Wall clock time and date at job start Sun Mar 29 2020 22:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47279 * 2 1 4 4 C 1.52995 * 109.47151 * 239.99734 * 2 1 3 5 5 C 1.52999 * 109.46694 * 119.99938 * 2 1 3 6 6 C 1.53007 * 109.47275 * 60.00093 * 5 2 1 7 7 C 1.52994 * 109.47046 * 179.97438 * 6 5 2 8 8 N 1.46904 * 109.47076 * 179.97438 * 7 6 5 9 9 C 1.47960 * 110.99975 * 190.00073 * 8 7 6 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56485 * 8 7 6 21 21 H 1.08999 * 109.46937 * 300.00651 * 1 2 3 22 22 H 1.09001 * 109.46867 * 59.99805 * 1 2 3 23 23 H 1.08995 * 109.47470 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47179 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47330 * 299.99912 * 3 2 1 26 26 H 1.08999 * 109.47667 * 59.99796 * 3 2 1 27 27 H 1.09002 * 109.47194 * 300.00710 * 4 2 1 28 28 H 1.09000 * 109.47374 * 60.00361 * 4 2 1 29 29 H 1.09001 * 109.47554 * 180.02562 * 4 2 1 30 30 H 1.08994 * 109.47401 * 299.99955 * 5 2 1 31 31 H 1.09008 * 109.47094 * 179.97438 * 5 2 1 32 32 H 1.08994 * 109.47018 * 59.99628 * 6 5 2 33 33 H 1.08995 * 109.46394 * 299.99713 * 6 5 2 34 34 H 1.09003 * 109.47110 * 59.99953 * 7 6 5 35 35 H 1.09005 * 109.47409 * 300.00082 * 7 6 5 36 36 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 37 37 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 38 38 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 40 40 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 41 41 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 6 1.5299 -2.1638 1.2493 7 6 2.0403 -2.8852 2.4982 8 7 1.5501 -4.2700 2.4985 9 6 1.8193 -4.9275 3.7964 10 6 2.2337 -6.1583 2.9701 11 8 1.1598 -7.0643 2.7094 12 6 3.4708 -6.8469 3.4862 13 1 3.9590 -6.4830 4.3782 14 6 3.9795 -7.9415 2.8197 15 7 3.3847 -8.3849 1.7338 16 14 5.5133 -8.7945 3.4592 17 1 5.8521 -9.9353 2.5708 18 1 6.6430 -7.8310 3.4809 19 1 5.2639 -9.2960 4.8345 20 6 2.5073 -5.1741 1.8184 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2492 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7217 -1.2490 30 1 1.6766 -0.2075 2.1392 31 1 3.1300 -0.7217 1.2491 32 1 1.8932 -2.6776 0.3593 33 1 0.4399 -2.1637 1.2493 34 1 1.6773 -2.3714 3.3884 35 1 3.1303 -2.8852 2.4979 36 1 0.9269 -5.0854 4.4021 37 1 2.6393 -4.4782 4.3566 38 1 1.4094 -7.8242 2.1661 39 1 3.7428 -9.1548 1.2647 40 1 3.5293 -4.7960 1.7974 41 1 2.1636 -5.5287 0.8467 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473413691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:37 Heat of formation + Delta-G solvation = -44.862043 kcal Electronic energy + Delta-G solvation = -17955.802635 eV Core-core repulsion = 15256.750445 eV Total energy + Delta-G solvation = -2699.052190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02601 -37.92341 -34.42767 -32.11640 -31.87305 -27.80352 -27.30929 -27.27625 -25.54531 -25.01944 -22.82431 -20.61683 -18.68736 -18.42481 -17.15912 -15.33913 -15.11244 -15.00813 -14.69407 -14.27245 -14.11861 -13.82570 -13.48462 -12.96969 -12.56433 -12.27276 -12.00323 -11.84560 -11.70823 -11.60330 -11.49319 -11.29073 -11.08567 -10.93282 -10.85787 -10.60767 -10.41995 -10.36557 -10.19443 -9.98216 -9.84766 -9.22350 -8.60985 -8.16516 -7.73084 -6.23230 -4.33166 3.22199 3.27531 3.30074 4.27390 4.63064 4.81394 4.82965 4.96227 5.04067 5.31295 5.46010 5.50990 5.59423 5.67337 5.73538 5.75577 5.80381 5.85848 5.94109 5.99109 6.05011 6.07413 6.10284 6.18159 6.28363 6.30122 6.35972 6.41203 6.46710 6.62313 6.71056 6.75195 7.09065 7.29172 7.41088 7.78552 8.03384 8.09142 8.68285 9.36661 9.65828 10.82574 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037409 B = 0.004679 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.306202 B = 5982.937145 C = 6162.419714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.107 4.107 6 C -0.111 4.111 7 C 0.019 3.981 8 N -0.481 5.481 9 C 0.008 3.992 10 C 0.243 3.757 11 O -0.572 6.572 12 C -0.539 4.539 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.902 3.098 17 H -0.285 1.285 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.010 4.010 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.387 0.613 39 H 0.271 0.729 40 H 0.058 0.942 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 14.141 -3.487 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.201 4.201 5 C -0.145 4.145 6 C -0.148 4.148 7 C -0.110 4.110 8 N -0.204 5.204 9 C -0.120 4.120 10 C 0.202 3.798 11 O -0.383 6.383 12 C -0.577 4.577 13 H 0.082 0.918 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.729 3.271 17 H -0.210 1.210 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.139 4.139 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.605 14.494 -3.516 15.140 hybrid contribution 2.112 -0.720 0.197 2.240 sum -0.493 13.774 -3.319 14.177 Atomic orbital electron populations 1.21930 0.94736 1.02288 1.01110 1.20532 0.95686 0.95004 0.95738 1.21872 1.00826 0.95737 1.01330 1.21936 1.00860 1.00828 0.96526 1.21631 1.00305 0.95884 0.96726 1.21562 1.01264 0.93768 0.98232 1.22637 0.97599 0.92889 0.97837 1.68500 1.43288 0.99728 1.08849 1.24086 0.99310 0.95757 0.92883 1.19762 0.85230 0.85746 0.89087 1.86042 1.37344 1.39414 1.75471 1.21632 1.10292 1.13956 1.11844 0.91808 1.25050 0.97402 0.96386 0.94214 1.69425 1.40923 1.25721 1.17728 0.86493 0.82618 0.78984 0.78976 1.21011 1.20109 1.19962 1.24743 0.93121 0.95299 1.00785 0.92906 0.93199 0.91889 0.92853 0.92979 0.92885 0.91914 0.93168 0.92853 0.92305 0.92323 0.91874 0.91376 0.92344 0.94687 0.90867 0.91950 0.75896 0.91921 0.92407 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.12 37.16 0.30 -1.20 16 2 C -0.07 -0.75 0.80 -154.51 -0.12 -0.87 16 3 C -0.14 -1.32 8.47 37.15 0.31 -1.00 16 4 C -0.14 -1.58 8.12 37.16 0.30 -1.28 16 5 C -0.11 -1.31 4.27 -26.73 -0.11 -1.43 16 6 C -0.11 -1.65 4.82 -26.73 -0.13 -1.78 16 7 C 0.02 0.34 4.80 -3.83 -0.02 0.32 16 8 N -0.48 -10.35 6.16 -238.02 -1.47 -11.81 16 9 C 0.01 0.19 7.34 -2.76 -0.02 0.17 16 10 C 0.24 6.30 1.40 -90.83 -0.13 6.17 16 11 O -0.57 -15.77 13.48 -35.23 -0.48 -16.24 16 12 C -0.54 -14.63 8.61 -34.44 -0.30 -14.92 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 15 N -0.90 -24.34 11.20 55.43 0.62 -23.72 16 16 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.01 -0.25 7.37 -2.63 -0.02 -0.27 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 1.01 6.43 -51.93 -0.33 0.67 16 33 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 34 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.03 0.62 7.39 -51.93 -0.38 0.24 16 36 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.06 1.32 7.88 -51.93 -0.41 0.91 16 38 H 0.39 10.78 6.60 45.56 0.30 11.08 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.06 1.36 7.44 -51.93 -0.39 0.98 16 41 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -27.51 319.99 -8.37 -35.88 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.83 Total: 9.81 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.03 Total: -14.28 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.85 Total: -35.53 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.48 Total: -16.24 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.51 -8.37 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473413691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.981 kcal (2) G-P(sol) polarization free energy of solvation -27.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds