Wall clock time and date at job start Sun Mar 29 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47356 * 2 1 4 4 C 1.53003 * 109.47202 * 240.00417 * 2 1 3 5 5 C 1.53002 * 109.47298 * 120.00009 * 2 1 3 6 6 H 1.08992 * 110.78234 * 298.20480 * 5 2 1 7 7 C 1.54595 * 110.72070 * 61.45612 * 5 2 1 8 8 C 1.53997 * 105.14141 * 140.31654 * 7 5 2 9 9 N 1.47899 * 107.05442 * 1.22316 * 8 7 5 10 10 C 1.46903 * 111.00074 * 214.15547 * 9 8 7 11 11 C 1.53001 * 109.46967 * 294.28677 * 10 9 8 12 12 H 1.08995 * 109.47347 * 57.72427 * 11 10 9 13 13 O 1.42905 * 109.46905 * 297.71997 * 11 10 9 14 14 C 1.50703 * 109.47107 * 177.72586 * 11 10 9 15 15 H 1.08001 * 120.00108 * 359.97438 * 14 11 10 16 16 C 1.37870 * 119.99933 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00370 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 120.00107 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.46768 * 59.99907 * 18 16 14 20 20 H 1.48496 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46869 * 300.00157 * 18 16 14 22 22 C 1.48538 * 105.82424 * 334.66748 * 9 8 7 23 23 H 1.09004 * 109.47301 * 299.99944 * 1 2 3 24 24 H 1.09004 * 109.47050 * 59.99665 * 1 2 3 25 25 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47609 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46813 * 300.00304 * 3 2 1 28 28 H 1.09004 * 109.46870 * 59.99792 * 3 2 1 29 29 H 1.08999 * 109.46971 * 299.99346 * 4 2 1 30 30 H 1.08996 * 109.47485 * 60.00174 * 4 2 1 31 31 H 1.09001 * 109.47224 * 179.97438 * 4 2 1 32 32 H 1.09004 * 110.31185 * 21.39810 * 7 5 2 33 33 H 1.09005 * 110.38874 * 259.27458 * 7 5 2 34 34 H 1.08993 * 109.91849 * 120.57463 * 8 7 5 35 35 H 1.09003 * 109.91560 * 241.87093 * 8 7 5 36 36 H 1.09005 * 109.47116 * 54.28116 * 10 9 8 37 37 H 1.09001 * 109.47407 * 174.28481 * 10 9 8 38 38 H 0.96695 * 114.00326 * 300.00537 * 13 11 10 39 39 H 0.97003 * 120.00400 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.66436 * 280.77699 * 22 9 8 41 41 H 1.08996 * 110.81040 * 157.70495 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.7148 -0.2061 2.1530 7 6 1.5709 -2.1943 1.2602 8 6 2.7741 -2.9956 1.7911 9 7 3.8460 -2.0215 2.0904 10 6 5.1703 -2.5957 1.8176 11 6 5.4357 -3.7491 2.7872 12 1 4.6504 -4.4979 2.6847 13 8 5.4479 -3.2518 4.1269 14 6 6.7701 -4.3741 2.4713 15 1 7.3688 -3.9876 1.6597 16 6 7.2266 -5.4392 3.2182 17 7 6.4977 -5.9096 4.2067 18 14 8.8803 -6.2144 2.8261 19 1 9.9505 -5.1943 2.9647 20 1 9.1379 -7.3338 3.7673 21 1 8.8669 -6.7318 1.4342 22 6 3.5837 -0.8494 1.2164 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 1.3165 -2.5179 0.2509 33 1 0.7139 -2.3150 1.9228 34 1 2.4932 -3.5293 2.6990 35 1 3.1142 -3.7008 1.0328 36 1 5.2011 -2.9677 0.7934 37 1 5.9331 -1.8282 1.9485 38 1 6.1236 -2.5799 4.2909 39 1 6.8187 -6.6593 4.7320 40 1 3.9324 -1.0407 0.2016 41 1 4.0528 0.0476 1.6205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335758933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:24 Heat of formation + Delta-G solvation = -64.072285 kcal Electronic energy + Delta-G solvation = -18354.067196 eV Core-core repulsion = 15654.181987 eV Total energy + Delta-G solvation = -2699.885208 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59419 -36.59414 -34.82979 -32.04171 -30.85255 -28.76167 -27.42886 -27.26575 -27.01447 -24.34583 -21.58799 -21.38428 -19.69065 -18.05699 -16.94726 -15.90983 -15.31929 -14.63053 -14.39548 -14.20261 -14.02657 -13.90447 -13.31423 -13.16762 -12.85068 -12.37176 -12.29717 -11.97972 -11.78176 -11.63875 -11.29686 -11.12381 -11.09060 -10.90586 -10.87355 -10.74204 -10.40097 -10.26188 -10.25558 -10.07164 -9.98236 -8.92987 -8.53096 -8.02557 -7.63584 -5.96501 -4.15147 3.30645 3.35915 3.37529 4.37142 4.51767 4.66623 4.76313 4.91851 5.17969 5.21606 5.30748 5.36490 5.50908 5.55916 5.58546 5.63179 5.75406 5.80610 5.82620 5.92509 6.00948 6.05436 6.13284 6.15532 6.17799 6.22817 6.27792 6.33297 6.44538 6.51382 6.63648 6.65093 6.86840 7.51100 7.69391 7.80759 7.91875 8.25182 8.88898 9.50683 9.67493 11.07596 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.004933 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.616259 B = 5674.478400 C = 5797.357897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.148 4.148 5 C -0.078 4.078 6 H 0.079 0.921 7 C -0.129 4.129 8 C 0.041 3.959 9 N -0.505 5.505 10 C 0.023 3.977 11 C 0.238 3.762 12 H 0.053 0.947 13 O -0.555 6.555 14 C -0.575 4.575 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.033 3.967 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.342 0.658 39 H 0.261 0.739 40 H 0.043 0.957 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 11.273 -8.825 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.198 4.198 4 C -0.205 4.205 5 C -0.097 4.097 6 H 0.097 0.903 7 C -0.166 4.166 8 C -0.087 4.087 9 N -0.229 5.229 10 C -0.105 4.105 11 C 0.180 3.820 12 H 0.071 0.929 13 O -0.356 6.356 14 C -0.614 4.614 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.494 5.494 18 Si 0.716 3.284 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.095 4.095 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.185 0.815 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.551 10.830 -8.057 17.132 hybrid contribution 1.532 -0.411 -1.222 2.002 sum -9.019 10.418 -9.279 16.613 Atomic orbital electron populations 1.21867 0.94742 1.01801 1.01306 1.20488 0.95325 0.95291 0.95044 1.21872 1.01271 0.95319 1.01322 1.22046 1.01500 1.00386 0.96585 1.22076 0.95144 0.95419 0.97091 0.90275 1.22582 0.98293 0.94899 1.00874 1.22783 0.91209 0.94754 0.99995 1.64789 1.02585 1.05577 1.49963 1.23230 0.88904 0.99303 0.99073 1.19288 0.95822 0.88185 0.78709 0.92912 1.86557 1.57930 1.59506 1.31651 1.21644 1.05187 1.16982 1.17582 0.92858 1.25018 0.96966 0.96111 0.94480 1.70077 1.36930 1.24130 1.18312 0.86748 0.84527 0.78969 0.78175 1.20135 1.21172 1.20244 1.23383 0.94899 0.95500 0.95668 0.92754 0.93059 0.92511 0.92464 0.93049 0.92703 0.92307 0.93064 0.92167 0.91479 0.91659 0.90422 0.94173 0.95562 0.92010 0.81495 0.92965 0.93878 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.26 37.15 0.31 -1.00 16 2 C -0.06 -0.64 0.57 -154.51 -0.09 -0.73 16 3 C -0.14 -1.36 8.31 37.16 0.31 -1.05 16 4 C -0.15 -1.57 7.86 37.16 0.29 -1.28 16 5 C -0.08 -1.01 2.42 -88.76 -0.21 -1.22 16 6 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 7 C -0.13 -1.76 5.32 -25.37 -0.13 -1.89 16 8 C 0.04 0.72 5.55 -2.75 -0.02 0.71 16 9 N -0.51 -9.59 5.20 -230.44 -1.20 -10.79 16 10 C 0.02 0.49 4.33 -3.82 -0.02 0.48 16 11 C 0.24 6.21 2.79 -27.88 -0.08 6.13 16 12 H 0.05 1.51 7.30 -51.93 -0.38 1.13 16 13 O -0.55 -14.96 12.63 -35.23 -0.45 -15.40 16 14 C -0.58 -16.12 8.76 -34.44 -0.30 -16.42 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 17 N -0.86 -25.86 12.84 55.43 0.71 -25.14 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.03 0.51 5.00 -1.89 -0.01 0.50 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.53 7.16 -51.93 -0.37 0.16 16 26 H 0.06 0.58 7.37 -51.93 -0.38 0.19 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.64 6.08 -51.93 -0.32 0.32 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.69 6.03 -51.93 -0.31 0.37 16 32 H 0.07 0.84 5.50 -51.93 -0.29 0.55 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.04 0.74 7.64 -51.93 -0.40 0.34 16 36 H 0.03 0.56 7.94 -51.93 -0.41 0.15 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.34 8.30 9.04 45.56 0.41 8.71 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.04 0.65 5.53 -51.93 -0.29 0.36 16 41 H 0.07 1.06 8.03 -51.93 -0.42 0.65 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -30.44 313.03 -7.78 -38.21 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.49 Total: 5.62 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.05 Total: -13.59 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.49 Total: -35.94 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.45 Total: -15.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.44 -7.78 -38.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335758933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.858 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds