Wall clock time and date at job start Sun Mar 29 2020 23:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47278 * 2 1 4 4 H 1.09003 * 109.47265 * 305.87166 * 3 2 1 5 5 C 1.50690 * 109.47465 * 185.86757 * 3 2 1 6 6 H 1.08001 * 120.00664 * 243.46509 * 5 3 2 7 7 C 1.37880 * 120.00247 * 63.46009 * 5 3 2 8 8 N 1.31507 * 120.00500 * 196.03891 * 7 5 3 9 9 Si 1.86802 * 119.99718 * 16.03855 * 7 5 3 10 10 H 1.48500 * 109.47366 * 92.57432 * 9 7 5 11 11 H 1.48496 * 109.47161 * 212.57554 * 9 7 5 12 12 H 1.48506 * 109.47083 * 332.57247 * 9 7 5 13 13 N 1.46905 * 109.47196 * 65.86370 * 3 2 1 14 14 C 1.46896 * 111.00424 * 258.60187 * 13 3 2 15 15 C 1.52995 * 109.47194 * 174.74951 * 14 13 3 16 16 C 1.53000 * 109.47762 * 59.97883 * 15 14 13 17 17 C 1.53096 * 109.48074 * 180.02562 * 15 14 13 18 18 C 1.53174 * 109.16301 * 177.59579 * 17 15 14 19 19 C 1.53184 * 109.03651 * 303.01656 * 18 17 15 20 20 C 1.53090 * 109.16004 * 56.98188 * 19 18 17 21 21 O 1.42902 * 109.48304 * 299.94618 * 15 14 13 22 22 H 1.09003 * 109.47253 * 295.85171 * 1 2 3 23 23 H 1.09004 * 109.46768 * 55.84688 * 1 2 3 24 24 H 1.08997 * 109.47367 * 175.84829 * 1 2 3 25 25 H 1.08997 * 109.47132 * 240.00363 * 2 1 3 26 26 H 1.09000 * 109.47245 * 119.99820 * 2 1 3 27 27 H 0.97001 * 120.00353 * 180.02562 * 8 7 5 28 28 H 1.00905 * 110.99567 * 134.64662 * 13 3 2 29 29 H 1.09001 * 109.46812 * 54.75400 * 14 13 3 30 30 H 1.08999 * 109.47271 * 294.75420 * 14 13 3 31 31 H 1.09007 * 109.47185 * 60.00121 * 16 15 14 32 32 H 1.09001 * 109.47170 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.47527 * 299.99552 * 16 15 14 34 34 H 1.08999 * 109.52257 * 297.49753 * 17 15 14 35 35 H 1.08999 * 109.52196 * 57.68800 * 17 15 14 36 36 H 1.09000 * 109.54738 * 62.88828 * 18 17 15 37 37 H 1.08996 * 109.54242 * 183.06467 * 18 17 15 38 38 H 1.08994 * 109.51979 * 176.88590 * 19 18 17 39 39 H 1.08998 * 109.52166 * 297.07985 * 19 18 17 40 40 H 1.09006 * 109.48085 * 62.37166 * 20 19 18 41 41 H 1.08996 * 109.48381 * 182.39270 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9858 -0.8328 5 6 3.5399 1.4450 -0.1452 6 1 4.1588 1.8350 0.6493 7 6 4.1223 0.9494 -1.2925 8 7 5.4042 0.6562 -1.3054 9 14 3.0904 0.6944 -2.8286 10 1 3.1616 1.9089 -3.6801 11 1 3.6102 -0.4723 -3.5860 12 1 1.6790 0.4437 -2.4408 13 7 1.6693 2.0930 1.2639 14 6 0.4998 2.9637 1.0848 15 6 0.0649 3.5192 2.4424 16 6 1.2120 4.3251 3.0551 17 6 -1.1544 4.4261 2.2560 18 6 -1.6202 4.9301 3.6254 19 6 -1.9226 3.7270 4.5241 20 6 -0.6737 2.8471 4.6229 21 8 -0.2764 2.4382 3.3125 22 1 -0.3634 0.4481 0.9248 23 1 -0.3633 0.5770 -0.8505 24 1 -0.3634 -1.0249 -0.0744 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 5.8140 0.3078 -2.1126 28 1 2.4479 2.6076 1.6477 29 1 -0.3174 2.3892 0.6486 30 1 0.7591 3.7884 0.4209 31 1 1.4718 5.1499 2.3914 32 1 0.9019 4.7212 4.0221 33 1 2.0796 3.6788 3.1883 34 1 -0.8842 5.2752 1.6281 35 1 -1.9584 3.8628 1.7824 36 1 -0.8345 5.5350 4.0780 37 1 -2.5205 5.5325 3.5053 38 1 -2.2017 4.0761 5.5182 39 1 -2.7421 3.1496 4.0963 40 1 0.1337 3.4128 5.0879 41 1 -0.8957 1.9673 5.2267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560732355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:53 Heat of formation + Delta-G solvation = -59.131478 kcal Electronic energy + Delta-G solvation = -18727.132011 eV Core-core repulsion = 16027.461052 eV Total energy + Delta-G solvation = -2699.670959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79053 -36.41172 -33.52498 -33.35752 -31.90682 -30.40148 -27.97517 -27.44315 -24.86763 -23.74752 -22.37369 -21.14441 -19.53780 -18.98106 -17.04004 -16.00649 -15.81376 -15.16603 -14.73757 -14.47833 -14.03770 -13.65497 -13.22638 -13.04249 -12.71505 -12.61604 -12.44825 -12.05150 -12.00691 -11.63716 -11.46997 -11.37896 -10.96656 -10.88302 -10.84617 -10.72665 -10.54710 -10.24444 -9.82104 -9.70279 -9.24406 -9.10792 -9.05565 -8.38739 -7.27626 -6.10606 -4.04944 3.29518 3.39335 3.44109 4.03213 4.43766 4.70321 4.81603 4.85232 4.99137 5.19597 5.21062 5.30660 5.44639 5.51278 5.57933 5.67467 5.78078 5.83038 5.91940 5.97569 6.06622 6.08399 6.16673 6.18999 6.21901 6.22926 6.35757 6.42178 6.57542 6.77517 6.90039 7.14252 7.18626 7.54011 7.61677 7.73917 8.07797 8.45167 8.68538 8.99142 9.56462 11.02344 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037867 B = 0.006172 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.248868 B = 4535.699105 C = 4701.455224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C 0.192 3.808 4 H 0.001 0.999 5 C -0.532 4.532 6 H 0.074 0.926 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.863 3.137 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.669 5.669 14 C 0.070 3.930 15 C 0.121 3.879 16 C -0.180 4.180 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.155 4.155 20 C 0.054 3.946 21 O -0.348 6.348 22 H 0.062 0.938 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.337 0.663 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.885 7.453 8.733 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C 0.083 3.917 4 H 0.019 0.981 5 C -0.570 4.570 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.689 3.311 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.301 5.301 14 C -0.060 4.060 15 C 0.082 3.918 16 C -0.238 4.238 17 C -0.183 4.183 18 C -0.158 4.158 19 C -0.193 4.193 20 C -0.023 4.023 21 O -0.266 6.266 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.080 6.642 8.778 17.872 hybrid contribution -0.035 0.907 -1.324 1.606 sum -14.114 7.548 7.453 17.656 Atomic orbital electron populations 1.21883 0.98630 0.99282 1.00851 1.21813 0.92750 0.99277 1.00557 1.19447 0.95239 0.90933 0.86102 0.98134 1.21249 0.89599 1.42396 1.03781 0.90755 1.24891 0.94734 0.94049 0.98808 1.69993 1.11737 1.42748 1.28311 0.87204 0.82526 0.77730 0.83595 1.20932 1.21353 1.17336 1.60486 1.07312 1.33087 1.29176 1.22019 0.96122 0.95513 0.92329 1.21509 0.92242 0.86812 0.91287 1.22445 0.99813 1.00652 1.00881 1.22176 0.98845 0.99873 0.97375 1.21592 1.01043 0.97424 0.95785 1.22192 0.99571 0.97601 0.99946 1.22528 0.94718 0.98711 0.86332 1.88161 1.86275 1.30810 1.21362 0.91944 0.94731 0.94895 0.93515 0.92280 0.92710 0.84428 0.90784 0.94988 0.92018 0.92496 0.90739 0.91202 0.91223 0.91748 0.92034 0.91546 0.91340 0.93301 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.73 37.16 0.32 -2.60 16 2 C -0.11 -2.43 4.86 -26.73 -0.13 -2.56 16 3 C 0.19 4.58 1.74 -68.87 -0.12 4.46 16 4 H 0.00 0.03 6.35 -51.93 -0.33 -0.30 16 5 C -0.53 -14.89 9.02 -34.44 -0.31 -15.20 16 6 H 0.07 2.24 7.67 -52.49 -0.40 1.83 16 7 C 0.08 2.25 5.31 -17.82 -0.09 2.15 16 8 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 9 Si 0.86 21.40 25.76 -169.99 -4.38 17.02 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.25 -5.89 5.49 56.52 0.31 -5.58 16 13 N -0.67 -13.93 5.88 -107.96 -0.63 -14.56 16 14 C 0.07 1.23 4.23 -3.83 -0.02 1.22 16 15 C 0.12 1.78 0.87 -90.57 -0.08 1.70 16 16 C -0.18 -2.45 7.60 37.16 0.28 -2.17 16 17 C -0.14 -1.74 4.92 -26.59 -0.13 -1.87 16 18 C -0.12 -1.23 5.72 -26.55 -0.15 -1.38 16 19 C -0.16 -1.58 6.14 -26.59 -0.16 -1.74 16 20 C 0.05 0.66 6.52 37.20 0.24 0.90 16 21 O -0.35 -5.54 10.10 -35.23 -0.36 -5.90 16 22 H 0.06 1.21 6.66 -51.93 -0.35 0.86 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.12 4.88 -51.93 -0.25 0.87 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.34 7.09 6.19 -39.29 -0.24 6.85 16 29 H 0.07 1.33 6.02 -51.93 -0.31 1.01 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.67 4.98 -51.93 -0.26 0.41 16 33 H 0.07 1.13 6.70 -51.93 -0.35 0.78 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.57 6.34 -51.93 -0.33 0.24 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 301.34 15.07 4.54 4.54 Total: -1.00 -29.99 301.34 -7.45 -37.44 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.04 Total: 4.93 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.35 Total: -17.09 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.14 Total: -40.95 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.36 Total: -5.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.38 Total: 17.02 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.99 -7.45 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560732355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.691 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds