Wall clock time and date at job start Sun Mar 29 2020 23:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 H 1.09004 * 109.47207 * 185.67650 * 3 2 1 5 5 C 1.50700 * 109.47374 * 305.67643 * 3 2 1 6 6 H 1.07996 * 120.00345 * 116.76220 * 5 3 2 7 7 C 1.37879 * 119.99851 * 296.76662 * 5 3 2 8 8 N 1.31521 * 120.00075 * 352.24560 * 7 5 3 9 9 Si 1.86793 * 120.00198 * 172.25111 * 7 5 3 10 10 H 1.48494 * 109.47454 * 179.97438 * 9 7 5 11 11 H 1.48509 * 109.46973 * 299.99920 * 9 7 5 12 12 H 1.48506 * 109.47250 * 59.99478 * 9 7 5 13 13 N 1.46897 * 109.47277 * 65.67531 * 3 2 1 14 14 C 1.46908 * 111.00112 * 87.01764 * 13 3 2 15 15 C 1.52997 * 109.46967 * 182.71516 * 14 13 3 16 16 C 1.52993 * 109.48406 * 60.00424 * 15 14 13 17 17 C 1.53101 * 109.47612 * 180.02562 * 15 14 13 18 18 C 1.53179 * 109.15977 * 177.59087 * 17 15 14 19 19 C 1.53176 * 109.03710 * 303.01580 * 18 17 15 20 20 C 1.53094 * 109.16328 * 56.98598 * 19 18 17 21 21 O 1.42904 * 109.48072 * 299.97444 * 15 14 13 22 22 H 1.09001 * 109.47030 * 183.31077 * 1 2 3 23 23 H 1.08999 * 109.47101 * 303.30980 * 1 2 3 24 24 H 1.09004 * 109.47209 * 63.31404 * 1 2 3 25 25 H 1.08995 * 109.47318 * 240.00035 * 2 1 3 26 26 H 1.09006 * 109.46908 * 119.99674 * 2 1 3 27 27 H 0.96999 * 119.99535 * 355.81484 * 8 7 5 28 28 H 1.00897 * 111.00307 * 323.06354 * 13 3 2 29 29 H 1.08999 * 109.46789 * 302.71550 * 14 13 3 30 30 H 1.09001 * 109.46708 * 62.71360 * 14 13 3 31 31 H 1.09001 * 109.47482 * 59.99533 * 16 15 14 32 32 H 1.09001 * 109.47381 * 179.97438 * 16 15 14 33 33 H 1.09003 * 109.46896 * 299.99278 * 16 15 14 34 34 H 1.08994 * 109.52333 * 297.49780 * 17 15 14 35 35 H 1.08998 * 109.52029 * 57.68717 * 17 15 14 36 36 H 1.08996 * 109.54542 * 62.88741 * 18 17 15 37 37 H 1.09000 * 109.53997 * 183.06586 * 18 17 15 38 38 H 1.09001 * 109.52142 * 176.88553 * 19 18 17 39 39 H 1.08994 * 109.52582 * 297.08153 * 19 18 17 40 40 H 1.09004 * 109.48044 * 62.36602 * 20 19 18 41 41 H 1.09000 * 109.48281 * 182.39687 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1253 1.4443 -0.1017 5 6 1.4262 2.1923 -1.1541 6 1 0.7762 3.0342 -0.9667 7 6 1.6944 1.8035 -2.4495 8 7 2.6011 0.8803 -2.6846 9 14 0.7701 2.5881 -3.8705 10 1 1.2400 2.0011 -5.1510 11 1 -0.6850 2.3356 -3.7142 12 1 1.0207 4.0519 -3.8761 13 7 1.6653 2.0943 1.2620 14 6 2.6761 1.8518 2.3002 15 6 2.2194 2.4874 3.6148 16 6 0.8880 1.8687 4.0453 17 6 3.2730 2.2353 4.6967 18 6 2.8375 2.9254 5.9930 19 6 2.6311 4.4183 5.7193 20 6 1.6023 4.5861 4.5980 21 8 2.0539 3.8949 3.4315 22 1 -0.3633 -1.0260 0.0594 23 1 -0.3633 0.5644 0.8588 24 1 -0.3634 0.4615 -0.9182 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.1238 0.5165 -1.9530 28 1 0.7527 1.7919 1.5682 29 1 2.8027 0.7783 2.4402 30 1 3.6247 2.2927 1.9936 31 1 1.0145 0.7952 4.1854 32 1 0.5630 2.3213 4.9821 33 1 0.1379 2.0487 3.2751 34 1 3.3688 1.1633 4.8691 35 1 4.2317 2.6402 4.3728 36 1 1.9036 2.4864 6.3439 37 1 3.6091 2.7958 6.7520 38 1 2.2677 4.9075 6.6231 39 1 3.5768 4.8672 5.4161 40 1 0.6456 4.1729 4.9176 41 1 1.4829 5.6452 4.3697 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560732353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:49 Heat of formation + Delta-G solvation = -83.576536 kcal Electronic energy + Delta-G solvation = -18679.929493 eV Core-core repulsion = 15979.198516 eV Total energy + Delta-G solvation = -2700.730976 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96277 -38.47375 -35.23489 -34.54481 -33.35404 -31.63357 -29.10025 -28.08410 -26.20917 -25.48632 -24.67194 -22.48618 -21.37697 -20.07327 -18.82989 -17.40050 -17.06766 -16.18834 -15.98054 -15.64026 -15.55805 -15.33871 -15.13289 -14.52895 -14.16574 -13.85366 -13.74109 -13.50354 -13.25841 -13.06144 -12.94831 -12.60151 -12.56241 -12.12184 -12.04077 -11.96430 -11.90069 -11.84313 -11.67480 -11.52913 -10.95510 -10.60740 -10.35120 -10.19069 -8.94409 -8.48553 -6.17273 1.55726 1.63022 1.82269 2.61743 2.89696 3.26648 3.46010 3.81576 3.92683 3.94306 3.99482 4.16249 4.27495 4.33466 4.35340 4.49393 4.51550 4.54439 4.58518 4.65490 4.77517 4.88391 4.92543 4.93193 4.98215 5.04538 5.09552 5.13800 5.19981 5.22414 5.28288 5.41809 5.48715 5.55211 6.01930 6.23739 6.49893 6.59262 6.82938 6.85865 7.57495 8.86347 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036112 B = 0.005855 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.177823 B = 4781.454380 C = 5046.345750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.142 4.142 3 C 0.206 3.794 4 H -0.014 1.014 5 C -0.574 4.574 6 H 0.041 0.959 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.108 2.892 10 H -0.286 1.286 11 H -0.270 1.270 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.073 3.927 15 C 0.121 3.879 16 C -0.176 4.176 17 C -0.141 4.141 18 C -0.117 4.117 19 C -0.151 4.151 20 C 0.046 3.954 21 O -0.387 6.387 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.256 0.744 28 H 0.334 0.666 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 2.143 18.449 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.182 4.182 3 C 0.097 3.903 4 H 0.004 0.996 5 C -0.612 4.612 6 H 0.059 0.941 7 C -0.226 4.226 8 N -0.577 5.577 9 Si 0.931 3.069 10 H -0.212 1.212 11 H -0.196 1.196 12 H -0.205 1.205 13 N -0.307 5.307 14 C -0.057 4.057 15 C 0.081 3.919 16 C -0.233 4.233 17 C -0.180 4.180 18 C -0.154 4.154 19 C -0.189 4.189 20 C -0.031 4.031 21 O -0.306 6.306 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.155 0.845 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.640 2.810 16.463 16.909 hybrid contribution 0.472 -1.033 1.691 2.037 sum -2.168 1.777 18.155 18.370 Atomic orbital electron populations 1.21449 0.94951 0.99916 1.01324 1.22052 0.97686 0.99544 0.98891 1.19125 0.92992 0.89773 0.88434 0.99599 1.22084 1.30738 1.16025 0.92369 0.94103 1.26973 0.97149 0.96032 1.02424 1.70919 1.22340 1.29021 1.35466 0.83047 0.75525 0.75316 0.73032 1.21182 1.19563 1.20484 1.60582 1.04522 1.62771 1.02809 1.21935 0.95749 0.96795 0.91194 1.21471 0.95257 0.81723 0.93407 1.22412 0.96892 1.01752 1.02260 1.22140 0.98235 1.01969 0.95624 1.21609 1.02615 0.94894 0.96294 1.22166 0.99964 0.97335 0.99415 1.22778 0.96814 0.97343 0.86120 1.88132 1.87667 1.19366 1.35464 0.92847 0.93004 0.93833 0.94198 0.94222 0.93418 0.84510 0.94445 0.93696 0.90825 0.89942 0.92884 0.89989 0.92308 0.90539 0.90060 0.88829 0.92175 0.92290 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.38 71.98 0.68 -4.25 16 2 C -0.14 -6.60 5.46 30.60 0.17 -6.43 16 3 C 0.21 10.66 1.97 44.17 0.09 10.74 16 4 H -0.01 -0.81 7.22 -2.38 -0.02 -0.82 16 5 C -0.57 -32.95 7.32 25.60 0.19 -32.76 16 6 H 0.04 2.42 7.83 -2.91 -0.02 2.40 16 7 C -0.03 -1.63 5.24 84.65 0.44 -1.19 16 8 N -0.94 -57.58 12.91 21.45 0.28 -57.30 16 9 Si 1.11 51.76 29.91 68.60 2.05 53.81 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 N -0.67 -30.02 6.12 -495.44 -3.03 -33.05 16 14 C 0.07 2.75 4.68 86.30 0.40 3.16 16 15 C 0.12 3.59 0.87 -10.76 -0.01 3.58 16 16 C -0.18 -4.39 7.61 71.98 0.55 -3.84 16 17 C -0.14 -3.30 4.92 30.69 0.15 -3.15 16 18 C -0.12 -2.06 5.72 30.71 0.18 -1.88 16 19 C -0.15 -2.80 6.14 30.68 0.19 -2.61 16 20 C 0.05 1.09 6.52 72.01 0.47 1.56 16 21 O -0.39 -13.01 10.10 -148.98 -1.50 -14.52 16 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.05 1.94 6.35 -2.39 -0.02 1.93 16 24 H 0.04 2.02 7.19 -2.38 -0.02 2.00 16 25 H 0.04 2.07 6.26 -2.39 -0.01 2.06 16 26 H 0.04 1.64 7.46 -2.38 -0.02 1.62 16 27 H 0.26 15.88 6.02 -92.71 -0.56 15.32 16 28 H 0.33 13.77 4.46 -89.70 -0.40 13.37 16 29 H 0.04 1.33 7.45 -2.39 -0.02 1.31 16 30 H 0.04 1.88 8.11 -2.39 -0.02 1.86 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.67 4.98 -2.39 -0.01 1.65 16 33 H 0.05 1.51 6.51 -2.39 -0.02 1.49 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.18 6.62 -2.39 -0.02 1.17 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.25 6.34 -2.38 -0.02 1.23 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -66.80 304.12 2.09 -64.72 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.81 Total: 23.42 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 3.49 Total: -37.09 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -2.75 Total: -90.35 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -1.50 Total: -14.52 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -66.80 2.09 -64.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560732353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.861 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds