Wall clock time and date at job start Sun Mar 29 2020 23:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 H 1.09004 * 109.47207 * 185.67650 * 3 2 1 5 5 C 1.50700 * 109.47374 * 305.67643 * 3 2 1 6 6 H 1.07996 * 120.00345 * 116.76220 * 5 3 2 7 7 C 1.37879 * 119.99851 * 296.76662 * 5 3 2 8 8 N 1.31521 * 120.00075 * 352.24560 * 7 5 3 9 9 Si 1.86793 * 120.00198 * 172.25111 * 7 5 3 10 10 H 1.48494 * 109.47454 * 179.97438 * 9 7 5 11 11 H 1.48509 * 109.46973 * 299.99920 * 9 7 5 12 12 H 1.48506 * 109.47250 * 59.99478 * 9 7 5 13 13 N 1.46897 * 109.47277 * 65.67531 * 3 2 1 14 14 C 1.46908 * 111.00112 * 87.01764 * 13 3 2 15 15 C 1.52997 * 109.46967 * 182.71516 * 14 13 3 16 16 C 1.52993 * 109.48406 * 60.00424 * 15 14 13 17 17 C 1.53101 * 109.47612 * 180.02562 * 15 14 13 18 18 C 1.53179 * 109.15977 * 177.59087 * 17 15 14 19 19 C 1.53176 * 109.03710 * 303.01580 * 18 17 15 20 20 C 1.53094 * 109.16328 * 56.98598 * 19 18 17 21 21 O 1.42904 * 109.48072 * 299.97444 * 15 14 13 22 22 H 1.09001 * 109.47030 * 183.31077 * 1 2 3 23 23 H 1.08999 * 109.47101 * 303.30980 * 1 2 3 24 24 H 1.09004 * 109.47209 * 63.31404 * 1 2 3 25 25 H 1.08995 * 109.47318 * 240.00035 * 2 1 3 26 26 H 1.09006 * 109.46908 * 119.99674 * 2 1 3 27 27 H 0.96999 * 119.99535 * 355.81484 * 8 7 5 28 28 H 1.00897 * 111.00307 * 323.06354 * 13 3 2 29 29 H 1.08999 * 109.46789 * 302.71550 * 14 13 3 30 30 H 1.09001 * 109.46708 * 62.71360 * 14 13 3 31 31 H 1.09001 * 109.47482 * 59.99533 * 16 15 14 32 32 H 1.09001 * 109.47381 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46896 * 299.99278 * 16 15 14 34 34 H 1.08994 * 109.52333 * 297.49780 * 17 15 14 35 35 H 1.08998 * 109.52029 * 57.68717 * 17 15 14 36 36 H 1.08996 * 109.54542 * 62.88741 * 18 17 15 37 37 H 1.09000 * 109.53997 * 183.06586 * 18 17 15 38 38 H 1.09001 * 109.52142 * 176.88553 * 19 18 17 39 39 H 1.08994 * 109.52582 * 297.08153 * 19 18 17 40 40 H 1.09004 * 109.48044 * 62.36602 * 20 19 18 41 41 H 1.09000 * 109.48281 * 182.39687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1253 1.4443 -0.1017 5 6 1.4262 2.1923 -1.1541 6 1 0.7762 3.0342 -0.9667 7 6 1.6944 1.8035 -2.4495 8 7 2.6011 0.8803 -2.6846 9 14 0.7701 2.5881 -3.8705 10 1 1.2400 2.0011 -5.1510 11 1 -0.6850 2.3356 -3.7142 12 1 1.0207 4.0519 -3.8761 13 7 1.6653 2.0943 1.2620 14 6 2.6761 1.8518 2.3002 15 6 2.2194 2.4874 3.6148 16 6 0.8880 1.8687 4.0453 17 6 3.2730 2.2353 4.6967 18 6 2.8375 2.9254 5.9930 19 6 2.6311 4.4183 5.7193 20 6 1.6023 4.5861 4.5980 21 8 2.0539 3.8949 3.4315 22 1 -0.3633 -1.0260 0.0594 23 1 -0.3633 0.5644 0.8588 24 1 -0.3634 0.4615 -0.9182 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.1238 0.5165 -1.9530 28 1 0.7527 1.7919 1.5682 29 1 2.8027 0.7783 2.4402 30 1 3.6247 2.2927 1.9936 31 1 1.0145 0.7952 4.1854 32 1 0.5630 2.3213 4.9821 33 1 0.1379 2.0487 3.2751 34 1 3.3688 1.1633 4.8691 35 1 4.2317 2.6402 4.3728 36 1 1.9036 2.4864 6.3439 37 1 3.6091 2.7958 6.7520 38 1 2.2677 4.9075 6.6231 39 1 3.5768 4.8672 5.4161 40 1 0.6456 4.1729 4.9176 41 1 1.4829 5.6452 4.3697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560732353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:49 Heat of formation + Delta-G solvation = -64.004110 kcal Electronic energy + Delta-G solvation = -18679.080768 eV Core-core repulsion = 15979.198516 eV Total energy + Delta-G solvation = -2699.882252 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82597 -36.66338 -33.64232 -33.51758 -31.55311 -30.04103 -28.04547 -26.30676 -24.66807 -23.76855 -23.34620 -21.27557 -19.44692 -19.03854 -16.85400 -16.07047 -15.81620 -14.91830 -14.64452 -14.39651 -13.86510 -13.57815 -13.51716 -13.11656 -12.72253 -12.58844 -12.37483 -12.19977 -11.91064 -11.58490 -11.45532 -11.06335 -10.97094 -10.93318 -10.70194 -10.60546 -10.24177 -10.05528 -9.99294 -9.81056 -9.70823 -9.13432 -8.53966 -8.17050 -7.14580 -6.21143 -3.88524 3.51780 3.53532 3.71951 4.01238 4.60084 4.71639 4.80318 4.83143 4.98239 5.15206 5.28202 5.41532 5.47597 5.47995 5.53320 5.64135 5.75969 5.80244 5.89644 5.94427 6.02369 6.04645 6.12745 6.16599 6.19048 6.22259 6.33538 6.38998 6.55397 6.72938 7.05299 7.12589 7.31689 7.36168 7.60891 8.05605 8.38939 8.57461 8.77254 9.03081 9.78593 11.14434 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036112 B = 0.005855 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.177823 B = 4781.454380 C = 5046.345750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.151 4.151 3 C 0.203 3.797 4 H 0.022 0.978 5 C -0.565 4.565 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.666 5.666 14 C 0.074 3.926 15 C 0.120 3.880 16 C -0.181 4.181 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.156 4.156 20 C 0.054 3.946 21 O -0.347 6.347 22 H 0.025 0.975 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.018 0.982 27 H 0.267 0.733 28 H 0.326 0.674 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.493 2.148 16.388 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.191 4.191 3 C 0.094 3.906 4 H 0.040 0.960 5 C -0.604 4.604 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.298 5.298 14 C -0.057 4.057 15 C 0.080 3.920 16 C -0.238 4.238 17 C -0.182 4.182 18 C -0.158 4.158 19 C -0.193 4.193 20 C -0.023 4.023 21 O -0.265 6.265 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.146 0.854 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.386 2.813 14.365 14.703 hybrid contribution 0.042 -1.079 2.281 2.524 sum -1.343 1.734 16.645 16.789 Atomic orbital electron populations 1.21542 0.96765 0.98112 1.01986 1.22216 0.96182 1.01359 0.99315 1.19332 0.95401 0.88401 0.87425 0.96002 1.21849 1.31217 1.16300 0.91029 0.92656 1.25688 0.97106 0.96187 0.99656 1.70808 1.21207 1.27640 1.35914 0.83614 0.75573 0.75639 0.75859 1.21092 1.21613 1.21568 1.60732 1.03317 1.62806 1.02933 1.21899 0.97569 0.95998 0.90196 1.21514 0.93446 0.82224 0.94811 1.22459 0.98612 1.00912 1.01850 1.22168 0.99779 1.00874 0.95378 1.21595 1.01426 0.95473 0.97344 1.22193 1.01026 0.96815 0.99299 1.22546 0.95712 0.97474 0.86617 1.88204 1.87077 1.18452 1.32762 0.95628 0.94667 0.91203 0.91362 0.96354 0.92176 0.85394 0.95342 0.91209 0.92067 0.92243 0.91118 0.91246 0.91061 0.91814 0.91941 0.91482 0.91226 0.93394 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.38 37.16 0.35 -2.35 16 2 C -0.15 -3.50 5.46 -26.73 -0.15 -3.64 16 3 C 0.20 5.11 1.97 -68.87 -0.14 4.97 16 4 H 0.02 0.61 7.22 -51.93 -0.37 0.24 16 5 C -0.57 -15.88 7.32 -34.44 -0.25 -16.14 16 6 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 7 C 0.02 0.47 5.24 -17.82 -0.09 0.38 16 8 N -0.92 -27.46 12.91 55.43 0.72 -26.75 16 9 Si 1.06 25.59 29.91 -169.99 -5.08 20.50 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.67 -14.65 6.12 -107.95 -0.66 -15.31 16 14 C 0.07 1.37 4.68 -3.82 -0.02 1.36 16 15 C 0.12 1.84 0.87 -90.57 -0.08 1.76 16 16 C -0.18 -2.47 7.61 37.15 0.28 -2.19 16 17 C -0.14 -1.81 4.92 -26.59 -0.13 -1.94 16 18 C -0.12 -1.27 5.72 -26.55 -0.15 -1.42 16 19 C -0.16 -1.65 6.14 -26.59 -0.16 -1.82 16 20 C 0.05 0.69 6.52 37.21 0.24 0.93 16 21 O -0.35 -5.91 10.10 -35.23 -0.36 -6.27 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.03 0.69 6.35 -51.93 -0.33 0.36 16 24 H 0.07 1.64 7.19 -51.93 -0.37 1.27 16 25 H 0.07 1.74 6.26 -51.93 -0.33 1.42 16 26 H 0.02 0.38 7.46 -51.93 -0.39 -0.01 16 27 H 0.27 7.97 6.02 -40.82 -0.25 7.72 16 28 H 0.33 6.80 4.46 -39.29 -0.18 6.62 16 29 H 0.03 0.51 7.45 -51.93 -0.39 0.13 16 30 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.70 4.98 -51.93 -0.26 0.44 16 33 H 0.07 1.07 6.51 -51.93 -0.34 0.73 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -30.28 304.12 -7.98 -38.26 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.88 Total: 5.09 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -0.30 Total: -20.10 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.06 Total: -42.06 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.36 Total: -6.27 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.28 -7.98 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560732353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.748 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds