Wall clock time and date at job start Sun Mar 29 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 C 1.53008 * 109.46794 * 240.00109 * 2 1 3 5 5 C 1.53000 * 109.46966 * 120.00578 * 2 1 3 6 6 H 1.08994 * 110.76563 * 294.63555 * 5 2 1 7 7 C 1.55146 * 110.70395 * 171.43650 * 5 2 1 8 8 C 1.54910 * 101.65044 * 205.96563 * 7 5 2 9 9 N 1.47838 * 104.79709 * 37.06655 * 8 7 5 10 10 C 1.46906 * 111.00117 * 213.63520 * 9 8 7 11 11 C 1.52999 * 109.46823 * 290.84846 * 10 9 8 12 12 H 1.08994 * 109.47546 * 60.00073 * 11 10 9 13 13 O 1.42899 * 109.47442 * 299.99233 * 11 10 9 14 14 C 1.50705 * 109.46743 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00194 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00222 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00211 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99620 * 359.97438 * 16 14 11 19 19 H 1.48497 * 109.46935 * 90.00503 * 18 16 14 20 20 H 1.48497 * 109.47065 * 210.00224 * 18 16 14 21 21 H 1.48497 * 109.47273 * 330.00289 * 18 16 14 22 22 C 1.47443 * 108.57212 * 335.90911 * 9 8 7 23 23 H 1.09007 * 109.46734 * 299.99954 * 1 2 3 24 24 H 1.09003 * 109.46928 * 59.99233 * 1 2 3 25 25 H 1.08994 * 109.47582 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47059 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47684 * 300.00161 * 3 2 1 28 28 H 1.08998 * 109.46928 * 60.00879 * 3 2 1 29 29 H 1.09000 * 109.47060 * 293.18140 * 4 2 1 30 30 H 1.09002 * 109.46840 * 53.18352 * 4 2 1 31 31 H 1.08998 * 109.46763 * 173.17643 * 4 2 1 32 32 H 1.09008 * 110.98756 * 324.05282 * 7 5 2 33 33 H 1.08993 * 110.99086 * 87.86967 * 7 5 2 34 34 H 1.09002 * 110.36779 * 278.23728 * 8 7 5 35 35 H 1.08997 * 110.37058 * 155.90414 * 8 7 5 36 36 H 1.08994 * 109.47000 * 170.84585 * 10 9 8 37 37 H 1.09001 * 109.46813 * 50.84423 * 10 9 8 38 38 H 0.96700 * 114.00202 * 300.00721 * 13 11 10 39 39 H 0.96996 * 119.99865 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.89237 * 120.39568 * 22 9 8 41 41 H 1.09002 * 109.88473 * 241.42149 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 1 1.7682 -0.1722 2.1506 7 6 3.5758 -0.9279 1.1747 8 6 3.7679 -2.1738 2.0751 9 7 2.5891 -3.0229 1.8013 10 6 2.1769 -3.7558 3.0059 11 6 3.2305 -4.8119 3.3457 12 1 4.1884 -4.3244 3.5270 13 8 3.3596 -5.7246 2.2539 14 6 2.8080 -5.5633 4.5819 15 1 1.8810 -5.3124 5.0759 16 6 3.6054 -6.5704 5.0828 17 7 3.2365 -7.2264 6.1612 18 14 5.2093 -7.0038 4.2287 19 1 6.3104 -6.1871 4.7993 20 1 5.5049 -8.4447 4.4326 21 1 5.0874 -6.7243 2.7754 22 6 1.4974 -2.1649 1.3053 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.7796 -1.7781 -1.1904 30 1 1.5804 -0.2826 -2.1351 31 1 3.1231 -0.6167 -1.3125 32 1 3.8931 -1.1325 0.1521 33 1 4.1057 -0.0667 1.5814 34 1 3.7905 -1.8830 3.1253 35 1 4.6845 -2.6986 1.8060 36 1 1.2191 -4.2433 2.8246 37 1 2.0785 -3.0596 3.8388 38 1 2.5435 -6.1955 2.0362 39 1 3.7973 -7.9351 6.5134 40 1 1.1962 -2.4870 0.3085 41 1 0.6466 -2.2177 1.9846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335758932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:21 Heat of formation + Delta-G solvation = -81.337462 kcal Electronic energy + Delta-G solvation = -18426.887870 eV Core-core repulsion = 15726.253987 eV Total energy + Delta-G solvation = -2700.633883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80941 -38.32482 -36.57023 -34.41728 -32.32237 -30.24615 -29.22420 -28.13869 -27.88449 -26.23043 -22.91525 -22.66054 -21.38909 -19.36930 -19.15942 -17.17411 -16.91813 -16.49567 -16.12043 -15.91713 -15.08593 -14.96725 -14.85519 -14.73151 -14.27407 -13.88170 -13.58852 -13.43355 -13.04347 -12.92272 -12.82271 -12.59288 -12.49710 -12.42203 -12.30461 -12.02031 -11.87712 -11.67480 -11.25992 -11.20892 -11.14901 -11.03350 -10.81452 -10.10073 -9.10164 -8.36924 -6.51715 1.38651 1.44050 1.75605 2.43759 3.01324 3.12308 3.61534 3.70263 3.83770 4.09471 4.16109 4.20827 4.32744 4.39165 4.45054 4.53596 4.57302 4.73456 4.74405 4.84304 4.88491 4.94701 4.96371 5.01292 5.04292 5.12415 5.17189 5.18943 5.28417 5.32637 5.43692 5.43957 5.49228 5.56796 5.65862 6.06691 6.16954 6.23207 6.60861 7.21800 7.37222 8.77442 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047458 B = 0.005320 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.851550 B = 5262.125603 C = 5419.199018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.144 4.144 5 C -0.092 4.092 6 H 0.068 0.932 7 C -0.117 4.117 8 C 0.037 3.963 9 N -0.529 5.529 10 C 0.050 3.950 11 C 0.212 3.788 12 H 0.044 0.956 13 O -0.572 6.572 14 C -0.569 4.569 15 H 0.035 0.965 16 C 0.030 3.970 17 N -0.940 5.940 18 Si 0.939 3.061 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.206 1.206 22 C 0.044 3.956 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.365 0.635 39 H 0.267 0.733 40 H 0.084 0.916 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 16.747 -15.039 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.111 4.111 6 H 0.086 0.914 7 C -0.154 4.154 8 C -0.091 4.091 9 N -0.253 5.253 10 C -0.078 4.078 11 C 0.154 3.846 12 H 0.062 0.938 13 O -0.378 6.378 14 C -0.607 4.607 15 H 0.053 0.947 16 C -0.169 4.169 17 N -0.579 5.579 18 Si 0.763 3.237 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.128 1.128 22 C -0.083 4.083 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.212 0.788 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.473 16.469 -15.299 22.527 hybrid contribution -0.343 -0.328 1.385 1.464 sum -1.815 16.141 -13.915 21.388 Atomic orbital electron populations 1.21906 0.94320 1.01763 1.02008 1.20406 0.95636 0.95566 0.93746 1.21851 1.01210 0.94496 1.01968 1.21998 1.01227 1.00199 0.96698 1.22383 0.95271 0.94914 0.98537 0.91354 1.22858 0.95685 0.96273 1.00611 1.23076 0.94370 0.93698 0.97954 1.63542 1.05539 1.26240 1.29989 1.22682 0.98927 0.96136 0.90069 1.19426 0.94486 0.86975 0.83703 0.93819 1.86584 1.38514 1.58977 1.53756 1.21874 1.07667 1.19290 1.11898 0.94673 1.25836 1.01722 0.94955 0.94425 1.70080 1.40149 1.23845 1.23823 0.85984 0.78034 0.76279 0.83438 1.21152 1.22177 1.12835 1.23033 0.92964 0.91698 1.00637 0.92889 0.91607 0.93033 0.92387 0.91776 0.92845 0.93018 0.91852 0.92226 0.89462 0.89797 0.94944 0.91568 0.91719 0.96006 0.78831 0.92388 0.89805 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.21 71.98 0.59 -1.75 16 2 C -0.05 -0.91 0.57 -52.18 -0.03 -0.94 16 3 C -0.14 -2.01 8.34 71.98 0.60 -1.41 16 4 C -0.14 -2.48 7.68 71.98 0.55 -1.92 16 5 C -0.09 -2.02 2.31 -9.61 -0.02 -2.04 16 6 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 7 C -0.12 -2.66 5.62 31.98 0.18 -2.48 16 8 C 0.04 1.15 5.78 86.78 0.50 1.65 16 9 N -0.53 -18.07 5.03 -885.55 -4.45 -22.53 16 10 C 0.05 2.04 4.17 86.30 0.36 2.40 16 11 C 0.21 10.12 2.30 29.85 0.07 10.19 16 12 H 0.04 2.16 6.92 -2.39 -0.02 2.14 16 13 O -0.57 -26.25 10.01 -148.98 -1.49 -27.74 16 14 C -0.57 -32.72 9.34 25.60 0.24 -32.48 16 15 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 16 C 0.03 1.79 5.47 84.66 0.46 2.25 16 17 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 18 Si 0.94 46.19 26.99 68.60 1.85 48.04 16 19 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 21 H -0.21 -9.80 5.31 99.48 0.53 -9.28 16 22 C 0.04 1.20 5.22 86.65 0.45 1.66 16 23 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.92 6.91 -2.39 -0.02 0.90 16 26 H 0.06 0.83 7.57 -2.38 -0.02 0.81 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 1.03 6.09 -2.39 -0.01 1.02 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.01 6.35 -2.39 -0.02 0.99 16 32 H 0.09 1.89 5.65 -2.38 -0.01 1.88 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.03 1.07 7.62 -2.39 -0.02 1.05 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.61 8.03 -2.39 -0.02 2.60 16 37 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 38 H 0.36 15.07 9.04 -74.06 -0.67 14.40 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.08 2.19 5.41 -2.39 -0.01 2.17 16 41 H 0.04 1.18 7.55 -2.39 -0.02 1.16 16 Total: -1.00 -65.61 306.93 0.30 -65.30 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.14 Total: 20.70 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.96 Total: -24.87 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -4.15 Total: -81.42 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -1.49 Total: -27.74 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.85 Total: 48.04 kcal Total: -65.61 0.30 -65.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335758932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.034 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds