Wall clock time and date at job start Sun Mar 29 2020 23:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46864 * 2 1 4 4 H 1.08996 * 109.46624 * 175.36841 * 3 2 1 5 5 C 1.50697 * 109.47401 * 55.36360 * 3 2 1 6 6 H 1.07996 * 120.00323 * 239.99797 * 5 3 2 7 7 C 1.37882 * 119.99961 * 60.00036 * 5 3 2 8 8 N 1.31521 * 119.99695 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00270 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47118 * 89.99692 * 9 7 5 11 11 H 1.48492 * 109.47264 * 209.99940 * 9 7 5 12 12 H 1.48504 * 109.47118 * 330.00258 * 9 7 5 13 13 N 1.46900 * 109.47098 * 295.36330 * 3 2 1 14 14 C 1.46900 * 111.00153 * 272.18303 * 13 3 2 15 15 C 1.52997 * 109.47171 * 185.76412 * 14 13 3 16 16 C 1.52992 * 109.48260 * 304.99885 * 15 14 13 17 17 C 1.53101 * 109.47924 * 184.97287 * 15 14 13 18 18 C 1.53178 * 109.15923 * 182.40728 * 17 15 14 19 19 C 1.53179 * 109.03352 * 56.98817 * 18 17 15 20 20 C 1.53092 * 109.16189 * 303.01335 * 19 18 17 21 21 O 1.42894 * 109.42474 * 57.60530 * 20 19 18 22 22 H 1.08994 * 109.47460 * 65.50375 * 1 2 3 23 23 H 1.09001 * 109.47138 * 185.50440 * 1 2 3 24 24 H 1.09004 * 109.47185 * 305.50069 * 1 2 3 25 25 H 1.08994 * 109.46779 * 239.99605 * 2 1 3 26 26 H 1.09002 * 109.46835 * 119.99606 * 2 1 3 27 27 H 0.97002 * 119.99625 * 179.97438 * 8 7 5 28 28 H 1.00904 * 110.99777 * 36.13654 * 13 3 2 29 29 H 1.09002 * 109.46938 * 305.76623 * 14 13 3 30 30 H 1.09000 * 109.47070 * 65.76072 * 14 13 3 31 31 H 1.08998 * 109.47187 * 59.99834 * 16 15 14 32 32 H 1.09008 * 109.47355 * 179.97438 * 16 15 14 33 33 H 1.08994 * 109.47427 * 299.99738 * 16 15 14 34 34 H 1.08999 * 109.52225 * 302.31743 * 17 15 14 35 35 H 1.09004 * 109.51516 * 62.50689 * 17 15 14 36 36 H 1.09003 * 109.53536 * 176.84879 * 18 17 15 37 37 H 1.08998 * 109.55014 * 297.02760 * 18 17 15 38 38 H 1.09000 * 109.52685 * 62.91939 * 19 18 17 39 39 H 1.09010 * 109.52192 * 183.10825 * 19 18 17 40 40 H 1.08999 * 109.47756 * 177.59893 * 20 19 18 41 41 H 1.09000 * 109.47885 * 297.61306 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1268 1.4436 0.0830 5 6 1.4461 2.1853 1.1690 6 1 0.8355 3.0598 0.9993 7 6 1.6823 1.7486 2.4553 8 7 2.4256 0.6834 2.6619 9 14 0.9468 2.6696 3.9044 10 1 -0.3892 2.1050 4.2233 11 1 1.8379 2.5294 5.0839 12 1 0.8068 4.1069 3.5578 13 7 1.6438 2.1019 -1.2515 14 6 2.6459 1.8816 -2.3028 15 6 2.2731 2.6979 -3.5419 16 6 0.8482 2.3469 -3.9744 17 6 3.2462 2.3738 -4.6786 18 6 2.9037 3.2386 -5.8956 19 6 2.9549 4.7148 -5.4897 20 6 1.9931 4.9485 -4.3217 21 8 2.3484 4.0915 -3.2349 22 1 -0.3634 0.4261 -0.9351 23 1 -0.3633 -1.0229 0.0986 24 1 -0.3634 0.5968 0.8367 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.5921 0.3763 3.5669 28 1 0.7316 1.7914 -1.5507 29 1 3.6257 2.1951 -1.9423 30 1 2.6754 0.8229 -2.5604 31 1 0.1555 2.5781 -3.1652 32 1 0.5826 2.9289 -4.8570 33 1 0.7911 1.2841 -4.2090 34 1 4.2659 2.5854 -4.3566 35 1 3.1582 1.3202 -4.9440 36 1 3.6272 3.0534 -6.6896 37 1 1.9029 2.9908 -6.2491 38 1 3.9686 4.9737 -5.1842 39 1 2.6586 5.3356 -6.3354 40 1 2.0569 5.9882 -4.0008 41 1 0.9742 4.7283 -4.6403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560732352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:48 Heat of formation + Delta-G solvation = -61.346774 kcal Electronic energy + Delta-G solvation = -18628.963370 eV Core-core repulsion = 15929.196348 eV Total energy + Delta-G solvation = -2699.767021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72879 -36.39770 -33.48706 -33.40389 -31.55370 -29.89158 -27.95439 -26.51763 -24.83045 -23.77210 -23.06438 -21.19799 -19.20661 -18.93900 -16.43995 -15.97475 -15.48547 -14.93596 -14.52557 -14.47143 -14.30921 -13.44737 -13.35873 -12.90806 -12.51481 -12.28248 -12.27998 -12.19331 -11.89967 -11.57417 -11.41799 -10.91766 -10.89545 -10.83090 -10.72497 -10.49260 -10.45698 -9.97347 -9.91080 -9.56473 -9.47094 -9.05724 -8.85814 -8.26269 -7.04463 -5.89317 -3.89786 3.37890 3.44482 3.50120 4.09963 4.51283 4.78376 4.86340 4.90193 5.05786 5.25366 5.38130 5.42205 5.49513 5.56619 5.65485 5.71933 5.82896 5.87554 5.96696 6.01159 6.12081 6.15421 6.23487 6.28330 6.38441 6.41525 6.44362 6.60899 6.67021 6.93531 7.33659 7.36916 7.56751 7.70981 7.76928 7.99472 8.38720 8.68253 8.73480 9.16586 9.73454 11.17801 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.005921 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.931774 B = 4727.448222 C = 5074.096344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.482 4.482 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.075 3.925 15 C 0.122 3.878 16 C -0.180 4.180 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.156 4.156 20 C 0.054 3.946 21 O -0.348 6.348 22 H 0.026 0.974 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.009 0.991 26 H 0.093 0.907 27 H 0.258 0.742 28 H 0.324 0.676 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 2.889 -15.522 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.521 4.521 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.306 5.306 14 C -0.055 4.055 15 C 0.082 3.918 16 C -0.237 4.237 17 C -0.183 4.183 18 C -0.158 4.158 19 C -0.193 4.193 20 C -0.023 4.023 21 O -0.266 6.266 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.261 3.469 -14.987 15.386 hybrid contribution -0.554 -0.675 0.263 0.912 sum -0.815 2.794 -14.725 15.010 Atomic orbital electron populations 1.21601 0.97770 0.98644 1.00705 1.22118 0.94935 1.01279 1.00172 1.19221 0.95821 0.88361 0.85925 0.95110 1.21100 1.30127 1.11282 0.89596 0.92006 1.24919 0.95654 0.95228 0.98718 1.69887 1.39146 1.24081 1.20788 0.86581 0.78766 0.80404 0.82158 1.20955 1.21515 1.19915 1.60749 1.03311 1.63019 1.03528 1.21836 0.97989 0.94753 0.90963 1.21515 0.93476 0.82621 0.94200 1.22432 0.98010 1.01388 1.01874 1.22181 1.00518 0.99919 0.95657 1.21594 1.01640 0.95011 0.97582 1.22197 1.01364 0.96788 0.98983 1.22523 0.96755 0.95064 0.87953 1.88186 1.88649 1.14967 1.34802 0.95495 0.95827 0.91200 0.97258 0.88882 0.93256 0.85659 0.91060 0.95363 0.90762 0.92543 0.92226 0.91138 0.91278 0.92055 0.91818 0.91277 0.91572 0.89447 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.41 37.16 0.35 -2.45 16 2 C -0.15 -3.45 5.53 -26.73 -0.15 -3.60 16 3 C 0.21 5.42 2.34 -68.87 -0.16 5.26 16 4 H 0.03 0.87 7.66 -51.93 -0.40 0.47 16 5 C -0.48 -13.37 7.27 -34.44 -0.25 -13.62 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.05 1.52 5.30 -17.81 -0.09 1.43 16 8 N -0.90 -25.78 11.37 55.43 0.63 -25.15 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.67 -14.71 6.00 -107.96 -0.65 -15.36 16 14 C 0.07 1.40 4.77 -3.83 -0.02 1.38 16 15 C 0.12 1.89 0.88 -90.57 -0.08 1.81 16 16 C -0.18 -2.50 7.47 37.15 0.28 -2.22 16 17 C -0.14 -1.84 4.92 -26.59 -0.13 -1.97 16 18 C -0.12 -1.29 5.72 -26.55 -0.15 -1.44 16 19 C -0.16 -1.68 6.14 -26.59 -0.16 -1.85 16 20 C 0.05 0.71 6.51 37.21 0.24 0.95 16 21 O -0.35 -6.00 10.18 -35.23 -0.36 -6.36 16 22 H 0.03 0.52 6.62 -51.93 -0.34 0.17 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.66 6.87 -51.93 -0.36 1.30 16 25 H 0.01 0.19 7.67 -51.93 -0.40 -0.20 16 26 H 0.09 2.48 6.21 -51.93 -0.32 2.15 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.32 6.69 4.77 -39.29 -0.19 6.50 16 29 H 0.07 1.43 7.91 -51.93 -0.41 1.02 16 30 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 31 H 0.07 1.15 6.65 -51.93 -0.35 0.81 16 32 H 0.06 0.68 4.98 -51.92 -0.26 0.42 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.65 6.62 -51.93 -0.34 0.30 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.58 6.34 -51.93 -0.33 0.25 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -29.04 305.90 -8.13 -37.18 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.02 Total: 4.64 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -0.33 Total: -16.32 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.02 Total: -40.51 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.36 Total: -6.36 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.04 -8.13 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560732352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds