Wall clock time and date at job start Sun Mar 29 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47356 * 2 1 4 4 C 1.53003 * 109.47202 * 240.00417 * 2 1 3 5 5 C 1.53002 * 109.47298 * 120.00009 * 2 1 3 6 6 H 1.08992 * 110.78234 * 298.20480 * 5 2 1 7 7 C 1.54595 * 110.72070 * 61.45612 * 5 2 1 8 8 C 1.53997 * 105.14141 * 140.31654 * 7 5 2 9 9 N 1.47899 * 107.05442 * 1.22316 * 8 7 5 10 10 C 1.46903 * 111.00074 * 214.15547 * 9 8 7 11 11 C 1.53001 * 109.46967 * 294.28677 * 10 9 8 12 12 H 1.08995 * 109.47347 * 57.72427 * 11 10 9 13 13 O 1.42905 * 109.46905 * 297.71997 * 11 10 9 14 14 C 1.50703 * 109.47107 * 177.72586 * 11 10 9 15 15 H 1.08001 * 120.00108 * 359.97438 * 14 11 10 16 16 C 1.37870 * 119.99933 * 179.97438 * 14 11 10 17 17 N 1.31518 * 120.00370 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 120.00107 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.46768 * 59.99907 * 18 16 14 20 20 H 1.48496 * 109.47207 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46869 * 300.00157 * 18 16 14 22 22 C 1.48538 * 105.82424 * 334.66748 * 9 8 7 23 23 H 1.09004 * 109.47301 * 299.99944 * 1 2 3 24 24 H 1.09004 * 109.47050 * 59.99665 * 1 2 3 25 25 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47609 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46813 * 300.00304 * 3 2 1 28 28 H 1.09004 * 109.46870 * 59.99792 * 3 2 1 29 29 H 1.08999 * 109.46971 * 299.99346 * 4 2 1 30 30 H 1.08996 * 109.47485 * 60.00174 * 4 2 1 31 31 H 1.09001 * 109.47224 * 179.97438 * 4 2 1 32 32 H 1.09004 * 110.31185 * 21.39810 * 7 5 2 33 33 H 1.09005 * 110.38874 * 259.27458 * 7 5 2 34 34 H 1.08993 * 109.91849 * 120.57463 * 8 7 5 35 35 H 1.09003 * 109.91560 * 241.87093 * 8 7 5 36 36 H 1.09005 * 109.47116 * 54.28116 * 10 9 8 37 37 H 1.09001 * 109.47407 * 174.28481 * 10 9 8 38 38 H 0.96695 * 114.00326 * 300.00537 * 13 11 10 39 39 H 0.97003 * 120.00400 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.66436 * 280.77699 * 22 9 8 41 41 H 1.08996 * 110.81040 * 157.70495 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.7148 -0.2061 2.1530 7 6 1.5709 -2.1943 1.2602 8 6 2.7741 -2.9956 1.7911 9 7 3.8460 -2.0215 2.0904 10 6 5.1703 -2.5957 1.8176 11 6 5.4357 -3.7491 2.7872 12 1 4.6504 -4.4979 2.6847 13 8 5.4479 -3.2518 4.1269 14 6 6.7701 -4.3741 2.4713 15 1 7.3688 -3.9876 1.6597 16 6 7.2266 -5.4392 3.2182 17 7 6.4977 -5.9096 4.2067 18 14 8.8803 -6.2144 2.8261 19 1 9.9505 -5.1943 2.9647 20 1 9.1379 -7.3338 3.7673 21 1 8.8669 -6.7318 1.4342 22 6 3.5837 -0.8494 1.2164 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2073 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 1.3165 -2.5179 0.2509 33 1 0.7139 -2.3150 1.9228 34 1 2.4932 -3.5293 2.6990 35 1 3.1142 -3.7008 1.0328 36 1 5.2011 -2.9677 0.7934 37 1 5.9331 -1.8282 1.9485 38 1 6.1236 -2.5799 4.2909 39 1 6.8187 -6.6593 4.7320 40 1 3.9324 -1.0407 0.2016 41 1 4.0528 0.0476 1.6205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335758933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:23 Heat of formation + Delta-G solvation = -85.707814 kcal Electronic energy + Delta-G solvation = -18355.005382 eV Core-core repulsion = 15654.181987 eV Total energy + Delta-G solvation = -2700.823395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77877 -38.16619 -36.46482 -34.23765 -32.31832 -30.11105 -29.01514 -28.18988 -27.87665 -26.19648 -23.14283 -22.68416 -21.28904 -19.12749 -18.96982 -17.13755 -16.70784 -16.63492 -16.19588 -15.69301 -15.36753 -15.00548 -14.65993 -14.48996 -14.22951 -13.70082 -13.67701 -13.15147 -12.95803 -12.87513 -12.78177 -12.67010 -12.46648 -12.36317 -12.23727 -12.12057 -11.99861 -11.77990 -11.27654 -11.23965 -11.11079 -10.98853 -10.70500 -10.08516 -9.18024 -8.14005 -6.41166 1.39568 1.41779 1.50063 2.37827 3.11002 3.16759 3.64705 3.74211 3.86894 4.13724 4.15768 4.25461 4.35827 4.42143 4.48894 4.55367 4.62587 4.72009 4.78784 4.82225 4.86708 4.92691 5.00529 5.02686 5.06377 5.13638 5.16524 5.17409 5.25351 5.32269 5.42807 5.56910 5.57744 5.62140 5.74145 5.99075 6.14858 6.23135 6.72548 7.33350 7.60307 8.90491 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047558 B = 0.004933 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.616259 B = 5674.478400 C = 5797.357897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.148 4.148 5 C -0.070 4.070 6 H 0.077 0.923 7 C -0.118 4.118 8 C 0.039 3.961 9 N -0.522 5.522 10 C 0.042 3.958 11 C 0.239 3.761 12 H 0.017 0.983 13 O -0.572 6.572 14 C -0.592 4.592 15 H 0.059 0.941 16 C 0.026 3.974 17 N -0.900 5.900 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.268 1.268 22 C 0.034 3.966 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.026 0.974 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.352 0.648 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 12.561 -10.262 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.197 4.197 4 C -0.205 4.205 5 C -0.089 4.089 6 H 0.095 0.905 7 C -0.156 4.156 8 C -0.089 4.089 9 N -0.246 5.246 10 C -0.087 4.087 11 C 0.181 3.819 12 H 0.034 0.966 13 O -0.375 6.375 14 C -0.630 4.630 15 H 0.077 0.923 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.786 3.214 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.193 1.193 22 C -0.093 4.093 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.197 0.803 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.652 12.140 -9.509 18.743 hybrid contribution 1.526 -0.794 -0.754 1.878 sum -9.126 11.346 -10.263 17.815 Atomic orbital electron populations 1.21851 0.93475 1.02029 1.02191 1.20459 0.96256 0.95456 0.93468 1.21866 1.00879 0.94729 1.02226 1.22045 1.00775 1.00360 0.97330 1.22053 0.93244 0.95027 0.98556 0.90456 1.22537 0.96595 0.94783 1.01711 1.22750 0.92712 0.94955 0.98504 1.64686 1.01553 1.06747 1.51631 1.22823 0.90738 0.97761 0.97359 1.19139 0.94156 0.89212 0.79409 0.96566 1.86498 1.58474 1.60055 1.32455 1.22040 1.05967 1.17355 1.17671 0.92293 1.25922 1.00987 0.96585 0.94138 1.70228 1.39075 1.24824 1.19604 0.85583 0.79572 0.78056 0.78188 1.19038 1.20879 1.19312 1.23457 0.96855 0.93803 0.95170 0.92432 0.91681 0.92640 0.93111 0.91625 0.92382 0.92783 0.91431 0.93265 0.89909 0.90607 0.93145 0.95511 0.95756 0.91433 0.80350 0.92945 0.93337 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.26 71.98 0.59 -1.57 16 2 C -0.06 -1.03 0.57 -52.18 -0.03 -1.06 16 3 C -0.14 -2.32 8.31 71.98 0.60 -1.72 16 4 C -0.15 -2.78 7.86 71.98 0.57 -2.21 16 5 C -0.07 -1.68 2.42 -9.59 -0.02 -1.71 16 6 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 7 C -0.12 -3.12 5.32 31.47 0.17 -2.95 16 8 C 0.04 1.42 5.55 86.45 0.48 1.90 16 9 N -0.52 -19.96 5.20 -882.99 -4.59 -24.56 16 10 C 0.04 1.81 4.33 86.30 0.37 2.19 16 11 C 0.24 12.82 2.79 29.85 0.08 12.90 16 12 H 0.02 0.99 7.30 -2.39 -0.02 0.98 16 13 O -0.57 -31.66 12.63 -148.98 -1.88 -33.54 16 14 C -0.59 -33.53 8.76 25.60 0.22 -33.31 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 16 C 0.03 1.49 5.40 84.65 0.46 1.95 16 17 N -0.90 -55.31 12.84 21.45 0.28 -55.04 16 18 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 C 0.03 1.01 5.00 86.65 0.43 1.44 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.89 7.16 -2.39 -0.02 0.87 16 26 H 0.05 0.91 7.37 -2.39 -0.02 0.89 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.06 6.08 -2.39 -0.01 1.04 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.03 6.03 -2.39 -0.01 1.01 16 32 H 0.08 1.94 5.50 -2.39 -0.01 1.92 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.03 1.02 7.64 -2.39 -0.02 1.00 16 36 H 0.02 1.05 7.94 -2.38 -0.02 1.03 16 37 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.35 17.43 9.04 -74.06 -0.67 16.76 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.05 1.39 5.53 -2.39 -0.01 1.38 16 41 H 0.08 2.17 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -65.65 313.03 0.07 -65.59 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.32 Total: 25.70 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 3.92 Total: -24.15 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -4.32 Total: -79.59 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.88 Total: -33.54 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.65 0.07 -65.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335758933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.122 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds