261 * 59.99697 * 6 5 4 34 34 H 1.09001 * 109.46997 * 299.99574 * 7 6 5 35 35 H 1.08992 * 109.47534 * 59.99520 * 7 6 5 36 36 H 1.08994 * 113.47875 * 336.06070 * 9 8 7 37 37 H 1.09007 * 113.47528 * 106.52648 * 9 8 7 38 38 H 0.96700 * 114.00252 * 273.84420 * 11 10 9 39 39 H 0.96999 * 119.99311 * 179.97438 * 15 14 12 40 40 H 1.08996 * 113.47428 * 253.46883 * 20 8 7 41 41 H 1.09005 * 113.47730 * 23.86973 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1879 6 6 4.0748 -1.5531 2.4368 7 6 5.5996 -1.6623 2.3758 8 7 6.0892 -2.3560 3.5746 9 6 6.4685 -1.3925 4.6247 10 6 7.6947 -2.2710 4.9100 11 8 7.4573 -3.3191 5.8520 12 6 8.9607 -1.5005 5.1837 13 1 9.6499 -1.2907 4.3791 14 6 9.2391 -1.0635 6.4614 15 7 10.3442 -0.3915 6.7003 16 14 8.0469 -1.4257 7.8531 17 1 8.4034 -2.7211 8.4855 18 1 8.1243 -0.3425 8.8658 19 1 6.6652 -1.5017 7.3141 20 6 7.5193 -2.6916 3.4441 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6054 -1.7199 1.2950 29 1 1.7516 -0.1585 2.1370 30 1 3.8532 -1.3941 0.3002 31 1 3.9994 0.1673 1.1421 32 1 3.7864 -0.9906 3.3248 33 1 3.6401 -2.5517 2.4822 34 1 5.8883 -2.2247 1.4878 35 1 6.0339 -0.6637 2.3306 36 1 6.7220 -0.4057 4.2376 37 1 5.7611 -1.3521 5.4531 38 1 7.5684 -3.0514 6.7745 39 1 10.5399 -0.0837 7.5991 40 1 7.7025 -3.7521 3.2718 41 1 8.0530 -2.0520 2.7410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333717007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:35 Heat of formation + Delta-G solvation = -52.042843 kcal Electronic energy + Delta-G solvation = -17592.066655 eV Core-core repulsion = 14892.703082 eV Total energy + Delta-G solvation = -2699.363573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.22821 -38.19308 -36.89523 -34.57599 -34.43494 -30.74510 -28.53211 -27.99699 -26.90287 -25.97692 -23.20736 -21.85356 -20.91123 -20.73571 -19.34311 -18.18709 -16.96087 -16.75785 -16.18549 -15.55330 -15.36475 -15.30638 -14.88616 -14.86006 -14.35218 -14.02939 -13.88989 -13.50996 -13.12021 -13.01683 -12.82714 -12.62498 -12.51442 -12.33353 -12.23432 -12.03094 -11.90272 -11.53650 -11.44439 -11.27104 -11.22497 -11.10350 -10.88883 -10.41987 -9.76074 -8.46779 -6.56602 1.20276 1.27116 1.35964 2.14422 2.76077 3.03997 3.47960 3.81104 3.94405 3.98690 4.03686 4.09558 4.13855 4.32318 4.38971 4.52861 4.55157 4.70085 4.78488 4.78877 4.83965 4.85849 4.87197 4.90739 4.97680 5.04477 5.12834 5.13650 5.18417 5.27376 5.31437 5.34320 5.41765 5.47500 5.56481 5.58710 6.00010 6.23472 6.47887 6.74524 7.11070 8.69253 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.038983 B = 0.004221 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.081522 B = 6632.278742 C = 6709.946841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.101 4.101 7 C 0.015 3.985 8 N -0.472 5.472 9 C -0.022 4.022 10 C 0.183 3.817 11 O -0.555 6.555 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.023 3.977 15 N -0.928 5.928 16 Si 0.922 3.078 17 H -0.252 1.252 18 H -0.281 1.281 19 H -0.240 1.240 20 C 0.022 3.978 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.350 0.650 39 H 0.273 0.727 40 H 0.080 0.920 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 1.188 -10.704 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.139 4.139 7 C -0.113 4.113 8 N -0.195 5.195 9 C -0.152 4.152 10 C 0.142 3.858 11 O -0.366 6.366 12 C -0.583 4.583 13 H 0.069 0.931 14 C -0.177 4.177 15 N -0.565 5.565 16 Si 0.747 3.253 17 H -0.178 1.178 18 H -0.207 1.207 19 H -0.164 1.164 20 C -0.106 4.106 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.202 0.798 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.136 0.435 -11.022 21.227 hybrid contribution 0.857 1.075 1.062 1.737 sum -17.279 1.509 -9.961 20.001 Atomic orbital electron populations 1.21835 0.94789 1.01873 1.01888 1.21128 0.96060 0.96330 0.98052 1.21905 1.01106 0.95995 1.01748 1.21616 0.94760 1.00537 0.97951 1.21573 0.95973 1.00396 0.97124 1.21387 0.93248 1.00873 0.98357 1.22800 0.97351 0.97391 0.93802 1.68836 1.15715 1.27908 1.06992 1.24780 0.98013 0.96015 0.96380 1.20232 0.91573 0.85488 0.88485 1.86454 1.92860 1.39626 1.17641 1.21507 1.05815 1.35097 0.95921 0.93091 1.25855 0.96730 0.93727 1.01394 1.70009 1.25969 1.37728 1.22844 0.86260 0.80735 0.78936 0.79326 1.17789 1.20698 1.16411 1.23842 0.89457 1.01753 0.95594 0.92897 0.92172 0.92535 0.91118 0.92228 0.93033 0.92775 0.91901 0.92522 0.91465 0.91928 0.93234 0.91808 0.90361 0.94137 0.91095 0.91338 0.79796 0.91753 0.90115 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.19 71.98 0.66 -1.33 16 2 C -0.10 -1.50 2.92 -10.79 -0.03 -1.53 16 3 C -0.15 -2.32 8.95 71.98 0.64 -1.68 16 4 C -0.11 -1.99 4.68 30.60 0.14 -1.85 16 5 C -0.11 -2.29 4.97 30.60 0.15 -2.14 16 6 C -0.10 -2.61 5.54 30.59 0.17 -2.44 16 7 C 0.02 0.46 4.82 86.30 0.42 0.88 16 8 N -0.47 -18.24 6.33 -928.35 -5.88 -24.12 16 9 C -0.02 -0.95 6.55 83.57 0.55 -0.41 16 10 C 0.18 8.86 1.09 -11.20 -0.01 8.85 16 11 O -0.55 -27.31 13.32 -148.98 -1.98 -29.30 16 12 C -0.55 -30.71 9.28 25.60 0.24 -30.48 16 13 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 14 C 0.02 1.31 5.47 84.66 0.46 1.77 16 15 N -0.93 -55.59 13.96 21.45 0.30 -55.29 16 16 Si 0.92 41.44 24.41 68.60 1.67 43.11 16 17 H -0.25 -10.69 7.06 99.48 0.70 -9.99 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.24 -10.15 5.47 99.48 0.54 -9.61 16 20 C 0.02 0.94 7.09 83.57 0.59 1.53 16 21 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.88 6.56 -2.39 -0.02 0.87 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.28 6.56 -2.39 -0.02 1.27 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 35 H 0.04 1.26 7.30 -2.39 -0.02 1.24 16 36 H 0.07 3.01 7.38 -2.39 -0.02 2.99 16 37 H 0.07 2.91 7.11 -2.38 -0.02 2.89 16 38 H 0.35 16.30 3.18 -74.06 -0.24 16.06 16 39 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.08 3.11 7.87 -2.38 -0.02 3.09 16 Total: -1.00 -61.75 316.31 -1.34 -63.09 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.57 Total: 31.32 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 3.98 Total: -28.81 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -5.58 Total: -79.41 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.98 Total: -29.30 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.67 Total: 43.11 kcal Total: -61.75 -1.34 -63.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333717007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.048 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds