Wall clock time and date at job start Sun Mar 29 2020 22:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 C 1.53008 * 109.46794 * 240.00109 * 2 1 3 5 5 C 1.53000 * 109.46966 * 120.00578 * 2 1 3 6 6 H 1.08994 * 110.76563 * 294.63555 * 5 2 1 7 7 C 1.55146 * 110.70395 * 171.43650 * 5 2 1 8 8 C 1.54910 * 101.65044 * 205.96563 * 7 5 2 9 9 N 1.47838 * 104.79709 * 37.06655 * 8 7 5 10 10 C 1.46906 * 111.00117 * 213.63520 * 9 8 7 11 11 C 1.52999 * 109.46823 * 290.84846 * 10 9 8 12 12 H 1.08994 * 109.47546 * 60.00073 * 11 10 9 13 13 O 1.42899 * 109.47442 * 299.99233 * 11 10 9 14 14 C 1.50705 * 109.46743 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00194 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00222 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00211 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99620 * 359.97438 * 16 14 11 19 19 H 1.48497 * 109.46935 * 90.00503 * 18 16 14 20 20 H 1.48497 * 109.47065 * 210.00224 * 18 16 14 21 21 H 1.48497 * 109.47273 * 330.00289 * 18 16 14 22 22 C 1.47443 * 108.57212 * 335.90911 * 9 8 7 23 23 H 1.09007 * 109.46734 * 299.99954 * 1 2 3 24 24 H 1.09003 * 109.46928 * 59.99233 * 1 2 3 25 25 H 1.08994 * 109.47582 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47059 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47684 * 300.00161 * 3 2 1 28 28 H 1.08998 * 109.46928 * 60.00879 * 3 2 1 29 29 H 1.09000 * 109.47060 * 293.18140 * 4 2 1 30 30 H 1.09002 * 109.46840 * 53.18352 * 4 2 1 31 31 H 1.08998 * 109.46763 * 173.17643 * 4 2 1 32 32 H 1.09008 * 110.98756 * 324.05282 * 7 5 2 33 33 H 1.08993 * 110.99086 * 87.86967 * 7 5 2 34 34 H 1.09002 * 110.36779 * 278.23728 * 8 7 5 35 35 H 1.08997 * 110.37058 * 155.90414 * 8 7 5 36 36 H 1.08994 * 109.47000 * 170.84585 * 10 9 8 37 37 H 1.09001 * 109.46813 * 50.84423 * 10 9 8 38 38 H 0.96700 * 114.00202 * 300.00721 * 13 11 10 39 39 H 0.96996 * 119.99865 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.89237 * 120.39568 * 22 9 8 41 41 H 1.09002 * 109.88473 * 241.42149 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.7682 -0.1722 2.1506 7 6 3.5758 -0.9279 1.1747 8 6 3.7679 -2.1738 2.0751 9 7 2.5891 -3.0229 1.8013 10 6 2.1769 -3.7558 3.0059 11 6 3.2305 -4.8119 3.3457 12 1 4.1884 -4.3244 3.5270 13 8 3.3596 -5.7246 2.2539 14 6 2.8080 -5.5633 4.5819 15 1 1.8810 -5.3124 5.0759 16 6 3.6054 -6.5704 5.0828 17 7 3.2365 -7.2264 6.1612 18 14 5.2093 -7.0038 4.2287 19 1 6.3104 -6.1871 4.7993 20 1 5.5049 -8.4447 4.4326 21 1 5.0874 -6.7243 2.7754 22 6 1.4974 -2.1649 1.3053 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.7796 -1.7781 -1.1904 30 1 1.5804 -0.2826 -2.1351 31 1 3.1231 -0.6167 -1.3125 32 1 3.8931 -1.1325 0.1521 33 1 4.1057 -0.0667 1.5814 34 1 3.7905 -1.8830 3.1253 35 1 4.6845 -2.6986 1.8060 36 1 1.2191 -4.2433 2.8246 37 1 2.0785 -3.0596 3.8388 38 1 2.5435 -6.1955 2.0362 39 1 3.7973 -7.9351 6.5134 40 1 1.1962 -2.4870 0.3085 41 1 0.6466 -2.2177 1.9846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335758932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:22 Heat of formation + Delta-G solvation = -59.261301 kcal Electronic energy + Delta-G solvation = -18425.930575 eV Core-core repulsion = 15726.253987 eV Total energy + Delta-G solvation = -2699.676589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70572 -36.80639 -35.12630 -32.18210 -30.95826 -28.92301 -27.66581 -27.37605 -27.07117 -24.45727 -21.69989 -21.20820 -19.84000 -18.28811 -17.26218 -15.98056 -15.37619 -14.69999 -14.52883 -14.25598 -14.10328 -13.96336 -13.59914 -13.01037 -12.77678 -12.69200 -12.37377 -12.17370 -11.88358 -11.71567 -11.57375 -11.44703 -11.13159 -11.08377 -10.86142 -10.66755 -10.38003 -10.35613 -10.22704 -10.19566 -9.79561 -8.96694 -8.57738 -8.16758 -7.68197 -6.09381 -4.20265 3.42564 3.51916 3.80777 4.43965 4.57610 4.58431 4.62791 4.77237 5.12515 5.15731 5.25692 5.27648 5.45259 5.52423 5.54503 5.60498 5.71181 5.73413 5.78988 5.80730 5.92882 5.96769 5.98016 6.03520 6.04923 6.13391 6.18869 6.24042 6.31975 6.36639 6.46389 6.56246 6.67366 7.32275 7.47604 7.59180 7.77807 8.33739 8.87690 9.17884 9.56353 11.01407 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047458 B = 0.005320 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.851550 B = 5262.125603 C = 5419.199018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.099 4.099 6 H 0.070 0.930 7 C -0.128 4.128 8 C 0.044 3.956 9 N -0.520 5.520 10 C 0.036 3.964 11 C 0.203 3.797 12 H 0.050 0.950 13 O -0.570 6.570 14 C -0.566 4.566 15 H 0.070 0.930 16 C 0.084 3.916 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.289 1.289 20 H -0.296 1.296 21 H -0.215 1.215 22 C 0.044 3.956 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.353 0.647 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 15.226 -12.949 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.118 4.118 6 H 0.089 0.911 7 C -0.166 4.166 8 C -0.084 4.084 9 N -0.244 5.244 10 C -0.092 4.092 11 C 0.145 3.855 12 H 0.068 0.932 13 O -0.375 6.375 14 C -0.604 4.604 15 H 0.088 0.912 16 C -0.121 4.121 17 N -0.533 5.533 18 Si 0.697 3.303 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.137 1.137 22 C -0.084 4.084 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.199 0.801 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.044 14.933 -13.194 20.031 hybrid contribution -0.078 0.134 0.721 0.737 sum -2.122 15.067 -12.473 19.675 Atomic orbital electron populations 1.21906 0.94760 1.02034 1.01306 1.20430 0.95303 0.95043 0.95005 1.21872 1.01083 0.95487 1.01293 1.22016 1.01059 1.01008 0.96188 1.22420 0.95735 0.96322 0.97317 0.91138 1.22899 0.95189 0.97491 1.01009 1.23016 0.95379 0.92350 0.97637 1.63616 1.04086 1.24785 1.31891 1.23027 1.00349 0.96870 0.88950 1.19661 0.93901 0.86621 0.85296 0.93203 1.86653 1.37573 1.58802 1.54486 1.21553 1.09094 1.19137 1.10579 0.91199 1.24982 0.98318 0.94899 0.93854 1.69963 1.38502 1.22763 1.22036 0.87028 0.82226 0.76709 0.84319 1.21536 1.22301 1.13706 1.22981 0.94082 0.90567 1.00725 0.92910 0.92931 0.92260 0.92587 0.92944 0.92952 0.91663 0.93204 0.92325 0.90220 0.91614 0.93919 0.90483 0.91512 0.95087 0.80110 0.92642 0.90598 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.21 37.16 0.30 -1.03 16 2 C -0.06 -0.57 0.57 -154.51 -0.09 -0.66 16 3 C -0.14 -1.24 8.34 37.16 0.31 -0.93 16 4 C -0.15 -1.45 7.68 37.16 0.29 -1.17 16 5 C -0.10 -1.19 2.31 -88.79 -0.21 -1.39 16 6 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 7 C -0.13 -1.61 5.62 -24.59 -0.14 -1.75 16 8 C 0.04 0.71 5.78 -2.30 -0.01 0.70 16 9 N -0.52 -9.13 5.03 -231.25 -1.16 -10.29 16 10 C 0.04 0.73 4.17 -3.82 -0.02 0.71 16 11 C 0.20 4.86 2.30 -27.88 -0.06 4.80 16 12 H 0.05 1.24 6.92 -51.93 -0.36 0.88 16 13 O -0.57 -13.46 10.01 -35.23 -0.35 -13.81 16 14 C -0.57 -15.98 9.34 -34.44 -0.32 -16.30 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 17 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 18 Si 0.87 22.27 26.99 -169.99 -4.59 17.68 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.21 -5.41 5.31 56.52 0.30 -5.11 16 22 C 0.04 0.64 5.22 -2.84 -0.01 0.62 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.58 6.91 -51.93 -0.36 0.22 16 26 H 0.06 0.49 7.57 -51.93 -0.39 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.72 6.09 -51.93 -0.32 0.41 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.58 6.35 -51.93 -0.33 0.25 16 32 H 0.08 0.97 5.65 -51.92 -0.29 0.68 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.72 7.62 -51.93 -0.40 0.32 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 37 H 0.03 0.64 7.85 -51.93 -0.41 0.23 16 38 H 0.35 7.52 9.04 45.56 0.41 7.93 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.08 1.05 5.41 -51.93 -0.28 0.77 16 41 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -30.84 306.93 -7.33 -38.18 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.57 Total: 4.60 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.06 Total: -14.06 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.39 Total: -37.21 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.35 Total: -13.81 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.59 Total: 17.68 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.84 -7.33 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335758932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.084 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds