Wall clock time and date at job start Sun Mar 29 2020 23:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47046 * 2 1 4 4 H 1.09001 * 109.47360 * 54.35812 * 3 2 1 5 5 C 1.50704 * 109.47011 * 174.35740 * 3 2 1 6 6 H 1.08001 * 119.99887 * 120.00176 * 5 3 2 7 7 C 1.37882 * 119.99924 * 299.99729 * 5 3 2 8 8 N 1.31520 * 119.99834 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 119.99951 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47385 * 120.00388 * 9 7 5 12 12 H 1.48506 * 109.47006 * 240.00229 * 9 7 5 13 13 N 1.46897 * 109.47409 * 294.35676 * 3 2 1 14 14 C 1.46892 * 111.00444 * 154.84657 * 13 3 2 15 15 C 1.53008 * 109.47381 * 174.98093 * 14 13 3 16 16 C 1.52999 * 109.47748 * 305.02346 * 15 14 13 17 17 C 1.53088 * 109.47933 * 184.99885 * 15 14 13 18 18 C 1.53179 * 109.16391 * 182.40671 * 17 15 14 19 19 C 1.53185 * 109.03238 * 56.98239 * 18 17 15 20 20 C 1.53089 * 109.16213 * 303.02103 * 19 18 17 21 21 O 1.42898 * 109.47440 * 65.05963 * 15 14 13 22 22 H 1.09003 * 109.47003 * 65.64027 * 1 2 3 23 23 H 1.08997 * 109.47071 * 185.64058 * 1 2 3 24 24 H 1.09006 * 109.47044 * 305.64483 * 1 2 3 25 25 H 1.08994 * 109.47400 * 239.99818 * 2 1 3 26 26 H 1.09002 * 109.47048 * 119.99812 * 2 1 3 27 27 H 0.96996 * 119.99673 * 180.02562 * 8 7 5 28 28 H 1.00907 * 110.99508 * 30.88973 * 13 3 2 29 29 H 1.08998 * 109.47412 * 294.98352 * 14 13 3 30 30 H 1.09007 * 109.47047 * 54.98349 * 14 13 3 31 31 H 1.09000 * 109.46945 * 60.00164 * 16 15 14 32 32 H 1.08998 * 109.46442 * 179.97438 * 16 15 14 33 33 H 1.08990 * 109.47297 * 299.99619 * 16 15 14 34 34 H 1.09003 * 109.52750 * 302.31678 * 17 15 14 35 35 H 1.09005 * 109.51983 * 62.50447 * 17 15 14 36 36 H 1.08989 * 109.54692 * 176.84719 * 18 17 15 37 37 H 1.09000 * 109.54492 * 297.02891 * 18 17 15 38 38 H 1.08999 * 109.52169 * 62.92242 * 19 18 17 39 39 H 1.08997 * 109.52310 * 183.11743 * 19 18 17 40 40 H 1.09008 * 109.48054 * 177.59084 * 20 19 18 41 41 H 1.08998 * 109.48668 * 297.61115 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 0.8352 5 6 3.5405 1.4448 0.1397 6 1 4.1540 1.8865 -0.6316 7 6 4.1302 0.8830 1.2523 8 7 3.3831 0.3448 2.1914 9 14 5.9900 0.8865 1.4258 10 1 6.5963 1.5481 0.2427 11 1 6.3711 1.6265 2.6556 12 1 6.4812 -0.5120 1.5174 13 7 1.6647 2.0946 -1.2617 14 6 1.5806 3.5518 -1.0965 15 6 1.3117 4.2043 -2.4541 16 6 2.3837 3.7641 -3.4530 17 6 1.3477 5.7275 -2.3045 18 6 1.0184 6.3732 -3.6539 19 6 -0.3472 5.8679 -4.1295 20 6 -0.3178 4.3394 -4.2085 21 8 0.0246 3.8040 -2.9285 22 1 -0.3633 0.4239 -0.9362 23 1 -0.3633 -1.0227 0.1010 24 1 -0.3633 0.5989 0.8352 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7979 -0.0500 2.9743 28 1 0.7981 1.7204 -1.6183 29 1 0.7691 3.7934 -0.4101 30 1 2.5213 3.9267 -0.6932 31 1 2.3575 2.6797 -3.5596 32 1 2.1917 4.2287 -4.4201 33 1 3.3651 4.0701 -3.0910 34 1 0.6119 6.0382 -1.5627 35 1 2.3423 6.0386 -1.9848 36 1 0.9874 7.4568 -3.5417 37 1 1.7825 6.1039 -4.3832 38 1 -1.1173 6.1814 -3.4246 39 1 -0.5649 6.2795 -5.1151 40 1 -1.3002 3.9717 -4.5053 41 1 0.4242 4.0275 -4.9435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560732354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:51 Heat of formation + Delta-G solvation = -66.471066 kcal Electronic energy + Delta-G solvation = -18613.503884 eV Core-core repulsion = 15913.514656 eV Total energy + Delta-G solvation = -2699.989227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70663 -36.17073 -33.50399 -33.31040 -31.72655 -30.16864 -27.80209 -26.68575 -24.84976 -23.76741 -22.56491 -21.00822 -19.48584 -18.87159 -16.24740 -16.00383 -15.65445 -14.93530 -14.65781 -14.55156 -14.11716 -13.66842 -13.19049 -12.93018 -12.60881 -12.52288 -12.02304 -11.81934 -11.79188 -11.40143 -11.21052 -11.03382 -10.92995 -10.84553 -10.81194 -10.58510 -10.49111 -10.01128 -9.89744 -9.56997 -9.37550 -9.09900 -8.95076 -8.29125 -7.07799 -5.91329 -3.95212 3.33742 3.41695 3.46582 4.07103 4.48746 4.82166 4.87223 4.93971 5.07058 5.34234 5.36641 5.46407 5.54426 5.59998 5.74910 5.85815 5.86918 5.97452 5.99454 6.12841 6.21193 6.27217 6.27676 6.29425 6.37672 6.45083 6.52678 6.66129 6.87007 6.95484 7.17398 7.28807 7.58247 7.62730 7.86340 7.99216 8.40977 8.48417 8.89033 9.13492 9.69629 11.14002 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028817 B = 0.006472 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.412679 B = 4325.548757 C = 4973.982177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.085 3.915 15 C 0.118 3.882 16 C -0.162 4.162 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.154 4.154 20 C 0.058 3.942 21 O -0.372 6.372 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.258 0.742 28 H 0.324 0.676 29 H 0.019 0.981 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.988 8.937 -10.580 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.313 5.313 14 C -0.045 4.045 15 C 0.079 3.921 16 C -0.219 4.219 17 C -0.182 4.182 18 C -0.159 4.159 19 C -0.192 4.192 20 C -0.019 4.019 21 O -0.291 6.291 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.430 8.732 -10.526 14.715 hybrid contribution 0.301 0.304 0.566 0.709 sum -5.128 9.036 -9.960 14.393 Atomic orbital electron populations 1.21875 0.99580 0.99532 0.99731 1.21742 0.91269 1.00353 1.02896 1.19157 0.95318 0.90037 0.84525 0.98266 1.21266 0.91367 1.36152 1.04037 0.92072 1.24969 0.97956 0.95789 0.95950 1.69893 1.34484 1.39730 1.09581 0.86522 0.86013 0.77561 0.77766 1.19846 1.21322 1.21186 1.60645 1.36557 1.01675 1.32373 1.21767 1.00133 0.90905 0.91694 1.21654 0.83037 0.91949 0.95467 1.22223 0.98611 1.03678 0.97404 1.22159 1.02421 0.96175 0.97423 1.21596 0.96986 0.99761 0.97518 1.22175 0.98155 0.97420 1.01475 1.22483 1.00369 0.92314 0.86695 1.87977 1.35077 1.71821 1.34229 0.94376 0.94543 0.93995 0.94133 0.88393 0.93229 0.85858 0.96297 0.89766 0.90142 0.93782 0.91953 0.91491 0.90891 0.92083 0.91637 0.91433 0.91540 0.89647 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.64 37.16 0.36 -2.69 16 2 C -0.12 -3.00 5.36 -26.73 -0.14 -3.14 16 3 C 0.22 5.49 2.02 -68.86 -0.14 5.35 16 4 H 0.00 -0.01 7.85 -51.93 -0.41 -0.42 16 5 C -0.49 -13.54 8.55 -34.44 -0.29 -13.84 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.79 11.29 55.43 0.63 -25.16 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.80 5.29 -107.95 -0.57 -15.37 16 14 C 0.09 1.66 4.65 -3.82 -0.02 1.65 16 15 C 0.12 1.89 0.88 -90.57 -0.08 1.81 16 16 C -0.16 -2.51 7.72 37.16 0.29 -2.23 16 17 C -0.14 -1.94 4.92 -26.59 -0.13 -2.07 16 18 C -0.12 -1.35 5.72 -26.54 -0.15 -1.50 16 19 C -0.15 -1.65 6.14 -26.59 -0.16 -1.81 16 20 C 0.06 0.72 6.51 37.20 0.24 0.96 16 21 O -0.37 -5.99 9.85 -35.23 -0.35 -6.34 16 22 H 0.04 0.71 6.65 -51.93 -0.35 0.37 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.32 6.80 6.28 -39.29 -0.25 6.55 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.74 7.92 -51.93 -0.41 1.33 16 31 H 0.08 1.41 7.47 -51.93 -0.39 1.02 16 32 H 0.04 0.58 4.98 -51.93 -0.26 0.32 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.60 8.14 -51.94 -0.42 0.18 16 37 H 0.06 0.71 6.62 -51.93 -0.34 0.37 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 41 H 0.05 0.61 6.34 -51.93 -0.33 0.28 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -28.51 310.44 -8.20 -36.71 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.23 Total: 5.01 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.33 Total: -16.12 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.05 Total: -40.53 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.35 Total: -6.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.51 -8.20 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560732354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.760 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds